General Data

RNA Type	tRNA
SOTerm	SO:0000257
Original Source
Secondary Structure	.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Sequence (UNICHARACTER ENCODING)	TCCTCGTTѢGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA
Sequence (SHORT NAMES ENCODING)	pm5UCCpm5UCGpm5Upm5Upm1AGpm5UApm5UAGpm5UGGpm5UGAGpm5UApm5UCCCCGCCpm5UGpm5UCACGCGGGAGACCGGGGpm5Upm5UCGApm5Upm5UCCCCGACGGGGAGCCA
Sequence (MODOMICS CODE ENCODING)	2000005551UCC2000005551UCG2000005551U2000005551U2000001551AG2000005551UA2000005551UAG2000005551UGG2000005551UGAG2000005551UA2000005551UCCCCGCC2000005551UG2000005551UCACGCGGGAGACCGGGG2000005551U2000005551UCGA2000005551U2000005551UCCCCGACGGGGAGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-TCCTCGTTѢGTATAGT--GGTG-AGTATCCCCGCCTGTCACGCGGGAGAC--------------------CGGGGTTCGATTCCCCGACGGGGAGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Alignment	1	4	7	8	9	11	13	16	20	23	25	33	35	54	55	59	60
Position in the Sequence	1	4	7	8	9	11	13	16	19	23	25	33	35	53	54	58	59
Modification Positions	m5U	m5U	m5U	m5U	m1A	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS