Target Molecules

Using the box below, select the type of molecules of interest. By selecting a type of molecule such as, DNA, RNA, or DNA/RNA hybrids, the "Sub-types" selector will automatically filter the molecular subtypes inherent in the selected class. To understand classes' and subclasses' meaning, please, go on the Frequently Asked Questions Section (FAQ)

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ID	Experiment	Moiety Type	Moiety Subtype	Method	Source	Description	PDB
12	acid_quad_pH5.0	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 5.0	X
13	acid_quad_pH6.7	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	partial i-motif formation at pH 6.7	X
14	acid_quad_pH7.2	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 7.2	X
15	acid_quad_pH9.2	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 9.2	X
16	d_pG_5_self	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	Guanine oligo nucleotide (5 nucleotides) self complexed as a quadruplex	X
17	d_pG_5_single	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	Guanine oligo nucleotide (5 nucleotides)	X
18	d_T10C4A10_antiparallel	DNA	ssDNA	In-House	10.1126/science.3399890	antiparallel ssDNA hairpin of 10 Thymines, 4 Cytidines , 10 Adenines	X
19	d_T10C4A10_parallel	DNA	ssDNA	In-House	10.1126/science.3399890	parallel ssDNA hairpin of 10 Thymines, 4 Cytidines, and 10 Adenines	X
20	d_T10G4A10_antiparallel	DNA	ssDNA	In-House	10.1126/science.3399890	antiparallel ssDNA hairpin	X
21	d_T10G4A10_parallel	DNA	ssDNA	In-House	10.1126/science.3399890	parallel ssDNA hairpin	X
22	G3(TTA)7_quad	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
23	G3(TTAG3)7_quad_KCl_EtOH	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
24	G4_time_0min	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
25	G4_time_3.5h	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
26	G4_time_10min	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
27	G4_time_24h	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
28	G4T4G4_Na0.001M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Unformed antiparallel quadruplex	X
29	G4T4G4_Na0.01M	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	Partial antiparallel quadruplex	X
30	G4T4G4_Na0.1M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Antiparallel quadruplex	X
31	G4T4G4_Na0.5M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Antiparallel quadruplex	X
34	poly[d(AC)]•poly[d(GT]B-form	DNA	dsDNA	Synchrotron	10.1093/nar/15.18.7627	B-DNA	X
35	poly[d(AC)]•poly[d(GT)]Z-form	DNA	dsDNA	Synchrotron	10.1093/nar/15.18.7627	Z-DNA	X
36	poly[d(AG)]	DNA	ssDNA	In-House	10.1093/nar/16.2.719	poly AG ssDNA	X
37	poly[d(AG)]•poly[d(CT)]	DNA	dsDNA	In-House	10.1093/nar/16.2.719	not available	X
38	poly[d(CT)]	DNA	ssDNA	In-House	10.1093/nar/16.2.719	not available	X
39	poly[d(GC)]•poly[d(GC)]	DNA	dsDNA	Synchrotron	10.1002/bip.360251211	not available	X
40	poly[d(GC)]•poly[d(GC)]A-form	DNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	A-DNA	X
41	poly[d(GC)]•poly[d(GC)]B-form	DNA	dsDNA	Synchrotron	10.1093/nar/13.13.4983	B-DNA	X
42	poly[d(GC)]•poly[d(GC)]Z-form	DNA	dsDNA	Synchrotron	10.1093/nar/13.13.4983	Z-DNA	X
43	poly[d(Gm5C)]•poly[d(Gm5C)]B-form	DNA	ssDNA	Synchrotron	10.1111/j.1751-1097.1986.tb04667.x	methylated double stranded B-DNA	X
44	poly[d(Gm5C)]•poly[d(Gm5C)]Z-form	DNA	dsDNA	Synchrotron	10.1111/j.1751-1097.1986.tb04667.x	5 cytidine methylated double stranded DNA	X
45	poly[d(GT)]selfcomplexed	DNA	ssDNA	In-House	doi.org/10.1002/bip.1977.360160613	(GT)n self complexed	X
46	poly[d(GT)]singlestranded	DNA	ssDNA	In-House	doi.org/10.1002/bip.1977.360160613	(GT)n single stranded	X
47	poly[d(IC)]•poly[d(IC)]	DNA	dsDNA	Synchrotron	10.1002/bip.360220602	not available	X
48	poly[r(AC)]•poly[r(GU)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.1981.360200702	not available	!!!
49	poly[r(AC)]•poly[r(IU)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	!!!
50	poly[r(AG)]•poly[r(CU)]	RNA	dsRNA	Synchrotron	10.1002/bip.360250914	not available	!!!
51	poly[r(AI)]•poly[r(CU)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
52	poly[r(GC)]•poly[r(GC)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
53	poly[r(GC)]•poly[r(GC)]A-form	RNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	not available	X
54	poly[r(GC)]•poly[r(GC)]sodium_perchlorate	RNA	dsRNA	Synchrotron	10.1002/bip.360290204	not available	X
55	poly[r(GC)]•poly[r(GC)]Z-form	RNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	not available	X
56	poly[r(GU)]self-complexed	RNA	qsRNA	In-House	doi.org/10.1002/bip.1977.360160613	Quadruplex	X
57	poly[r(GU)] single-stranded	RNA	ssRNA	In-House	doi.org/10.1002/bip.1977.360160613	not available	!!!
58	poly[r(IC)]•poly[r(IC)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
59	poly[d(C)]	DNA	ssDNA	In-House	10.1080/07391102.1993.10508677	not available	X
60	poly[d(C+)] • poly[d(C+)]	DNA	dsDNA	In-House	doi.org/10.1016/0076-6879(92)11021-A	Protoned DNA	X
61	poly[d(G)]	DNA	qsDNA	In-House	10.1002/bip.1974.360131011	not available	X
62	poly[d(G)]•poly[d(C)]	DNA	dsDNA	Synchrotron	10.1002/bip.360251211	not available	X
63	poly[d(I)]	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	not available	X
64	poly[d(T)]	DNA	ssDNA	In-House	10.1093/nar/14.24.10071	poly-T	X
65	poly[r(A)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	poly-A	!!!
66	poly[r(A)]•poly[r(U)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.1981.360200702	not available	X
67	poly[r(A+)] • poly[r(A+)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360210907	Parallel double strand DNA	X
68	poly[r(C)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	not available	X
69	poly[r(C+)] • poly[r(C+)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360290205	protonated (C)n (acidic pH)	X
70	poly[r(G)]	RNA	ssRNA	In-House	10.1021/bi00804a026	not available	X
71	poly[r(G)]•poly[r(C)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
72	poly[r(G)]•poly[r(C)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360290205	(G)n•(C)n sodium perchlorate RNA double strand helix	X
73	poly[r(I)]•poly[r(C)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
74	poly[r(I)]self	RNA	ssRNA	In-House	10.1007/BF01184691	(I)n self complexed 1M NaCl	X
75	poly[r(I)]single	RNA	ssRNA	In-House		(I)n single stranded 0.01 M NaCl	!!!
76	poly[r(U)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	not available	X
77	poly[d(AT)]•poly[d(AT)]	DNA	dsDNA	Synchrotron	10.1002/bip.360240508	Flexible helix	X
78	poly[r(AAU)]•poly[r(AUU)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	(AAU)•(AUU) double stranded RNA helix	X
79	poly[r(AU)]•poly[r(AU)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
81	poly[d(U)]	DNA	ssDNA	In-House	10.1093/nar/14.24.10071	(U)n single stranded DNA	X
82	pseudoknot_experiment.gen	RNA	ssRNA	Synchrotron		Pseudoknot	X
83	(A5T5)14 • (A5T5)14	DNA	dsDNA	Synchrotron	SOLEIL	(AAAAATTTTTAAAAATTTTT)7 Bent DNA	X
84	(AC3)4	DNA	ssDNA	Synchrotron	SOLEIL	i-motif	X
85	(G3T)4	DNA	ssDNA	Synchrotron	SOLEIL	Parallel Quadruplex	X
86	(G3T)4 • (AC3)4	DNA	qsDNA	Synchrotron	SOLEIL	(G3T)4 • (AC3)4 G-Quadruplex and i-motif	X
87	(G4T2)4	DNA	ssDNA	Synchrotron	SOLEIL	Antiparallel quadruplex	X
88	(G4T2)4	DNA	qsDNA	Synchrotron	SOLEIL	Antiparallel quadruplex	X
89	r(AU)29A	RNA	dsRNA	Synchrotron	SOLEIL	dsRNA A-form	X
90	(A)20(AT)20(T)20	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
91	[(A)20(T)20(A)20]•[(T)20(A)20(T)20]	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
92	A-DNA	DNA	dsDNA	Synchrotron	SOLEIL	Double helix A-DNA - Esposito dodecamer	X
93	d(AT)29A	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
94	B-DNA	DNA	dsDNA	Synchrotron	SOLEIL	Double helix B-DNA - Dickerson dodecamer	X
95	BDNA	DNA	gDNA	Synchrotron	SOLEIL	Genomic DNA	!!!
96	bulgeflip	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
97	bulgekink	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
98	Single Palindromic Oligo with non Palindromic C at the 5’ end	DNA	dsDNA	Synchrotron	SOLEIL	Forms a hairpin or possible a ds duplex	X
99	Control5MethylC	DNA	dsDNA	Synchrotron	SOLEIL	To compare to Seq5MethylC ID=139	X
100	(CA4T4G)2	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
101	d(A)59•r(U59)	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	not available	X
102	d(A+)59 • d(A+)59 pH2	DNA	dsDNA	Synchrotron	SOLEIL	Parallel DNA	X
103	d(A)59 pH5	DNA	ssDNA	Synchrotron	SOLEIL	Parallel helix duplex	X
104	d(A)59 pH9	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
105	d(A)59d(T)59	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
106	G3T4	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
107	d(G)7	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
108	R_loop_Heat	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	Relaxed by heat and cooled down at roomtemperature	X
109	R_loop_RT	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	Relaxed at Room Temperature	X
110	DsrA 14 ARN 7 mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
111	DsrA 22 ADN 10mM	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
112	DsrA 22 ARN 10mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
113	DsrA 8 ARN 4mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
114	DsrA 8mut ARN	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
115	DsrA entier ARN	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
116	DsrA22 GC ADN 10mM-85 C	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
117	DsrA8mut ADN	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
118	flexible_helix	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
119	i_motif_ph5	DNA	ssDNA	Synchrotron	SOLEIL	i-motif	X
120	i-motif ph7	DNA	ssDNA	Synchrotron	SOLEIL	Partial i-motif	X
121	K-turn	RNA	dsRNA	Synchrotron	SOLEIL	k-turn	X
122	lambda_DNA	DNA	gDNA	Synchrotron	SOLEIL	Genomic DNA	X
123	Anti Parallel DNA	DNA	dsDNA	Synchrotron	SOLEIL	Possible Anti Parallel DNA under certain conditions	X
124	pentaloop	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
125	pseudoknot	RNA	ssRNA	Synchrotron	SOLEIL	Pseudoknot	X
126	quadruplex ARN (G3U)4	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	!!!
127	R-loop Bottom Top RNA	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	R-loop	!!!
128	Rloop bottom top	DNA	dsDNA	Synchrotron	SOLEIL	R-loop	X
129	Rloop bottom	DNA	ssDNA	Synchrotron	SOLEIL	R-loop	X
130	R-loop RNA	RNA	ssRNA	Synchrotron	SOLEIL	R-loop	X
131	R-loop Top	DNA	ssDNA	Synchrotron	SOLEIL	R-loop	X
132	r(A)59	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
133	ret1	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
134	ret2	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
135	r(G)7	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	X
136	rna-g-quadruplex	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	X
137	RNA i-motif	RNA	qsRNA	Synchrotron	SOLEIL	i-motif on RNA	X
138	r(U)59	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
139	Seq5MethylC	DNA	dsDNA	Synchrotron	SOLEIL	Methylated DNA on some C (noted ?)	X
140	Slipped strand	DNA	dsDNA	Synchrotron	SOLEIL	Slipped Strand DNA	X
141	tetraloop	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
142	Py:Pu-Pu triplexS1	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 0.5mM	X
143	Triplex S1: Py:Pu-Pu	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 1mM	X
144	Py:Pu-Py triplexS2	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 0.5mM	X
145	Triplex S2: Py:Pu-Py	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 1mM	X
146	Triplex Py:Pu-Pu inter	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intermolecular	X
147	Triplex Py:Pu-Py inter	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intermolecular	X
148	tRNA	RNA	ssRNA	Synchrotron	SOLEIL	tRNA	!!!
149	Partially unwound DNA	DNA	dsDNA	Synchrotron	SOLEIL	not available	X

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