Modification:	Tool Name:	Flowcell:	Reference:	Github:	Tool or Basecaller:	Comments:
any	TOMBO	RNA002	https://doi.org/10.1101/094672	https://github.com/nanoporetech/tombo	tool
any	magnipore	RNA002	https://doi.org/10.1101/2023.03.17.533105	https://github.com/JannesSP/magnipore	tool
m6A	Dorado rna004_130bps_hac@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
m6A	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
m6A	MINES	RNA002	10.1261/RNA.072785.119	https://github.com/YeoLab/MINES.git	tool
m6A	MODKIT	Both	https://nanoporetech.com/resource-centre/accessible-and-robust-base-modification-analysis-with-modkit-the-multi-tool-for-nanopore-epigenetics	https://github.com/nanoporetech/modkit	tool
m6A	Nanom6A	RNA002	https://doi.org/10.1186/s13059-020-02241-7	https://github.com/gaoyubang/nanom6A	tool
m6A	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
m6A	xPore	Both	10.1038/s41587-021-00949-w	https://github.com/GoekeLab/xpore	tool
m6A	m6Anet	Boh	10.1038/s41592-022-01666-1	https://github.com/GoekeLab/m6anet	tool
m6A	nanopolish	RNA002	https://doi.org/10.1038/nmeth.3444	https://github.com/jts/nanopolish	tool
m6A	megalodon	Both	//	https://github.com/nanoporetech/megalodon	tool	Replaced by Dorado modkit
m6A	DiffErr	RNA002	https://doi.org/10.7554/eLife.49658	https://github.com/bartongroup/differr_nanopore_DRS	tool
m6A	DRUMMER	RNA002	https://doi.org/10.1038/s41467-020-19787-6	https://github.com/DepledgeLab/DRUMMER	tool
m6A	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
m6A	EpiNano	RNA002	https://doi.org/10.1038/s41467-019-11713-9	https://github.com/novoalab/EpiNano	tool
m6A	Yanocomp	RNA002	10.1101/2021.06.15.448494	https://github.com/bartongroup/yanocomp	tool
m6A	NanoSPA	RNA002	10.1038/s41587-024-02135-0	https://github.com/sihaohuanguc/NanoSPA	tool
m6A	m6ABasecaller	Both	https://doi.org/10.1186/s13059-025-03498-6	https://github.com/novoalab/m6ABasecaller	Basecalling model
m6A	Xron	Both	10.1101/2024.01.06.574484	https://github.com/haotianteng/Xron	Basecalling model
m6A	RedNano	RNA002	https://doi.org/10.1093/bioinformatics/btae375	https://github.com/Derryxu/RedNano	tool
m6A	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m6A	DENA	RNA002	https://doi.org/10.1186/s13059-021-02598-3	https://github.com/weir12/DENA	tool
m6A	SingleMod	Both	https://doi.org/10.1038/s41467-025-60447-4	https://github.com/xieyy46/SingleMod-v1	tool
m6A	m6ATM	RNA002	https://doi.org/10.1093/bib/bbae529	https://github.com/poigit/m6ATM	tool
m6A	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
m6A	pum6a	RNA002	https://doi.org/10.1038/s41467-025-56173-6	https://github.com/liuchuwei/pum6a	tool
m6A	ModiDeC	Both	https://doi.org/10.1093/nar/gkaf673	https://github.com/mem3nto0/ModiDeC-RNA-modification-classifier	tool
m6A	CHEUI	RNA002	https://doi.org/10.1038/s41467-024-47953-7	https://github.com/comprna/CHEUI	tool
m6A	Psi-co-mAFiA	RNA002	https://doi.org/10.1038/s41467-024-47661-2	https://github.com/dieterich-lab/psi-co-mAFiA	tool
m6A	MultiNano	RNA002	https://doi.org/10.1101/2025.08.04.668591	https://github.com/zhangjun640/MultiNano	tool
m6A	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
m6A	SWARM	Both	//	https://github.com/comprna/SWARM	tool
m6A	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
m6A	RMNet	RNA002	https://doi.org/10.2174/0113894501405283250627072052	https://github.com/liqingwen98/RMNet	tool
m6A	JACUSA2	Both	https://doi.org/10.1186/s13059-022-02676-0	https://github.com/dieterich-lab/JACUSA2	tool
m6A	IL-AD	RNA002	https://doi.org/10.1038/s41467-024-51639-5	https://github.com/wangziyuan66/IL-AD	tool
m6A	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
Y	Dorado rna004_130bps_hac@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
Y	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
Y	NanoSPA	RNA002	10.1038/s41587-024-02135-0	https://github.com/sihaohuanguc/NanoSPA	tool	issue aperta sull’utilizzo con la nuova chimica e POD5
Y	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
Y	ModiDeC	Both	https://doi.org/10.1093/nar/gkaf673	https://github.com/mem3nto0/ModiDeC-RNA-modification-classifier	tool
Y	Psi-co-mAFiA	RNA002	https://doi.org/10.1038/s41467-024-47661-2	https://github.com/dieterich-lab/psi-co-mAFiA	tool
Y	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
Y	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
Y	SWARM	Both	//	https://github.com/comprna/SWARM	tool
Y	Penguin	RNA002	10.1016/j.ymeth.2022.02.005	https://github.com/Janga-Lab/Penguin	tool
Y	EpiNano	RNA002	https://doi.org/10.1038/s41467-019-11713-9	https://github.com/novoalab/EpiNano	tool
Y	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
Y	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
Y	NanoPsu	RNA002	10.5281/zenodo.5711328	https://github.com/sihaohuanguc/Nanopore_psU	tool
Y	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
Y	IL-AD	RNA002	https://doi.org/10.1038/s41467-024-51639-5	https://github.com/wangziyuan66/IL-AD	tool
Y	NanoMUD	RNA002	10.1016/j.ijbiomac.2024.132433	https://github.com/ABOMSBI/NanoMUD	tool
Y	modQuant	RNA002	https://doi.org/10.1038/s41598-024-72994-9	https://github.com/wanunulab/ModQuant	tool
Y	Mod-p ID	RNA002	https://doi.org/10.1038/s41467-023-35858-w	https://github.com/RouhanifardLab/PsiNanopore	tool
Y	PsNano	RNA002	//	https://github.com/hsdoaa/PsNano	tool
Y	NanoPsiPy	RNA002	https://doi.org/10.1101/2024.01.31.578250	https://github.com/vetmohit89/NanoPsiPy	tool
Y	JACUSA2	Both	https://doi.org/10.1186/s13059-022-02676-0	https://github.com/dieterich-lab/JACUSA2	tool
Y	NanoConsensus	RNA002	https://doi.org/10.1038/s41467-024-54368-x	https://github.com/novoalab/NanoConsensus	tool
Y	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
Y	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
I	Dorado rna004_130bps_hac@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
I	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
I	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
I	ModiDeC	Both	https://doi.org/10.1093/nar/gkaf673	https://github.com/mem3nto0/ModiDeC-RNA-modification-classifier	tool
I	JACUSA2	Both	https://doi.org/10.1186/s13059-022-02676-0	https://github.com/dieterich-lab/JACUSA2	tool
I	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
I	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
I	DinoPORE	RNA002	https://doi.org/10.1038/s41592-022-01513-3	https://github.com/darelab2014/Dinopore	tool
I	DeepEdit	RNA002	https://doi.org/10.1186/s13059-023-02921-0	https://github.com/weir12/DeepEdit	tool
I	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
I	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
I	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
m5C	Dorado rna004_130bps_hac@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
m5C	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/	//	Basecalling model
m5C	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
m5C	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
m5C	CHEUI	RNA002	https://doi.org/10.1038/s41467-024-47953-7	https://github.com/comprna/CHEUI	tool
m5C	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
m5C	IL-AD	RNA002	https://doi.org/10.1038/s41467-024-51639-5	https://github.com/wangziyuan66/IL-AD	tool
m5C	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m5C	SWARM	Both	//	https://github.com/comprna/SWARM	tool
m5C	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
m5C	modCnet	RNA002	https://doi.org/10.1016/j.ijbiomac.2025.140863	https://github.com/yulab2021/modCnet	tool
m5C	NanoConsensus	RNA002	https://doi.org/10.1038/s41467-024-54368-x	https://github.com/novoalab/NanoConsensus	tool
m5C	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m5C	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
hm5C	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
hm5C	IL-AD	RNA002	https://doi.org/10.1038/s41467-024-51639-5	https://github.com/wangziyuan66/IL-AD	tool
hm5C	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
f5C	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
Am	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/		Basecalling model
Am	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
Am	NanoNm	RNA002	10.1016/j.molcel.2024.04.011	https://github.com/kaifuchenlab/NanoNm	tool
Am	Nm-nano	RNA002	https://doi.org/10.1080/15476286.2024.2352192	https://github.com/Janga-Lab/Nm-Nano	tool
Am	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
Am	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
Am	NanoConsensus	RNA002	https://doi.org/10.1038/s41467-024-54368-x	https://github.com/novoalab/NanoConsensus	tool
Am	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
Cm	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/		Basecalling model
Cm	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
Cm	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
Cm	NanoNm	RNA002	10.1016/j.molcel.2024.04.011	https://github.com/kaifuchenlab/NanoNm	tool
Cm	Nm-nano	RNA002	https://doi.org/10.1080/15476286.2024.2352192	https://github.com/Janga-Lab/Nm-Nano	tool
Cm	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
Cm	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
Gm	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/		Basecalling model
Gm	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
Gm	ModiDeC	Both	https://doi.org/10.1093/nar/gkaf673	https://github.com/mem3nto0/ModiDeC-RNA-modification-classifier	tool
Gm	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
Gm	NanoNm	RNA002	10.1016/j.molcel.2024.04.011	https://github.com/kaifuchenlab/NanoNm	tool
Gm	Nm-nano	RNA002	https://doi.org/10.1080/15476286.2024.2352192	https://github.com/Janga-Lab/Nm-Nano	tool
Gm	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
Gm	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
Um	Dorado rna004_130bps_sup@v5.2.0	RNA004	https://software-docs.nanoporetech.com/dorado/1.1.0/models/list/		Basecalling model
Um	nanoRMS/nanoRMS2	RNA002	https://doi.org/10.1038/s41587-021-00915-6	https://github.com/novoalab/nanoRMS	tool	Detection of RNA modification stoichiometry
Um	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
Um	NanoNm	RNA002	10.1016/j.molcel.2024.04.011	https://github.com/kaifuchenlab/NanoNm	tool
Um	Nm-nano	RNA002	https://doi.org/10.1080/15476286.2024.2352192	https://github.com/Janga-Lab/Nm-Nano	tool
Um	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
Um	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m1A	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
m1A	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m1A	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
m1A	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
m1A	IL-AD	RNA002	https://doi.org/10.1038/s41467-024-51639-5	https://github.com/wangziyuan66/IL-AD	tool
m1A	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m1A	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
m2A	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m1G	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m1G	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
m2G	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m2G	EpiNano	RNA002	https://doi.org/10.1038/s41467-019-11713-9	https://github.com/novoalab/EpiNano	tool
m2G	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m7G	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
m7G	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m7G	TandemMod	RNA002	https://doi.org/10.1038/s41467-024-48437-4	https://github.com/yulab2021/TandemMod	tool
m7G	EpiNano	RNA002	https://doi.org/10.1038/s41467-019-11713-9	https://github.com/novoalab/EpiNano	tool
m7G	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
m7G	NanoConsensus	RNA002	https://doi.org/10.1038/s41467-024-54368-x	https://github.com/novoalab/NanoConsensus	tool
m7G	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m7G	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
ac4C	RNANO	RNA002	https://doi.org/10.1101/2025.03.01.640267	https://github.com/abhhba999/RNANO	tool
ac4C	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
ac4C	modCnet	RNA002	https://doi.org/10.1016/j.ijbiomac.2025.140863	https://github.com/yulab2021/modCnet	tool
ac4C	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m3U	EpiNano	RNA002	https://doi.org/10.1038/s41467-019-11713-9	https://github.com/novoalab/EpiNano	tool
m5U	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m5U	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
mo5U	ELIGOS/ELIGOS2	RNA002	https://doi.org/10.1093/nar/gkaa620	https://gitlab.com/piroonj/eligos2	tool
Q	JACUSA2	Both	https://doi.org/10.1186/s13059-022-02676-0	https://github.com/dieterich-lab/JACUSA2	tool
Q	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
m6,6A	NanoCompore	Both	https://doi.org/10.1038/s41467-021-27393-3	https://github.com/tleonardi/nanocompore	tool
m6,6A	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m6,6A	NanoConsensus	RNA002	https://doi.org/10.1038/s41467-024-54368-x	https://github.com/novoalab/NanoConsensus	tool
m4Cm	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m1acp3Y	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
m3Y	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
ho5C	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
D	NanoDOC	RNA002	https://doi.org/10.1101/2020.09.13.295089	https://github.com/uedaLabR/nanoDoc	tool
D	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
m2,2G	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
yW	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
t6A	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
k2C	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
mcm5U	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
mcm5U	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
mcm5s2U	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
mcm5s2U	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
ncm5U	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
ncm5U	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model
ncm5Um	Nano-tRNAseq	Both	https://doi.org/10.1038/s41587-023-01743-6	https://github.com/novoalab/Nano-tRNAseq	tool
i6A	MoDorado	RNA004	10.1093/nar/gkaf795	https://github.com/KleistLab/MoDorado	Basecalling model