NACDDB - The Web Server for DNA,RNA,and Hybrids Circular Dichroism Structure

Relevant Papers about Circular Dichroism

The table here shows a series of entries taken from PubMed. Each line is dedicated to an article. Title column's elements redirect to a dedicated page.

First Author Title Journal Title Pubmed ID DOI Year
Bishop GR Characterization of DNA structures by circular dichroism Current protocols in nucleic acid chemistry 18428914 10.1002/0471142700.nc0711s11 2003
Sathyaseelan C CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms Journal of molecular biology 32841657 10.1016/j.jmb.2020.08.014 2020
Del Villar-Guerra R G-Quadruplex Secondary Structure Obtained from Circular Dichroism Spectroscopy Angewandte Chemie (International ed. in English) 29076232 10.1002/anie.201709184 2018
Del Villar-Guerra R Characterization of Quadruplex DNA Structure by Circular Dichroism Current protocols in nucleic acid chemistry 28252181 10.1002/cpnc.23 2017
O'Mahony AM Biophysical and structural characterisation of nucleic acid complexes with modified cyclodextrins using circular dichroism Journal of pharmaceutical sciences 24604260 10.1002/jps.23922 2014
Daly S Mass-resolved electronic circular dichroism ion spectroscopy Science (New York, N.Y.) 32587016 10.1126/science.abb1822 2020
Tuite EM Linear and circular dichroism characterization of thionine binding mode with DNA polynucleotides Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 28800432 10.1016/j.saa.2017.07.064 2017
Weisshoff H Characterization of Aptamer BC 007 Substance and Product Using Circular Dichroism and Nuclear Magnetic Resonance Spectroscopy Journal of pharmaceutical sciences 29678593 10.1016/j.xphs.2018.04.003 2018
Gabelica V Native Mass Spectrometry and Nucleic Acid G-Quadruplex Biophysics: Advancing Hand in Hand Accounts of chemical research 34546031 10.1021/acs.accounts.1c00396 2021
Wu P Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials Advanced materials (Deerfield Beach, Fla.) 25205057 10.1002/adma.201304891 2014
Armitage BA Targeting G-Quadruplexes with PNA Oligomers Methods in molecular biology (Clifton, N.J.) 31444760 10.1007/978-1-4939-9666-7_20 2019
Kuo PH Structural insights into TDP-43 in nucleic-acid binding and domain interactions Nucleic acids research 19174564 10.1093/nar/gkp013 2009
Wang CC Nucleic acid binding properties of the nucleic acid chaperone domain of hepatitis delta antigen Nucleic acids research 14602906 10.1093/nar/gkg857 2003
Francis AJ Protocol for the Solid-phase Synthesis of Oligomers of RNA Containing a 2'-O-thiophenylmethyl Modification and Characterization via Circular Dichroism Journal of visualized experiments : JoVE 28784951 10.3791/56189 2017
Monsen RC The solution structures of higher-order human telomere G-quadruplex multimers Nucleic acids research 33469644 10.1093/nar/gkaa1285 2021
Musumeci D DNA- and RNA-binding ability of oligoDapT, a nucleobase-decorated peptide, for biomedical applications International journal of nanomedicine 29750033 10.2147/IJN.S156381 2018
Kypr J Circular dichroism and conformational polymorphism of DNA Nucleic acids research 19190094 10.1093/nar/gkp026 2009
Lin TH Secondary structural analysis of retrovirus integrase: characterization by circular dichroism and empirical prediction methods Proteins 2546146 10.1002/prot.340050210 1989
Tevelev A Tumor suppressor p16INK4A: structural characterization of wild-type and mutant proteins by NMR and circular dichroism Biochemistry 8755727 10.1021/bi960211+ 1996
Ren J Tiny telomere DNA Nucleic acids research 12034817 10.1093/nar/30.11.2307 2002
Gray RD Isothermal folding of G-quadruplexes Methods (San Diego, Calif.) 22525787 10.1016/j.ymeth.2012.04.006 2012
Powell MD Characterization of the Pf3 single-strand DNA binding protein by circular dichroism spectroscopy Biochemistry 8241145 10.1021/bi00097a034 1993
Miclot T Forever Young: Structural Stability of Telomeric Guanine Quadruplexes in the Presence of Oxidative DNA Lesions* Chemistry (Weinheim an der Bergstrasse, Germany) 33871121 10.1002/chem.202100993 2021
Tuite EM Structural Heterogeneity in Polynucleotide-Facilitated Assembly of Phenothiazine Dyes The journal of physical chemistry. B 29481085 10.1021/acs.jpcb.7b12835 2018
Niu D The unusual and dynamic character of PX-DNA Nucleic acids research 26184876 10.1093/nar/gkv739 2015
Kolesnikova S Multimerization rules for G-quadruplexes Nucleic acids research 28911118 10.1093/nar/gkx637 2017
Miller PS Nonionic nucleic acid analogues. Synthesis and characterization of dideoxyribonucleoside methylphosphonates Biochemistry 497173 10.1021/bi00590a017 1979
Gerber AB Synthesis and properties of isobicyclo-DNA Chemistry (Weinheim an der Bergstrasse, Germany) 23613358 10.1002/chem.201300487 2013
Ghosh A DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions Nucleic acids research 33555347 10.1093/nar/gkab039 2021
Weynand J Targeting G-Rich DNA Structures with Photoreactive Bis-Cyclometallated Iridium(III) Complexes Chemistry (Weinheim an der Bergstrasse, Germany) 31290208 10.1002/chem.201902183 2019
Basu A Interaction of proflavine with the RNA polynucleotide polyriboadenylic acid-polyribouridylic acid: photophysical and calorimetric studies Journal of biomolecular structure & dynamics 31057051 10.1080/07391102.2019.1615001 2019
Mergny JL Thermal difference spectra: a specific signature for nucleic acid structures Nucleic acids research 16157860 10.1093/nar/gni134 2005
Comez L Polymorphism of human telomeric quadruplexes with drugs: a multi-technique biophysical study Physical chemistry chemical physics : PCCP 32400802 10.1039/d0cp01483d 2020
Illodo S Spectroscopic Characterization of Mitochondrial G-Quadruplexes International journal of molecular sciences 35055110 10.3390/ijms23020925 2022
Balogh RK A study on the secondary structure of the metalloregulatory protein CueR: effect of pH, metal ions and DNA European biophysics journal : EBJ 33907862 10.1007/s00249-021-01539-z 2021
Chowdhury S Comparative binding studies on the interaction of the indoloquinoline alkaloid cryptolepine with the B and the non-canonical protonated form of DNA: A spectroscopic insight Biochimica et biophysica acta. General subjects 34453987 10.1016/j.bbagen.2021.129993 2021
Manukhova TI Thermal remodelling of Alternanthera mosaic virus virions and virus-like particles into protein spherical particles PloS one 34320024 10.1371/journal.pone.0255378 2021
Khan SH Structural and thermodynamic characterization of a highly stable conformation of Rv2966c, a 16S rRNA methyltransferase, at low pH International journal of biological macromolecules 32888991 10.1016/j.ijbiomac.2020.08.236 2020
Poecheim J Characterization of pDNA-TMC Nanoparticle Interaction and Stability Current drug delivery 26638979 10.2174/156720181303160520191305 2016
Tsao HS Design of novel histone-derived antimicrobial peptides Peptides 19770014 10.1016/j.peptides.2009.09.011 2009
Švehlová K Altered biochemical specificity of G-quadruplexes with mutated tetrads Nucleic acids research 27789695 10.1093/nar/gkw987 2016
Zonjić I Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands Biomolecules 35327566 10.3390/biom12030374 2022
Sobczak K Structural diversity of triplet repeat RNAs The Journal of biological chemistry 20159983 10.1074/jbc.M109.078790 2010
Iacobucci V Control of pH responsive peptide self-association during endocytosis is required for effective gene transfer Biochimica et biophysica acta 22226847 10.1016/j.bbamem.2011.12.018 2011
Zhang S Discovery of the first self-assembling peptide, study of peptide dynamic behaviors, and G protein-coupled receptors using an Aviv circular dichroism spectropolarimeter Biopolymers 30269347 10.1002/bip.23235 2018
Roxo C G4 Matters-The Influence of G-Quadruplex Structural Elements on the Antiproliferative Properties of G-Rich Oligonucleotides International journal of molecular sciences 34066551 10.3390/ijms22094941 2021
Iverson D Characterization of the structural and protein recognition properties of hybrid PNA-DNA four-way junctions Archives of biochemistry and biophysics 26348651 10.1016/j.abb.2015.08.017 2015
Marchand A Folding and misfolding pathways of G-quadruplex DNA Nucleic acids research 27924036 10.1093/nar/gkw970 2016
Adhikary R Conformational Heterogeneity and DNA Recognition by the Morphogen Bicoid Biochemistry 28547993 10.1021/acs.biochem.7b00255 2017
Rukin PS Chirality of a rhodamine heterodimer linked to a DNA scaffold: an experimental and computational study Physical chemistry chemical physics : PCCP 32219241 10.1039/d0cp00223b 2020
Dimkovikj A Characterization of tRNA(Leu) binding interactions with Cu(2+) and Pb(2+) and their biological implications Journal of inorganic biochemistry 28376339 10.1016/j.jinorgbio.2017.03.008 2017
Ding S Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations Chirality 19937959 10.1002/chir.20804 2009
Webby MN A method for analyzing the composition of viral nucleoprotein complexes, produced by heterologous expression in bacteria Virology 30529564 10.1016/j.virol.2018.11.013 2018
Seeman NC Physical characterization of a nucleic acid junction Progress in clinical and biological research 3991700 nan 1985
Taniguchi T Stereochemistry (and Conformation) of Nucleosides and Their Synthetic Precursors by Vibrational Circular Dichroism Current protocols in nucleic acid chemistry 29927125 10.1002/cpnc.50 2018
Saghyan AS Thiophenyl-substituted triazolyl-thione L-alanine: asymmetric synthesis, aggregation and biological properties Amino acids 24952728 10.1007/s00726-014-1782-3 2014
Wang L Detection and characterization of triple-helical pyrimidine-purine-pyrimidine nucleic acids with vibrational circular dichroism Biochemistry 7518247 10.1021/bi00194a006 1994
Patil SD Biophysical characterization of anionic lipoplexes Biochimica et biophysica acta 15904657 10.1016/j.bbamem.2005.03.004 2005
Loret EP Neurotoxins active on insects: amino acid sequences, chemical modifications, and secondary structure estimation by circular dichroism of toxins from the scorpion Androctonus australis Hector Biochemistry 2334710 10.1021/bi00458a021 1990
Reyes-Reveles J mPEG-PAMAM-G4 nucleic acid nanocomplexes: enhanced stability, RNase protection, and activity of splice switching oligomer and poly I:C RNA Biomacromolecules 24164501 10.1021/bm4012425 2013
Shahabadi N DNA binding studies of antibiotic drug cephalexin using spectroscopic and molecular docking techniques Nucleosides, nucleotides & nucleic acids 30931791 10.1080/15257770.2018.1562071 2019
Peters JP Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography Journal of biomolecular structure & dynamics 28818035 10.1080/07391102.2017.1369164 2017
Marty R Structural characterization of cationic lipid-tRNA complexes Nucleic acids research 19561199 10.1093/nar/gkp543 2009
Giancola C Energetics of ligand binding to G-quadruplexes Topics in current chemistry 22851158 10.1007/128_2012_347 2013
Adams MS Thermodynamic characterization and nearest neighbor parameters for RNA duplexes under molecular crowding conditions Nucleic acids research 30698818 10.1093/nar/gkz019 2019
Huang Y Assembly of Gold Nanorods into Chiral Plasmonic Metamolecules Using DNA Origami Templates Journal of visualized experiments : JoVE 30907870 10.3791/59280 2019
Benito S Evaluation of the effect of polymorphism on G-quadruplex-ligand interaction by means of spectroscopic and chromatographic techniques Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 29448171 10.1016/j.saa.2018.02.006 2018
Bundgaard Jensen T Synthesis and structural characterization of 2'-fluoro-α-L-RNA-modified oligonucleotides Chembiochem : a European journal of chemical biology 21728225 10.1002/cbic.201100161 2011
Rodger A Looking at long molecules in solution: what happens when they are subjected to Couette flow? Physical chemistry chemical physics : PCCP 16902709 10.1039/b604810m 2006
Medvecky M Synthesis and properties of 6'-fluoro-tricyclo-DNA The Journal of organic chemistry 25767996 10.1021/acs.joc.5b00184 2015
Zhang Y Structural and Dynamical Characterization of DNA and RNA Quadruplexes Obtained from the GGGGCC and GGGCCT Hexanucleotide Repeats Associated with C9FTD/ALS and SCA36 Diseases ACS chemical neuroscience 29281254 10.1021/acschemneuro.7b00476 2018
Dierckx A Quadracyclic adenine: a non-perturbing fluorescent adenine analogue Chemistry (Weinheim an der Bergstrasse, Germany) 22437923 10.1002/chem.201103419 2012
Giri P Isoquinoline alkaloids and their binding with polyadenylic acid: potential basis of therapeutic action Mini reviews in medicinal chemistry 20500148 10.2174/138955710791384009 2010
Buscaglia R Thermodynamic characterization of human telomere quadruplex unfolding Biopolymers 23536479 10.1002/bip.22247 2013
Holt PA Discovery of novel triple helical DNA intercalators by an integrated virtual and actual screening platform Nucleic acids research 19136469 10.1093/nar/gkn1043 2009
Andrzejewska W Structural studies of the formation of lipoplexes between siRNA and selected bis-imidazolium gemini surfactants Colloids and surfaces. B, Biointerfaces 27424091 10.1016/j.colsurfb.2016.06.062 2016
Dias N Targeting DNA with novel diphenylcarbazoles Biochemistry 15568808 10.1021/bi048474o 2004
Roviello GN Synthesis of a diaminopropanoic acid-based nucleoamino acid and assembly of cationic nucleopeptides for biomedical applications Amino acids 22688861 10.1007/s00726-012-1335-6 2012
Sester C Unraveling the binding mode of a methamphetamine aptamer: A spectroscopic and calorimetric study Biophysical journal 35474264 10.1016/j.bpj.2022.04.027 2022
Kankia BI Unfolding of DNA quadruplexes induced by HIV-1 nucleocapsid protein Nucleic acids research 16077025 10.1093/nar/gki741 2005
Rigo R Conformational profiling of a G-rich sequence within the c-KIT promoter Nucleic acids research 29069417 10.1093/nar/gkx983 2017
Li B Study on the adsorption of DNA on the layered double hydroxides (LDHs) Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 24280301 10.1016/j.saa.2013.10.099 2013
Fotticchia I G-quadruplex unfolding in higher-order DNA structures Chemical communications (Cambridge, England) 24013385 10.1039/c3cc44560g 2013
Harris KA Specific RNA-protein interactions detected with saturation transfer difference NMR RNA biology 23949611 10.4161/rna.25948 2013
Virgilio A Monomolecular G-quadruplex structures with inversion of polarity sites: new topologies and potentiality Nucleic acids research 28666330 10.1093/nar/gkx566 2017
Chang CK The N-terminus of TDP-43 promotes its oligomerization and enhances DNA binding affinity Biochemical and biophysical research communications 22835933 10.1016/j.bbrc.2012.07.071 2012
Jakšić D Unique Aggregation of Sterigmatocystin in Water Yields Strong and Specific Circular Dichroism Response Allowing Highly Sensitive and Selective Monitoring of Bio-Relevant Interactions Marine drugs 31698712 10.3390/md17110629 2019
Biner SM DNA triplex-mediated assembly of polyaromatic chromophores Chemistry & biodiversity 23161630 10.1002/cbdv.201200276 2012
Attri P Influence of reactive species on the modification of biomolecules generated from the soft plasma Scientific reports 25649786 10.1038/srep08221 2015
Delaney S Charge transport in DNA duplex/quadruplex conjugates Biochemistry 14640683 10.1021/bi0351965 2003
Price DA The polarization dependence of 2D IR cross-peaks distinguishes parallel-stranded and antiparallel-stranded DNA G-quadruplexes Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 34801392 10.1016/j.saa.2021.120596 2021
Xia K Groove Binding of Vanillin and Ethyl Vanillin to Calf Thymus DNA Journal of fluorescence 28547116 10.1007/s10895-017-2119-x 2017
Wieland M Investigation of mRNA quadruplex formation in Escherichia coli Nature protocols 19876023 10.1038/nprot.2009.111 2009
Germann MW Characterization of a parallel-stranded DNA hairpin Biochemistry 2789997 10.1021/bi00441a013 1989
Dudek M Interactions of amikacin with the RNA model of the ribosomal A-site: computational, spectroscopic and calorimetric studies Biochimie 24769038 10.1016/j.biochi.2014.03.009 2014
Cox RA The circular dichroism of ribosomal ribonucleic acids The Biochemical journal 820335 10.1042/bj1550279 1976
de Mello LR Nanoscopic Structure of Complexes Formed between DNA and the Cell-Penetrating Peptide Penetratin The journal of physical chemistry. B 31465229 10.1021/acs.jpcb.9b05512 2019
Kong M Characterization of the G-quadruplex structure of a catalytic DNA with peroxidase activity Biopolymers 19137574 10.1002/bip.21135 2009
Marzano M New G-Quadruplex-Forming Oligodeoxynucleotides Incorporating a Bifunctional Double-Ended Linker (DEL): Effects of DEL Size and ODNs Orientation on the Topology, Stability, and Molecularity of DEL-G-Quadruplexes Molecules (Basel, Switzerland) 30759875 10.3390/molecules24030654 2019
Reich Z Chiral and structural discrimination in binding of polypeptides with condensed nucleic acid structures The Journal of biological chemistry 2318826 nan 1990
Singh SB Honeycomb-like Ordered Assembly of DNA Induced by Flexible Binuclear Ruthenium(II)-Polypyridyl Complexes Chemistry (Weinheim an der Bergstrasse, Germany) 27618785 10.1002/chem.201602488 2016
Pfuhl M Nebulin, a helical actin binding protein The EMBO journal 8168478 10.1002/j.1460-2075.1994.tb06446.x 1994
Shi JH Characterization of interaction of calf thymus DNA with gefitinib: spectroscopic methods and molecular docking Journal of photochemistry and photobiology. B, Biology 25839749 10.1016/j.jphotobiol.2015.03.005 2015
Shahabadi N DNA interaction studies of a platinum(II) complex containing L-histidine and 1,10-phenanthroline ligands DNA and cell biology 22324399 10.1089/dna.2011.1465 2012
Yeh JI The crystal structure of non-modified and bipyridine-modified PNA duplexes Chemistry (Weinheim an der Bergstrasse, Germany) 20859960 10.1002/chem.201000392 2010
Han F Hydration changes accompanying nucleic acid intercalation reactions:volumetric characterizations Journal of the American Chemical Society 12797795 10.1021/ja030068p 2003
Esposito V A novel pyrimidine tetrad contributing to stabilize tetramolecular G-quadruplex structures Organic & biomolecular chemistry 26876038 10.1039/c5ob02358k 2016
Bansal A A short GC-rich palindrome of human mannose receptor gene coding region displays a conformational switch Biopolymers 22987586 10.1002/bip.22111 2012
Ariyo EO Biophysical Characterization of G-Quadruplex Recognition in the PITX1 mRNA by the Specificity Domain of the Helicase RHAU PloS one 26649896 10.1371/journal.pone.0144510 2015
Déméné H Structural mechanism of signal transduction between the RNA-binding domain and the phosphotransferase system regulation domain of the LicT antiterminator The Journal of biological chemistry 18682383 10.1074/jbc.M805955200 2008
Dierckx A Characterization of photophysical and base-mimicking properties of a novel fluorescent adenine analogue in DNA Nucleic acids research 21278417 10.1093/nar/gkr010 2011
Carriero S Template-mediated synthesis of lariat RNA and DNA The Journal of organic chemistry 14575454 10.1021/jo035002r 2003
Bhuiya S Spectroscopic, photophysical and theoretical insight into the chelation properties of fisetin with copper (II) in aqueous buffered solutions for calf thymus DNA binding International journal of biological macromolecules 30172817 10.1016/j.ijbiomac.2018.08.162 2018
Reich Z Secondary conformational polymorphism of nucleic acids as a possible functional link between cellular parameters and DNA packaging processes Biochemistry 1868059 10.1021/bi00245a024 1991
Ganguly M A study of 7-deaza-2'-deoxyguanosine 2'-deoxycytidine base pairing in DNA Nucleic acids research 17855404 10.1093/nar/gkm670 2007
Stojković MR Specific and highly efficient condensation of GC and IC DNA by polyaza pyridinophane derivatives International journal of biological macromolecules 29247733 10.1016/j.ijbiomac.2017.11.156 2017
Gubendran A Non-enolisable Knoevenagel condensate appended Schiff bases-metal (II) complexes: Spectral characteristics, DNA-binding and nuclease activities Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 28319797 10.1016/j.saa.2017.03.031 2017
Dolinnaya NG Coexistence of G-quadruplex and duplex domains within the secondary structure of 31-mer DNA thrombin-binding aptamer Journal of biomolecular structure & dynamics 22734515 10.1080/07391102.2012.687518 2012
Zaman A Fructosylation induced structural changes in mammalian DNA examined by biophysical techniques Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 27902958 10.1016/j.saa.2016.11.027 2016
Taillon C Biochemical and biological characterization of Escherichia coli STb His12 to Asn variant Toxicon : official journal of the International Society on Toxinology 22155058 10.1016/j.toxicon.2011.11.015 2011
Love JD UV-induced interstrand cross-linking of d(GT)n.d(CA)n is facilitated by a structural transition The Journal of biological chemistry 3733701 nan 1986
Paritala H Characterization of insulin ILPR sequences for their ability to adopt a G-quadruplex structure Nucleosides, nucleotides & nucleic acids 20391195 10.1080/15257771003597691 2010
Sabatino D Oxepane nucleic acids: synthesis, characterization, and properties of oligonucleotides bearing a seven-membered carbohydrate ring Journal of the American Chemical Society 17559214 10.1021/ja071336c 2007
Kumar S Neomycin-neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes Journal of the American Chemical Society 21524066 10.1021/ja108118v 2011
Saito K Interaction between the heme and a G-quartet in a heme-DNA complex Inorganic chemistry 22830520 10.1021/ic3005739 2012
Russo Krauss I High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity Nucleic acids research 22669903 10.1093/nar/gks512 2012
Kaushik M Possibility of an antiparallel (tetramer) quadruplex exhibited by the double repeat of the human telomere Biochemistry 17523598 10.1021/bi0621009 2007
Gray DM Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities Chirality 17853398 10.1002/chir.20455 2008
Shi S A comparative study of the interaction of two structurally analogous ruthenium complexes with human telomeric G-quadruplex DNA Journal of inorganic biochemistry 23333713 10.1016/j.jinorgbio.2012.12.011 2012
Kashanian S DNA interaction with Al-N,N'-bis(salicylidene)2,2'-phenylendiamine complex Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 17011818 10.1016/j.saa.2006.08.017 2006
Nair S Natively unfolded nucleic acid binding P8 domain of SeMV polyprotein 2a affects the novel ATPase activity of the preceding P10 domain FEBS letters 19995563 10.1016/j.febslet.2009.12.003 2009
Su DM Glucosides from the roots of Capparis tenera Chemistry & biodiversity 18081096 10.1002/cbdv.200790235 2007
Dapić V Biophysical and biological properties of quadruplex oligodeoxyribonucleotides Nucleic acids research 12682360 10.1093/nar/gkg316 2003
Giri P Specific binding and self-structure induction to poly(A) by the cytotoxic plant alkaloid sanguinarine Biochimica et biophysica acta 17600625 10.1016/j.bbagen.2007.05.005 2007
Braun CS Structure/function relationships of polyamidoamine/DNA dendrimers as gene delivery vehicles Journal of pharmaceutical sciences 15614818 10.1002/jps.20251 2005
Sharma VR The human telomere sequence, (TTAGGG)4, in the absence and presence of cosolutes: a spectroscopic investigation Molecules (Basel, Switzerland) 24399050 10.3390/molecules19010595 2014
Alcaro S Identification and characterization of new DNA G-quadruplex binders selected by a combination of ligand and structure-based virtual screening approaches Journal of medicinal chemistry 23294188 10.1021/jm3013486 2013
D'Auria G Dynamical properties of cold shock protein A from Mycobacterium tuberculosis Biochemical and biophysical research communications 20977881 10.1016/j.bbrc.2010.10.086 2010
Chaudhary S Structural switch from a multistranded G-quadruplex to single strands as a consequence of point mutation in the promoter of the human GRIN1 gene Molecular bioSystems 28702665 10.1039/c7mb00360a 2017
Immoos CE Conformationally gated electrochemical gene detection Chembiochem : a European journal of chemical biology 15300834 10.1002/cbic.200400045 2004
Bothe JR Incorporation of CC steps into Z-DNA: interplay between B-Z junction and Z-DNA helical formation Biochemistry 22873788 10.1021/bi300785b 2012
Uma Maheswari P DNA binding and cleavage properties of certain tetrammine ruthenium(II) complexes of modified 1,10-phenanthrolines--effect of hydrogen-bonding on DNA-binding affinity Journal of inorganic biochemistry 14729302 10.1016/j.jinorgbio.2003.09.003 2004
Yu HQ Characterization of structure and stability of long telomeric DNA G-quadruplexes Journal of the American Chemical Society 17132013 10.1021/ja064536h 2006
Kubista M Characterization of interaction between DNA and 4',6-diamidino-2-phenylindole by optical spectroscopy Biochemistry 3663606 10.1021/bi00388a057 1987
Nadai M Clerocidin-mediated DNA footprinting discriminates among different G-quadruplex conformations and detects tetraplex folding in a duplex environment Biochimica et biophysica acta 23747297 10.1016/j.bbagen.2013.05.039 2013
Wang JT An effective approach to artificial nucleases using copper(II) complexes bearing nucleobases Dalton transactions (Cambridge, England : 2003) 20148233 10.1039/b915392f 2010
Kabir A Binding of the biogenic polyamines to deoxyribonucleic acids of varying base composition: base specificity and the associated energetics of the interaction PloS one 23894663 10.1371/journal.pone.0070510 2013
Antonacci C Biophysical characterization of the human telomeric (TTAGGG)4 repeat in a potassium solution Biochemistry 17381076 10.1021/bi602511p 2007
Nový J Vibrational and electronic circular dichroism study of the interactions of cationic porphyrins with (dG-dC)10 and (dA-dT)10 Biopolymers 17167793 10.1002/bip.20654 2007
Karlik SJ Interaction of aluminum species with deoxyribonucleic acid Biochemistry 7470444 10.1021/bi00567a008 1980
Kankia BI The HIV-1 central DNA flap region contains a flapping third strand Biophysical chemistry 17215070 10.1016/j.bpc.2006.12.005 2006
Yashima E Single- and double-stranded helical polymers: synthesis, structures, and functions Accounts of chemical research 18690750 10.1021/ar800091w 2008
Peberdy JC Influence of surface shape on DNA binding of bimetallo helicates Journal of inorganic biochemistry 17719088 10.1016/j.jinorgbio.2007.07.005 2007
Giri P Self-structure induction in single stranded poly(A) by small molecules: Studies on DNA intercalators, partial intercalators and groove binding molecules Archives of biochemistry and biophysics 18387354 10.1016/j.abb.2008.03.013 2008
Krafft C Secondary structure polymorphism in Oxytricha nova telomeric DNA Nucleic acids research 12235382 10.1093/nar/gkf517 2002
Evéquoz D Probing the Backbone Topology of DNA: Synthesis and Properties of 7',5'-Bicyclo-DNA Chemistry (Weinheim an der Bergstrasse, Germany) 28262999 10.1002/chem.201700435 2017
Kotkowiak W Unlocked nucleic acids: implications of increased conformational flexibility for RNA/DNA triplex formation The Biochemical journal 25226286 10.1042/BJ20141023 2014
Ghosh S Design and synthesis of novel hybrid metal complex-DNA conjugates: key building blocks for multimetallic linear DNA nanoarrays Organic & biomolecular chemistry 19532989 10.1039/b904758a 2009
Stirnimann CU Structural basis of TBX5-DNA recognition: the T-box domain in its DNA-bound and -unbound form Journal of molecular biology 20450920 10.1016/j.jmb.2010.04.052 2010
Uerpmann C Design and DNA binding of an extended triple-stranded metallo-supramolecular cylinder Chemistry (Weinheim an der Bergstrasse, Germany) 15669033 10.1002/chem.200401054 2005
Ha SC Biochemical characterization and preliminary X-ray crystallographic study of the domains of human ZBP1 bound to left-handed Z-DNA Biochimica et biophysica acta 16448869 10.1016/j.bbapap.2005.12.012 2006
Haque L Self-structure assembly in single stranded polyriboadenylic acid by benzophenanthridine alkaloid: Spectroscopic and calorimetric exploration International journal of biological macromolecules 28847605 10.1016/j.ijbiomac.2017.08.119 2017
Burin AL Sum rules and determination of exciton coupling using absorption and circular dichroism spectra of biological polymers Proceedings of the National Academy of Sciences of the United States of America 19164590 10.1073/pnas.0808513106 2009
Movahedi E Binding interaction of a heteroleptic silver(I) complex with DNA: A joint experimental and computational study International journal of biological macromolecules 30615962 10.1016/j.ijbiomac.2019.01.013 2019
Majhi PR Characterization of an unusual folding pattern in a catalytically active guanine quadruplex structure Biopolymers 16538665 10.1002/bip.20507 2006
Vijayalakshmi R DNA cleavage by a Chromium(III) complex Biochemical and biophysical research communications 10814531 10.1006/bbrc.2000.2707 2000
Dallüge R Characterization of structure and mechanism of transfection-active peptide-DNA complexes Biochimica et biophysica acta 12031483 10.1016/s0167-4781(02)00291-9 2002
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