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Structure Validation of G-Rich RNAs in Noncoding Regions of the Human Genome

Overview of Binas O et al.

AuthorsBinas O  Bessi I  Schwalbe H  
AffiliationInstitute for Organic Chemistry and Chemical Biology   Goethe University Frankfurt   Max-von-Laue Strasse 7   60438   Frankfurt   Germany.  
JournalChembiochem
Year 2020

Abstract


We present the rapid biophysical characterization of six previously reported putative G-quadruplex-forming RNAs from the 5'-untranslated region (5'-UTR) of silvestrol-sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence-[AGG](2) [CGG](2) C-folds into a single well-defined G-quadruplex structure. Sequences with longer poly-G strands form unspecific aggregates, whereas CGG-repeat-containing sequences exhibit a temperature-dependent equilibrium between a hairpin and a G-quadruplex structure. The applied experimental strategy is fast and provides robust readout for G-quadruplex-forming capacities of RNA oligomers.