General Data

RNA Type	tRNA
SOTerm	SO:0000273
Original Source	tdbR00000464
Secondary Structure	(((((((..((((.....[...)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGUUUCGUKGUCPAGDCGGDDAUGGCAPCUGCPUIACACGCAGAAC7DC?CCAGTPCGѢUCCUGGGCGAAAUCACCA
Sequence (SHORT NAMES ENCODING)	GGUUUCGUpm1GGUCpYAGpDCGGpDpDAUGGCApYCUGCpYUpIACACGCAGAACpm7GpDCpm5CCCAGpm5UpYCGpm1AUCCUGGGCGAAAUCACCA
Sequence (MODOMICS CODE ENCODING)	GGUUUCGU2000001551GGUC2000009551UAG2000008551UCGG2000008551U2000008551UAUGGCA2000009551UCUGC2000009551UU2000009551AACACGCAGAAC2000007551G2000008551UC2000005551CCCAG2000005551U2000009551UCG2000001551AUCCUGGGCGAAAUCACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGUUUCGUKGUCPAGDC-GGDD-AUGGCAPCUGCPUIACACGCAGAAC7DC-------------------?CCAGTPCGѢUCCUGGGCGAAAUCACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	9	13	16	20	20A	27	32	34	45A	45B	49	54	55	58
Position in the sequence	9	13	16	20	21	28	33	35	47	48	50	55	56	59
Modification positions	m1G	Y	D	D	D	Y	Y	I	m7G	D	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS