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Isothermal folding of G-quadruplexes

Overview of Gray RD et al.

AuthorsGray RD  Chaires JB  
AffiliationJames Graham Brown Cancer Center   University of Louisville   505 S. Hancock St.   Louisville   KY 40202   USA.  
JournalMethods
Year 2012

Abstract


Thermodynamic studies of G-quadruplex stability are an essential complement to structures obtained by NMR or X-ray crystallography. An understanding of the energetics of quadruplex folding provides a necessary foundation for the physical interpretation of quadruplex formation and reactivity. While thermal denaturation methods are most commonly used to evaluate quadruplex stability, it is also possible to study folding using isothermal titration methods. G-quadruplex folding is tightly coupled to specific cation binding. We describe here protocols for monitoring the cation-driven quadruplex folding transition using circular dichroism or absorbance, and for determination of the distribution of free and bound cation using a fluorescence indicator. Together these approaches provide insight into quadruplex folding at constant temperature, and characterize the linkage between cation binding and folding.