General Data

RNA Type	tRNA
SOTerm	SO:0000273
Original Source	tdbR00000474
Secondary Structure	(((((((..(((.....[....))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGUJCCAUAGUGPAGCGGDNAUCACʆPCUGCPUNACACGCAGAAG7D?UCCGGTPCGѢUCCCGGAUGGAACCACCA
Sequence (SHORT NAMES ENCODING)	GGUpUmCCAUAGUGpYAGCGGpDxUAUCACxGpYCUGCpYUxUACACGCAGAAGpm7GpDpm5CUCCGGpm5UpYCGpm1AUCCCGGAUGGAACCACCA
Sequence (MODOMICS CODE ENCODING)	GGU2000090551UCCAUAGUG2000009551UAGCGG2000008551U2000000999UAUCAC2000000999G2000009551UCUGC2000009551UU2000000999UACACGCAGAAG2000007551G2000008551U2000005551CUCCGG2000005551U2000009551UCG2000001551AUCCCGGAUGGAACCACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGUJCCAUAGUGPAGC--GGDN-AUCACʆPCUGCPUNACACGCAGAAG7D?-------------------UCCGGTPCGѢUCCCGGAUGGAACCACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Alignment	4	13	20	20A	26	27	32	34	45A	45B	45C	54	55	58
Position in the Sequence	4	13	19	20	26	27	32	34	46	47	48	54	55	58
Modification Positions	Um	Y	D	xU	xG	Y	Y	xU	m7G	D	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS