Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000422077
Gene ID: ENSG00000157036
Gene Name: EXOG
Sequence (UNICHARACTER ENCODING) AAAAGGCCGGUACCUCGGGCAAGAUGGCUAUCAAGAGUAUCGCUUCCCGCCUCCGGGGUUCCCGUCGUUUUCUGAGCGGCUUCGUGGCUGGGGCUGUAGUGGGCGCUGCGGGAGCUGGGCUCGCGGCCCUGCAGUUCUUCCGGAGUCAGGGCGCUGAGGGAGCGUUGACAGGGAAGCAGCCGGAUGGUGAUGCAGACAGAAAGCAUUGUAAAUUUAAGCCUGAUCCCAAUAUCCCUCCAACCUUCAGUGCCUUCAAUGAAGAUUAUGUUGGAAGUGGGUGGUCACGAGGACACAUGGCUCCAGCAGGAAAUAACAAAUUUUCAAGUAAAGCCAUGGCUGAAACCUUUUACCUUUCUAACAUUGUGCCUCAGGAUUUUGAUAAUAAUUCUGGAUAUUGGAACAGAAUAGAAAUGUACUGUCGAGAGCUGACAGAAAGGUUUGAAGAUGUUUGGGUGGUAUCUGGGCCUUUGACCUUACCUCAGACUAGAGGCGAUGGAAAGAAAAUAGUUAGUUACCAGGUGAUUGGCGAGGACAACGUGGCAGUCCCCUCACACCUPUAUAAGGUAAUCCUGGCCCGCAGAAGCUCAGUAUCUACCGAACCACUGGCGCUAGGGGCCUUUGUGGUACCCAAUGAAGCCAUCGGCUUCCAGCCCCAGUUAACUGAAUUCCAAGUGAGCCUCCAGGACCUAGAGAAGUUGUCAGGЖCUGGUGUUUUUUCCUCAUUUGGAUAGAЖCUAGUGAUAUCCGGAAUAUCUGCUCUGUGGЖCACCUGUAAGCUCCUGGAUUUCCAGGAGUUCACCUUGUACUUGAGUACAAGAAAGAUUGAAGGAGCCCGAUCAGUGCUCAGЖCUGGAAAAGAUCAUGGAAAACUUGAAGAAUGCAGAGAUUGAACCAGAUGAUUACUPUAUGAGUCGCUAUGAGAAGAAGCUAGAAGAACUCAAAGCUAAGGAGCAGUCAGGAACCCAGAUAAGAAAGCCAPCCUAGUUUUUAUCUCAAGAUGUGUCAUACCGUCUGUAAUGAAGCAGGCAUGCCCUCUPUAGGCUAЖCAUAUUUUAGUGGCUUUGCUUUUUGCUUUUUAAAAAGUUUUUCUCUPUAAGAGAUGUGGUCUCGCCGUGUCAUCCAGGCUGGAGUGCAGUGGUGGAAUCAUAGCUCACUAUAGCCUCAAACUUCUGGGCUUAAGCAAUCCUCCUGCCUCUGCCCCCUGAGCAGCUGGGЖCUACAGGCACACACCAUCACCCUCAGCUACUAGUGGCUUUGCUPUAAAGAAACAGUGGAAUCCUAAAUUUAUGACUAAAAAUUCCCCCAAAAGAUGAAAGAUCUACA
Sequence (SHORT NAMES ENCODING) AAAAGGCCGGUACCUCGGGCAAGAUGGCUAUCAAGAGUAUCGCUUCCCGCCUCCGGGGUUCCCGUCGUUUUCUGAGCGGCUUCGUGGCUGGGGCUGUAGUGGGCGCUGCGGGAGCUGGGCUCGCGGCCCUGCAGUUCUUCCGGAGUCAGGGCGCUGAGGGAGCGUUGACAGGGAAGCAGCCGGAUGGUGAUGCAGACAGAAAGCAUUGUAAAUUUAAGCCUGAUCCCAAUAUCCCUCCAACCUUCAGUGCCUUCAAUGAAGAUUAUGUUGGAAGUGGGUGGUCACGAGGACACAUGGCUCCAGCAGGAAAUAACAAAUUUUCAAGUAAAGCCAUGGCUGAAACCUUUUACCUUUCUAACAUUGUGCCUCAGGAUUUUGAUAAUAAUUCUGGAUAUUGGAACAGAAUAGAAAUGUACUGUCGAGAGCUGACAGAAAGGUUUGAAGAUGUUUGGGUGGUAUCUGGGCCUUUGACCUUACCUCAGACUAGAGGCGAUGGAAAGAAAAUAGUUAGUUACCAGGUGAUUGGCGAGGACAACGUGGCAGUCCCCUCACACCUYUAUAAGGUAAUCCUGGCCCGCAGAAGCUCAGUAUCUACCGAACCACUGGCGCUAGGGGCCUUUGUGGUACCCAAUGAAGCCAUCGGCUUCCAGCCCCAGUUAACUGAAUUCCAAGUGAGCCUCCAGGACCUAGAGAAGUUGUCAGGm6ACUGGUGUUUUUUCCUCAUUUGGAUAGAm6ACUAGUGAUAUCCGGAAUAUCUGCUCUGUGGm6ACACCUGUAAGCUCCUGGAUUUCCAGGAGUUCACCUUGUACUUGAGUACAAGAAAGAUUGAAGGAGCCCGAUCAGUGCUCAGm6ACUGGAAAAGAUCAUGGAAAACUUGAAGAAUGCAGAGAUUGAACCAGAUGAUUACUYUAUGAGUCGCUAUGAGAAGAAGCUAGAAGAACUCAAAGCUAAGGAGCAGUCAGGAACCCAGAUAAGAAAGCCAYCCUAGUUUUUAUCUCAAGAUGUGUCAUACCGUCUGUAAUGAAGCAGGCAUGCCCUCUYUAGGCUAm6ACAUAUUUUAGUGGCUUUGCUUUUUGCUUUUUAAAAAGUUUUUCUCUYUAAGAGAUGUGGUCUCGCCGUGUCAUCCAGGCUGGAGUGCAGUGGUGGAAUCAUAGCUCACUAUAGCCUCAAACUUCUGGGCUUAAGCAAUCCUCCUGCCUCUGCCCCCUGAGCAGCUGGGm6ACUACAGGCACACACCAUCACCCUCAGCUACUAGUGGCUUUGCUYUAAAGAAACAGUGGAAUCCUAAAUUUAUGACUAAAAAUUCCCCCAAAAGAUGAAAGAUCUACA
Sequence (MODOMICS CODE ENCODING) AAAAGGCCGGUACCUCGGGCAAGAUGGCUAUCAAGAGUAUCGCUUCCCGCCUCCGGGGUUCCCGUCGUUUUCUGAGCGGCUUCGUGGCUGGGGCUGUAGUGGGCGCUGCGGGAGCUGGGCUCGCGGCCCUGCAGUUCUUCCGGAGUCAGGGCGCUGAGGGAGCGUUGACAGGGAAGCAGCCGGAUGGUGAUGCAGACAGAAAGCAUUGUAAAUUUAAGCCUGAUCCCAAUAUCCCUCCAACCUUCAGUGCCUUCAAUGAAGAUUAUGUUGGAAGUGGGUGGUCACGAGGACACAUGGCUCCAGCAGGAAAUAACAAAUUUUCAAGUAAAGCCAUGGCUGAAACCUUUUACCUUUCUAACAUUGUGCCUCAGGAUUUUGAUAAUAAUUCUGGAUAUUGGAACAGAAUAGAAAUGUACUGUCGAGAGCUGACAGAAAGGUUUGAAGAUGUUUGGGUGGUAUCUGGGCCUUUGACCUUACCUCAGACUAGAGGCGAUGGAAAGAAAAUAGUUAGUUACCAGGUGAUUGGCGAGGACAACGUGGCAGUCCCCUCACACCU2000000009UUAUAAGGUAAUCCUGGCCCGCAGAAGCUCAGUAUCUACCGAACCACUGGCGCUAGGGGCCUUUGUGGUACCCAAUGAAGCCAUCGGCUUCCAGCCCCAGUUAACUGAAUUCCAAGUGAGCCUCCAGGACCUAGAGAAGUUGUCAGG2000000006ACUGGUGUUUUUUCCUCAUUUGGAUAGA2000000006ACUAGUGAUAUCCGGAAUAUCUGCUCUGUGG2000000006ACACCUGUAAGCUCCUGGAUUUCCAGGAGUUCACCUUGUACUUGAGUACAAGAAAGAUUGAAGGAGCCCGAUCAGUGCUCAG2000000006ACUGGAAAAGAUCAUGGAAAACUUGAAGAAUGCAGAGAUUGAACCAGAUGAUUACU2000000009UUAUGAGUCGCUAUGAGAAGAAGCUAGAAGAACUCAAAGCUAAGGAGCAGUCAGGAACCCAGAUAAGAAAGCCA2000000009UCCUAGUUUUUAUCUCAAGAUGUGUCAUACCGUCUGUAAUGAAGCAGGCAUGCCCUCU2000000009UUAGGCUA2000000006ACAUAUUUUAGUGGCUUUGCUUUUUGCUUUUUAAAAAGUUUUUCUCU2000000009UUAAGAGAUGUGGUCUCGCCGUGUCAUCCAGGCUGGAGUGCAGUGGUGGAAUCAUAGCUCACUAUAGCCUCAAACUUCUGGGCUUAAGCAAUCCUCCUGCCUCUGCCCCCUGAGCAGCUGGG2000000006ACUACAGGCACACACCAUCACCCUCAGCUACUAGUGGCUUUGCU2000000009UUAAAGAAACAGUGGAAUCCUAAAUUUAUGACUAAAAAUUCCCCCAAAAGAUGAAAGAUCUACA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 557 704 732 763 845 901 975 1033 1041 1088 1210 1254
Modification Positions Y m6A m6A m6A m6A Y Y Y m6A Y m6A Y
Genomic Coordinates 3:38523939:+ 3:38524086:+ 3:38524114:+ 3:38524145:+ 3:38524227:+ 3:38524283:+ 3:38524357:+ 3:38524415:+ 3:38524423:+ 3:38524470:+ 3:38524592:+ 3:38524636:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
Yfn77uLS5tv8
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8