Modomics - A Database of RNA Modifications

General Data

RNA Type other
Original Source 2DLC_A
Sequence (UNICHARACTER ENCODING) UCUCGGUALCCAAGU#GGAAGGCRCAAGAUGPAЧAPCUUGAGGU?GGGCGTPCGѢCUCGCCCCCGGGAGACCA
Sequence (SHORT NAMES ENCODING) UCUCGGUApm2GCCAAGUpGmGGAAGGCpm2,2GCAAGAUGpYApi6AApYCUUGAGGUpm5CGGGCGpm5UpYCGpm1ACUCGCCCCCGGGAGACCA
Sequence (MODOMICS CODE ENCODING) UCUCGGUA2000002551GCCAAGU2000090551GGGAAGGC2000022551GCAAGAUG2000009551UA2000061551AA2000009551UCUUGAGGU2000005551CGGGCG2000005551U2000009551UCG2000001551ACUCGCCCCCGGGAGACCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 8 15 23 31 33 35 44 51 54
Modification positions pm2G pGm pm2,2G pY pi6A pY pm5C pY pm1A
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS