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The triazatruxene derivative azatrux binds to the parallel form of the human telomeric G-quadruplex under molecular crowding conditions: biophysical and molecular modeling studies

Overview of Petraccone L et al.

AuthorsPetraccone L  Fotticchia I  Cummaro A  Pagano B  Ginnari-Satriani L  Haider S  Randazzo A  Novellino E  Neidle S  Giancola C  
AffiliationDipartimento di Chimica P. Corradini   Università di Napoli Federico II   via Cintia 4   Naples   Italy.  
JournalBiochimie
Year 2011

Abstract


The present study has employed a combination of spectroscopic, calorimetric and computational methods to explore the binding of the three side-chained triazatruxene derivative, termed azatrux, to a human telomeric G-quadruplex sequence, under conditions of molecular crowding. The binding of azatrux to the tetramolecular parallel [d(TGGGGT)](4) quadruplex in the presence and absence of crowding conditions, was also characterized. The data indicate that azatrux binds in an end-stacking mode to the parallel G-quadruplex scaffold and highlights the key structural elements involved in the binding. The selectivity of azatrux for the human telomeric G-quadruplex relative to another biologically relevant G-quadruplex (c-Kit87up) and to duplex DNA was also investigated under molecular crowding conditions, showing that azatrux has good selectivity for the human telomeric G-quadruplex over the other investigated DNA structures.