NACDDB - The Web Server for DNA,RNA,and Hybrids Circular Dichroism Structure

Synthesis and biophysical characterization of oligonucleotides containing a 4'-selenonucleotide

Overview of Watts JK et al.

AuthorsWatts JK  Johnston BD  Jayakanthan K  Wahba AS  Pinto BM  Damha MJ  
AffiliationDepartment of Chemistry   McGill University   801 Sherbrooke Street West   Montreal   QC   Canada.  
JournalJ Am Chem Soc
Year 2008

Abstract


The first synthesis of oligonucleotides containing 4'-selenium-modified ribonucleotides (4'-Se-rN) is described. Four sequences containing 4'-Se-rT were successfully synthesized and compared with DNA and RNA oligonucleotides containing a dT, rT, or LNA insert in place of the 4'-Se-rT. The 4'-Se-rT behaved more like rT than dT in its effects on binding affinity, despite the DNA-like structure previously observed for the nucleoside, suggesting that a conformational switch occurs upon incorporation into an oligonucleotide. Incorporation of 4'-Se-rT into A-RNA and hybrid duplexes led to increased binding affinity, while incorporation into B-DNA destabilized the duplex to the same extent as an rT nucleotide.