General Data

RNA Type	tRNA
SOTerm	SO:0000258
Original Source	tdbR00000170
Secondary Structure	(((((((..((((.....[...)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGUCUCUUKLCCCAGDDGGDDAAGGCACCGUGCUIAU6ACGCGGGGAD?AGCGGTPCGѢUCCCGCUAGAGACCACCA
Sequence (SHORT NAMES ENCODING)	GGUCUCUUpm1Gpm2GCCCAGpDpDGGpDpDAAGGCACCGUGCUpIAUpt6AACGCGGGGApDpm5CAGCGGpm5UpYCGpm1AUCCCGCUAGAGACCACCA
Sequence (MODOMICS CODE ENCODING)	GGUCUCUU2000001551G2000002551GCCCAG2000008551U2000008551UGG2000008551U2000008551UAAGGCACCGUGCU2000009551AAU2000062551AACGCGGGGA2000008551U2000005551CAGCGG2000005551U2000009551UCG2000001551AUCCCGCUAGAGACCACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGUCUCUUKLCCCAGDD-GGDD-AAGGCACCGUGCUIAU6ACGCGGGGAD?-------------------AGCGGTPCGѢUCCCGCUAGAGACCACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Alignment	9	10	16	17	20	20A	34	37	45B	45C	54	55	58
Position in the Sequence	9	10	16	17	20	21	35	38	48	49	55	56	59
Modification Positions	m1G	m2G	D	D	D	D	I	t6A	D	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS