General Data

RNA Type	tRNA
SOTerm	SO:0000265
Original Source
Secondary Structure	.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Sequence (UNICHARACTER ENCODING)	GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTT[ATCTGAGGGTCCAGGGTTCAѢGTCCCTGTTCGGGCGCCA
Sequence (SHORT NAMES ENCODING)	GCCCGGApm5UAGCpm5UCAGpm5UCGGpm5UAGAGCApm5UCAGACpm5Upm5Upm5Upm5Upms2t6AApm5UCpm5UGAGGGpm5UCCAGGGpm5Upm5UCApm1AGpm5UCCCpm5UGpm5Upm5UCGGGCGCCA
Sequence (MODOMICS CODE ENCODING)	GCCCGGA2000005551UAGC2000005551UCAG2000005551UCGG2000005551UAGAGCA2000005551UCAGAC2000005551U2000005551U2000005551U2000005551U2002162551AA2000005551UC2000005551UGAGGG2000005551UCCAGGG2000005551U2000005551UCA2000001551AG2000005551UCCC2000005551UG2000005551U2000005551UCGGGCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GCCCGGATAGCTCAGTC-GGT--AGAGCATCAGACTTTT[ATCTGAGGGTC-------------------CAGGGTTCAѢGTCCCTGTTCGGGCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Alignment	8	12	16	20	27	33	34	35	36	37	39	41	45B	54	55	58	60	64	66	67
Position in the Sequence	8	12	16	20	27	33	34	35	36	37	39	41	47	54	55	58	60	64	66	67
Modification Positions	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	ms2t6A	m5U	m5U	m5U	m5U	m5U	m1A	m5U	m5U	m5U	m5U
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS