General Data

RNA Type	tRNA
SOTerm	SO:0000257
Original Source	tdbR00000040
Secondary Structure	(((((((...((.....[...))..(((((.......)))))......((((..]....)))).)))))))....
Sequence (UNICHARACTER ENCODING)	GGUGCCGUALCGPAGD#GCA.CG.GACUCUBU8UCAAAGAGUGG7A?.UGAGTPCGѢUACUCAACGGCACCGCCA
Sequence (SHORT NAMES ENCODING)	GGUGCCGUApm2GCGpYAGpDpGmGCANCGNGACUCUpCmUpmanQUCAAAGAGUGGpm7GApm5CNUGAGpm5UpYCGpm1AUACUCAACGGCACCGCCA
Sequence (MODOMICS CODE ENCODING)	GGUGCCGUA2000002551GCG2000009551UAG2000008551U2000090551GGCA2000000000NCG2000000000NGACUCU2000090551CU2000106551GUCAAAGAGUGG2000007551GA2000005551C2000000000NUGAG2000005551U2000009551UCG2000001551AUACUCAACGGCACCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGUGCCGUALCGPAGD--#GC--A.CG.GACUCUBU8UCAAAGAGUGG7A?-------------------.UGAGTPCGѢUACUCAACGGCACCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	10	13	16	18	22	25	32	34	45A	45C	49	54	55	58
Position in the sequence	10	13	16	17	21	24	31	33	45	47	48	53	54	57
Modification positions	m2G	Y	D	Gm	N	N	Cm	manQ	m7G	m5C	N	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS