Modomics - A Database of RNA Modifications
ID RNA Source/Gene Name SO term RNA Type RNA Subtype RNA Feature Organism Cellular localization Sequence (UNICODE)
124 tdbR00000555  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  eukaryotic cytosol   CUCUCGGUALCCAAGDD#GDDDAAGGCRCAAGACUGPAЧAPCUUGAGAD?GGGCGTPCGѢCUCGCCCCCGGGAGACCA
157 tdbR00000551  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  mitochondrion  GGAGGGAUUUUCAAUGUDGGDAGUUGGALPUGAGCUGUAЧACUCAAUGACUUAGGUCUUCAUAGGTPCAAUUCCUAUUCCCUUCACCA
653 tdbR00000554  SO:0000272 tRNA  Tyr  GPA  Scenedesmus obliquus  eukaryotic cytosol   CCCCUUGUAGCUCAGDD#GCAGAGCRGGAGACUGPAKAPCUCUAG7.CACUGGTPCGѢAUCCGGUCGAGGGGACCA
654 tdbR00000556  SO:0000272 tRNA  Tyr  GPA  Schizosaccharomyces pombe  eukaryotic cytosol   CUCCUGAUKGUGPAGDDGGDDAUCACACCCGGCUGPAЧACCGGUUG7U?GCUAGTPCGѢUUCUGGCUCAGGAGACCA
655 tdbR00000557  SO:0000272 tRNA  Tyr  GPA  Pichia jadinii  eukaryotic cytosol   CUCUCGGUKLCCAAGDD#GDDDAAGGCRPCAGACUGPAЧAPCUGAACAD?GGGCGTPCGѢAUCGCCCCCGAGAGACCA
656 tdbR00000558  SO:0000272 tRNA  Tyr  QPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUQPAKAPCCUUAG7UCACUGGUPCGѢAUCCGGUAGGUCGGACCA
657 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUGPAKAPCCUUAG7UCACUGGUPCGѢAUCCGGUAGGUCGGACCA
658 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus luteus  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUGPAKAPCCUUAG7XCACUGGUPCGѢAUCCGGUAGGUCGGACCA
659 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUGPAKAPCCUUAG7UCACUGGUPCGѢAUCCGGUAGGUCGGACCA
660 tdbR00000562  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUGPAKAPCCUUAG7UCGCUGGUPCGѢAUCCGGCAGGUCGGACCA
661 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus albus  eukaryotic cytosol   CCGACCUUALCUCAGDD#GUAGAGCRGAGGACUGPAKAPCCUUAG7XCACUGGUPCGѢAUCCGGUAGGUCGGACCA
662 tdbR00000564  SO:0000272 tRNA  Tyr  QPA  Drosophila melanogaster  eukaryotic cytosol   CCUUCGAUALCUCAGDDGGXAGAGCRGPGGACUQPAKAJCCAUAG7DCGCUGGTPCAѢAUCCGGCUCGAAGGACCA
663 tdbR00000565  SO:0000272 tRNA  Tyr  9PA  Bos taurus  eukaryotic cytosol   CCUUCLAUALCUCAGDDGGXUAGAGCRRAGGACU9PAKAZCCUUAG7D?GCUGGTPCGѢUUCCGGCUCGAAGGACCA
664 tdbR00000567  SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUCLAUALCUCAGDDGGXAGAGCRRAGGACU9PAKA]CCUUAG7D?GCUGGTPCGѢUUCCGGCUCGAAGGACCA
665   SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUCLAUALCUCAGCDGGXAGAGCRRAGGACU9PAKA]CCUUAG7D?GCUGGTPCGѢUUCCGGCUCGAAGGACCA
844 tdbR00000548  SO:0000272 tRNA  Tyr  GUA  Scenedesmus obliquus  plastid  GGGCCGAUGCCGAAGUN#GDUAAUGGGGCGGAPUGUA*APCCGCUGGUUACGCCUACGUUGGTPCGAAUCCGACUCGGCCCACCA
845 tdbR00000549  SO:0000272 tRNA  Tyr  QUA  Tetrahymena pyriformis  mitochondrion  GAGAUGGUGLCUGAGUGGDDAAAGCRGPAGACUQUAHAPCPAUJGGGUAUCCGUCGUCGGTPCGAGUCCGAUCCAUCUCACCA
846   SO:0000272 tRNA  Tyr  GUA  Neurospora crassa  mitochondrion  AGGAGGGUUCCGUUUGUUGGDAUGACGGRPUAAGCUGUAHACUUAAUGACUAAUUAGU?GUѴGAAGGTPCAAUUCCUUUCUCUCCUACCA
848 tdbR00000552  SO:0000272 tRNA  Tyr  .UA  Phaseolus vulgaris  mitochondrion  GGGAGAGUGGCCGAGD#GDCAAAAGCLACAGACU.UAHAPCUGUUGAAGUUUUUCUACGUAGGTPCGAAUCCUGCCUCUCCCACCA
849   SO:0000272 tRNA  Tyr  GUA  Asterias amurensis  mitochondrion  GGCAGGGUKGCAGAAѢGUDAAUGCACPAAAPUGUA*AUPUAUAAAUAAAGGUPUAAUUCCUUUUCUUGCCACCA
897 tdbD00003624  SO:0000272 tRNA  Tyr  QUA  Bos taurus  mitochondrion  GGUAAAAUKLCUGAGCAAAGCAUPAGACUQUA*APCUAAAGAUAGAGGUPUGACUCCUCUUUUUACCACCA
1221 LC530726.1  tRNA  Tyr  QUA  Homo sapiens  Mitochondrion  GGUAAAAUKLCUGAGUGAAGCAPPGGACUQUA*APCUAAAGA?AGGGGUUAGGCCUCUUUUUACCACCA
ID RNA Source/Gene Name SO term RNA Type RNA Subtype RNA Feature Organism Cellular localization Sequence (MODOMICS CODE)
124 tdbR00000555  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  eukaryotic cytosol   CUCUCGGUA2000002551GCCAAG2000008551U2000008551U2000090551GG2000008551U2000008551U2000008551UAAGGC2000022551GCAAGACUG2000009551UA2000061551AA2000009551UCUUGAGA2000008551U2000005551CGGGCG2000005551U2000009551UCG2000001551ACUCGCCCCCGGGAGACCA
157 tdbR00000551  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  mitochondrion  GGAGGGAUUUUCAAUGU2000008551UGG2000008551UAGUUGGA2000002551G2000009551UUGAGCUGUA2000061551AACUCAAUGACUUAGGUCUUCAUAGG2000005551U2000009551UCAAUUCCUAUUCCCUUCACCA
653 tdbR00000554  SO:0000272 tRNA  Tyr  GPA  Scenedesmus obliquus  eukaryotic cytosol   CCCCUUGUAGCUCAG2000008551U2000008551U2000090551GGCAGAGC2000022551GGGAGACUG2000009551UA2000001551GA2000009551UCUCUAG2000007551G2000000000NCACUGG2000005551U2000009551UCG2000001551AAUCCGGUCGAGGGGACCA
654 tdbR00000556  SO:0000272 tRNA  Tyr  GPA  Schizosaccharomyces pombe  eukaryotic cytosol   CUCCUGAU2000001551GGUG2000009551UAG2000008551U2000008551UGG2000008551U2000008551UAUCACACCCGGCUG2000009551UA2000061551AACCGGUUG2000007551GU2000005551CGCUAG2000005551U2000009551UCG2000001551AUUCUGGCUCAGGAGACCA
655 tdbR00000557  SO:0000272 tRNA  Tyr  GPA  Pichia jadinii  eukaryotic cytosol   CUCUCGGU2000001551G2000002551GCCAAG2000008551U2000008551U2000090551GG2000008551U2000008551U2000008551UAAGGC2000022551G2000009551UCAGACUG2000009551UA2000061551AA2000009551UCUGAACA2000008551U2000005551CGGGCG2000005551U2000009551UCG2000001551AAUCGCCCCCGAGAGACCA
656 tdbR00000558  SO:0000272 tRNA  Tyr  QPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACU2000042551G2000009551UA2000001551GA2000009551UCCUUAG2000007551GUCACUGGU2000009551UCG2000001551AAUCCGGUAGGUCGGACCA
657 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACUG2000009551UA2000001551GA2000009551UCCUUAG2000007551GUCACUGGU2000009551UCG2000001551AAUCCGGUAGGUCGGACCA
658 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus luteus  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACUG2000009551UA2000001551GA2000009551UCCUUAG2000007551G2000030551UCACUGGU2000009551UCG2000001551AAUCCGGUAGGUCGGACCA
659 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACUG2000009551UA2000001551GA2000009551UCCUUAG2000007551GUCACUGGU2000009551UCG2000001551AAUCCGGUAGGUCGGACCA
660 tdbR00000562  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACUG2000009551UA2000001551GA2000009551UCCUUAG2000007551GUCGCUGGU2000009551UCG2000001551AAUCCGGCAGGUCGGACCA
661 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus albus  eukaryotic cytosol   CCGACCUUA2000002551GCUCAG2000008551U2000008551U2000090551GGUAGAGC2000022551GGAGGACUG2000009551UA2000001551GA2000009551UCCUUAG2000007551G2000030551UCACUGGU2000009551UCG2000001551AAUCCGGUAGGUCGGACCA
662 tdbR00000564  SO:0000272 tRNA  Tyr  QPA  Drosophila melanogaster  eukaryotic cytosol   CCUUCGAUA2000002551GCUCAG2000008551U2000008551UGG2000030551UAGAGC2000022551GG2000009551UGGACU2000042551G2000009551UA2000001551GA2000090551UCCAUAG2000007551G2000008551UCGCUGG2000005551U2000009551UCA2000001551AAUCCGGCUCGAAGGACCA
663 tdbR00000565  SO:0000272 tRNA  Tyr  9PA  Bos taurus  eukaryotic cytosol   CCUUC2000002551GAUA2000002551GCUCAG2000008551U2000008551UGG2000030551UUAGAGC2000022551G2000022551GAGGACU2000104551G2000009551UA2000001551GA2000909551UCCUUAG2000007551G2000008551U2000005551CGCUGG2000005551U2000009551UCG2000001551AUUCCGGCUCGAAGGACCA
664 tdbR00000567  SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUC2000002551GAUA2000002551GCUCAG2000008551U2000008551UGG2000030551UAGAGC2000022551G2000022551GAGGACU2000104551G2000009551UA2000001551GA2000019551UCCUUAG2000007551G2000008551U2000005551CGCUGG2000005551U2000009551UCG2000001551AUUCCGGCUCGAAGGACCA
665   SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUC2000002551GAUA2000002551GCUCAGC2000008551UGG2000030551UAGAGC2000022551G2000022551GAGGACU2000104551G2000009551UA2000001551GA2000019551UCCUUAG2000007551G2000008551U2000005551CGCUGG2000005551U2000009551UCG2000001551AUUCCGGCUCGAAGGACCA
844 tdbR00000548  SO:0000272 tRNA  Tyr  GUA  Scenedesmus obliquus  plastid  GGGCCGAUGCCGAAGU2000000999U2000090551GG2000008551UUAAUGGGGCGGA2000009551UUGUA2002161551AA2000009551UCCGCUGGUUACGCCUACGUUGG2000005551U2000009551UCGAAUCCGACUCGGCCCACCA
845 tdbR00000549  SO:0000272 tRNA  Tyr  QUA  Tetrahymena pyriformis  mitochondrion  GAGAUGGUG2000002551GCUGAGUGG2000008551U2000008551UAAAGC2000022551GG2000009551UAGACU2000042551GUA2000000999AA2000009551UC2000009551UAU2000090551UGGGUAUCCGUCGUCGG2000005551U2000009551UCGAGUCCGAUCCAUCUCACCA
846   SO:0000272 tRNA  Tyr  GUA  Neurospora crassa  mitochondrion  AGGAGGGUUCCGUUUGUUGG2000008551UAUGACGG2000022551G2000009551UUAAGCUGUA2000000999AACUUAAUGACUAAUUAGU2000005551CGU2000000999CGAAGG2000005551U2000009551UCAAUUCCUUUCUCUCCUACCA
848 tdbR00000552  SO:0000272 tRNA  Tyr  .UA  Phaseolus vulgaris  mitochondrion  GGGAGAGUGGCCGAG2000008551U2000090551GG2000008551UCAAAAGC2000002551GACAGACU2000000000NUA2000000999AA2000009551UCUGUUGAAGUUUUUCUACGUAGG2000005551U2000009551UCGAAUCCUGCCUCUCCCACCA
849   SO:0000272 tRNA  Tyr  GUA  Asterias amurensis  mitochondrion  GGCAGGGU2000001551GGCAGAA2000001551AGU2000008551UAAUGCAC2000009551UAAA2000009551UUGUA2002161551AAU2000009551UUAUAAAUAAAGGU2000009551UUAAUUCCUUUUCUUGCCACCA
897 tdbD00003624  SO:0000272 tRNA  Tyr  QUA  Bos taurus  mitochondrion  GGUAAAAU2000001551G2000002551GCUGAGCAAAGCAU2000009551UAGACU2000042551GUA2002161551AA2000009551UCUAAAGAUAGAGGU2000009551UUGACUCCUCUUUUUACCACCA
1221 LC530726.1  tRNA  Tyr  QUA  Homo sapiens  Mitochondrion  GGUAAAAU2000001551G2000002551GCUGAGUGAAGCA2000009551U2000009551UGGACU2000042551GUA2002161551AA2000009551UCUAAAGA2000005551CAGGGGUUAGGCCUCUUUUUACCACCA
ID RNA Source/Gene Name SO term RNA Type RNA Subtype RNA Feature Organism Cellular localization Sequence (SHORT NAME)
124 tdbR00000555  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  eukaryotic cytosol   CUCUCGGUApm2GCCAAGpDpDpGmGpDpDpDAAGGCpm2,2GCAAGACUGpYApi6AApYCUUGAGApDpm5CGGGCGpm5UpYCGpm1ACUCGCCCCCGGGAGACCA
157 tdbR00000551  SO:0000272 tRNA  Tyr  GUA  Saccharomyces cerevisiae  mitochondrion  GGAGGGAUUUUCAAUGUpDGGpDAGUUGGApm2GpYUGAGCUGUApi6AACUCAAUGACUUAGGUCUUCAUAGGpm5UpYCAAUUCCUAUUCCCUUCACCA
653 tdbR00000554  SO:0000272 tRNA  Tyr  GPA  Scenedesmus obliquus  eukaryotic cytosol   CCCCUUGUAGCUCAGpDpDpGmGCAGAGCpm2,2GGGAGACUGpYApm1GApYCUCUAGpm7GNCACUGGpm5UpYCGpm1AAUCCGGUCGAGGGGACCA
654 tdbR00000556  SO:0000272 tRNA  Tyr  GPA  Schizosaccharomyces pombe  eukaryotic cytosol   CUCCUGAUpm1GGUGpYAGpDpDGGpDpDAUCACACCCGGCUGpYApi6AACCGGUUGpm7GUpm5CGCUAGpm5UpYCGpm1AUUCUGGCUCAGGAGACCA
655 tdbR00000557  SO:0000272 tRNA  Tyr  GPA  Pichia jadinii  eukaryotic cytosol   CUCUCGGUpm1Gpm2GCCAAGpDpDpGmGpDpDpDAAGGCpm2,2GpYCAGACUGpYApi6AApYCUGAACApDpm5CGGGCGpm5UpYCGpm1AAUCGCCCCCGAGAGACCA
656 tdbR00000558  SO:0000272 tRNA  Tyr  QPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUpQpYApm1GApYCCUUAGpm7GUCACUGGUpYCGpm1AAUCCGGUAGGUCGGACCA
657 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Triticum aestivum  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUGpYApm1GApYCCUUAGpm7GUCACUGGUpYCGpm1AAUCCGGUAGGUCGGACCA
658 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus luteus  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUGpYApm1GApYCCUUAGpm7Gpacp3UCACUGGUpYCGpm1AAUCCGGUAGGUCGGACCA
659 tdbR00000559  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUGpYApm1GApYCCUUAGpm7GUCACUGGUpYCGpm1AAUCCGGUAGGUCGGACCA
660 tdbR00000562  SO:0000272 tRNA  Tyr  GPA  Nicotiana rustica  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUGpYApm1GApYCCUUAGpm7GUCGCUGGUpYCGpm1AAUCCGGCAGGUCGGACCA
661 tdbR00000560  SO:0000272 tRNA  Tyr  GPA  Lupinus albus  eukaryotic cytosol   CCGACCUUApm2GCUCAGpDpDpGmGUAGAGCpm2,2GGAGGACUGpYApm1GApYCCUUAGpm7Gpacp3UCACUGGUpYCGpm1AAUCCGGUAGGUCGGACCA
662 tdbR00000564  SO:0000272 tRNA  Tyr  QPA  Drosophila melanogaster  eukaryotic cytosol   CCUUCGAUApm2GCUCAGpDpDGGpacp3UAGAGCpm2,2GGpYGGACUpQpYApm1GApUmCCAUAGpm7GpDCGCUGGpm5UpYCApm1AAUCCGGCUCGAAGGACCA
663 tdbR00000565  SO:0000272 tRNA  Tyr  9PA  Bos taurus  eukaryotic cytosol   CCUUCpm2GAUApm2GCUCAGpDpDGGpacp3UUAGAGCpm2,2Gpm2,2GAGGACUpgalQpYApm1GApYmCCUUAGpm7GpDpm5CGCUGGpm5UpYCGpm1AUUCCGGCUCGAAGGACCA
664 tdbR00000567  SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUCpm2GAUApm2GCUCAGpDpDGGpacp3UAGAGCpm2,2Gpm2,2GAGGACUpgalQpYApm1GApm1YCCUUAGpm7GpDpm5CGCUGGpm5UpYCGpm1AUUCCGGCUCGAAGGACCA
665   SO:0000272 tRNA  Tyr  9PA  Homo sapiens  eukaryotic cytosol   CCUUCpm2GAUApm2GCUCAGCpDGGpacp3UAGAGCpm2,2Gpm2,2GAGGACUpgalQpYApm1GApm1YCCUUAGpm7GpDpm5CGCUGGpm5UpYCGpm1AUUCCGGCUCGAAGGACCA
844 tdbR00000548  SO:0000272 tRNA  Tyr  GUA  Scenedesmus obliquus  plastid  GGGCCGAUGCCGAAGUxUpGmGpDUAAUGGGGCGGApYUGUApms2i6AApYCCGCUGGUUACGCCUACGUUGGpm5UpYCGAAUCCGACUCGGCCCACCA
845 tdbR00000549  SO:0000272 tRNA  Tyr  QUA  Tetrahymena pyriformis  mitochondrion  GAGAUGGUGpm2GCUGAGUGGpDpDAAAGCpm2,2GGpYAGACUpQUAxAApYCpYAUpUmGGGUAUCCGUCGUCGGpm5UpYCGAGUCCGAUCCAUCUCACCA
846   SO:0000272 tRNA  Tyr  GUA  Neurospora crassa  mitochondrion  AGGAGGGUUCCGUUUGUUGGpDAUGACGGpm2,2GpYUAAGCUGUAxAACUUAAUGACUAAUUAGUpm5CGUxCGAAGGpm5UpYCAAUUCCUUUCUCUCCUACCA
848 tdbR00000552  SO:0000272 tRNA  Tyr  .UA  Phaseolus vulgaris  mitochondrion  GGGAGAGUGGCCGAGpDpGmGpDCAAAAGCpm2GACAGACUNUAxAApYCUGUUGAAGUUUUUCUACGUAGGpm5UpYCGAAUCCUGCCUCUCCCACCA
849   SO:0000272 tRNA  Tyr  GUA  Asterias amurensis  mitochondrion  GGCAGGGUpm1GGCAGAApm1AGUpDAAUGCACpYAAApYUGUApms2i6AAUpYUAUAAAUAAAGGUpYUAAUUCCUUUUCUUGCCACCA
897 tdbD00003624  SO:0000272 tRNA  Tyr  QUA  Bos taurus  mitochondrion  GGUAAAAUpm1Gpm2GCUGAGCAAAGCAUpYAGACUpQUApms2i6AApYCUAAAGAUAGAGGUpYUGACUCCUCUUUUUACCACCA
1221 LC530726.1  tRNA  Tyr  QUA  Homo sapiens  Mitochondrion  GGUAAAAUpm1Gpm2GCUGAGUGAAGCApYpYGGACUpQUApms2i6AApYCUAAAGApm5CAGGGGUUAGGCCUCUUUUUACCACCA

Explanation:

Please note that the modifications are based on experimental data, which may not always cover the entire sequence. Thus, modifications existing in vivo may be missing.