Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000481530
Gene ID: ENSG00000163507
Gene Name: CIP2A
Sequence (UNICHARACTER ENCODING) AAAAAAAGCGCGGCGAAAGCUAAAGGCCGGCGCACGCUGGGCGGUGGUGGUCCCUAAGCCGGGCCGCGGCCGGUGCAAUGGACUCCACUGCCUGCUUGAAGUCCUUGCUCCUGACUGUCAGUCAGUACAAAGCCGUGAAGUCAGAGGCGAACGCCACUCAGCUUUUGCGGCACUUGGAGGUAAUUUCUGGACAGAAACUCACACGACUAUUUACAUCAAAUCAGAUAUUAACAAGUGAAUGCUUGAGUUGCCUUGUAGAGCUACUUGAAGЖCCCCAACAUAAGUGCUUCACUGAUCUUAAGUAUUAUCGGUUUGCUGUCUCAACUAGCAGUAGACAUUGAAACCAGAGAUUGUCUUCAGAAUACAUAUAAUCUGAAUAGUGUGCUGGCGGGAGUGGUUUGUCGGAGCAGCCACACUGAUUCGGUGUUUUUGCAGAUGAAUUAAUUACGUUCCUGAUAGAUCACAUUCAAUCUUCUGAAGAUGAGUUAAAAAUGCCUUGUCUAGGAUUAUUGGCAAAUCUUUGUCGGCACAAUCUUUCUGUUCAAACGCACAUAAAGACAUUGAGUAAUGUGAAAUCUUUUUAUCGAACUCUUAUCACCUUGUUGGCCCAUAGUAGUUUAACUGUGGUUGUGUUUGCACUUUCAAUAUUAUCCAGUUUGACAUUAAAUGAAGAGGUGGGGGAAAAGCUAUUCCAUGCUCGAAACAUUCAUCAGACUUUUCAACUAAUAUUUAAUAUUCUCAUAAACGGUGAUGGCACUCUAACUAGAAAGUAUUCAGUUGACCUACUGAUGGAUCUCCUUAAGAAUCCUAAAAUUGCUGAUUAUCUCACCAGAUAUGAGCACUUUUCUUCAUGUCUUCACCAAGUAUUAGGUCUUCUUAAUGGAAAGGAUCCUGAUUCCUCUUCAAAGGUUUUAGAAUUACUUCUUGCCUUCUGUUCAGUGACUCAGCUGCGCCAUAUGCUCACUCAGAUGAUGUUUGAACAGUCUCCACCUGGCAGCGCCACUCUGGGAAGCCAUACUAAAUGUUUAGAACCUACUGUGGCUCUACUGCGCUGGUUAAGCCAACCUUUGGACGGAUCAGAAAACUGUUCUGUUUUAGCAUUGGAGUUGUUCAAGGAAAUAUUUGAGGAUGUCAUAGAUGCUGCUAACUGUUCCUCGGCUGAUCGUUUUGUGACCCUUCUGCUGCCUACAAUCCUUGAUCAACUUCAGUUCACAGAACAAAAUCUAGAUGAGGCUPUAЖCAAGAAAAAAAUGUGAAAGGAUUGCCAAGGCCAUUGAAGUUUUGUUAACUCUCUGUGGAGAUGAUACACUAAAAAUGCAUAUUGCAAAAAUCUUGACAACUGUCAAGUGUACCACUCUUAUAGAACAACAAUUUACAUAUGGCAAGAUUGACCUGGGAUUUGGAACAAAGGUUGCAGAUUCUGAAUUAUGCAAACUUGCUGCUGAUGUAAUUUUGAAAACUCUUGAUUUGAUUAACAAACUUAAACCAUUGGUUCCUGGUAUGGAAGUAAGCUUCUACAAAAUACUUCAGGACCCACGUUUGAUUACUCCUUUGGCUUUUGCUPUAACGUCAGAUAAUAGAGAACAAGUACAGUCUGGACUGAGAAUAUUAUUGGAGGCUGCUCCACUGCCAGAUUUUCCUGCUPUAGUЖCUUGGAGAAAGUAUAGCAGCAAACAAUGCCUAUAGACAACAGGAAACAGAACAUAUACCCAGAAAAAUGCCCUGGCAAUCAUCAAAUCACAGUUUUCCAACAUCAAUAAAGUGUUUAACUCCUCAUUUGAAAGAUGGUGUUCCUGGAUUGAAUAUUGAAGAAUUAAUAGAGAAACUUCAGUCUGGAAUGGUGGUAAAGGAUCAGAUUUGUGAUGUGAGAAUAUCUGACAUAAUGGAUGUAUAUGAAAUGAAACUAUCCACAUUAGCUUCCAAAGAAAGCAGGCUACAAGAUCUUUUGGAAACAAAAGCUCUAGCCCUUGCACAGGCUGAUAGACUGAUUGCUCAGCAUCGCUGUCAAAGAACUCAAGCUGAAACAGAGGCACGGACACUUGCUAGUAUGUUGAGAGAAGUUGAGAGAAAAAAUGAAGAGCUUAGUGUGUUGCUGAAGGCGCAGCAAGUUGAAUCAGAAAGAGCGCAGAGUGAUAUUGAGCAUCUCUUUCAACAUAAUAGGAAGUUAGAGUCUGUGGCUGAAGAACAUGAAAUACUGACAAAAUCCUACAUGGAACUUCUUCAGAGAAAUGAAAGUACUGAAAAGAAGAAUAAAGAUUUACAGAUCACAUGUGAUUCUCUGAAUAAACAAAUUGAGACAGUGAAAAAGUUGAAUGAGUCACUCAAGGAACAAAAUGAAAAAAGUAUUGCCCAAUUAAUAGAGAAAGAAGAACAGAGAAAAGAAGUACAGAAUCAGCUAGUAGACAGAGAACAUAAGCUAGCAAAUUUGCAUCAAAAAACAAAAGUACAAGAAGAAAAGAUUAAAACCUUACAAAAGGAAAGGGAAGAUAAGGAAGAAACCAUUGAUAUCCUUAGAAAAGAAUUAAGCAGAACAGAACAGAUAAGAAAAGAGUUGAGCAUUAAGGCUUCCUCCCUAGAGGUUCAAAAGGCACAAUUAGAAGGUCGUUUGGAAGAGAAAGAGUCCUUGGUGAAACUUCAGCAAGAGGAAUUGAACAAACACUCCCACAUGAUAGCAAUGAUCCACAGUUUAAGUGGUGGAAAAAUAAAUCCAGAAЖCUGUGAAUCUCAGUAUAUAGЖCAUUAUGGCAUUUUGGAAUUUGUAAUCUCAUG
Sequence (SHORT NAMES ENCODING) AAAAAAAGCGCGGCGAAAGCUAAAGGCCGGCGCACGCUGGGCGGUGGUGGUCCCUAAGCCGGGCCGCGGCCGGUGCAAUGGACUCCACUGCCUGCUUGAAGUCCUUGCUCCUGACUGUCAGUCAGUACAAAGCCGUGAAGUCAGAGGCGAACGCCACUCAGCUUUUGCGGCACUUGGAGGUAAUUUCUGGACAGAAACUCACACGACUAUUUACAUCAAAUCAGAUAUUAACAAGUGAAUGCUUGAGUUGCCUUGUAGAGCUACUUGAAGm6ACCCCAACAUAAGUGCUUCACUGAUCUUAAGUAUUAUCGGUUUGCUGUCUCAACUAGCAGUAGACAUUGAAACCAGAGAUUGUCUUCAGAAUACAUAUAAUCUGAAUAGUGUGCUGGCGGGAGUGGUUUGUCGGAGCAGCCACACUGAUUCGGUGUUUUUGCAGAUGAAUUAAUUACGUUCCUGAUAGAUCACAUUCAAUCUUCUGAAGAUGAGUUAAAAAUGCCUUGUCUAGGAUUAUUGGCAAAUCUUUGUCGGCACAAUCUUUCUGUUCAAACGCACAUAAAGACAUUGAGUAAUGUGAAAUCUUUUUAUCGAACUCUUAUCACCUUGUUGGCCCAUAGUAGUUUAACUGUGGUUGUGUUUGCACUUUCAAUAUUAUCCAGUUUGACAUUAAAUGAAGAGGUGGGGGAAAAGCUAUUCCAUGCUCGAAACAUUCAUCAGACUUUUCAACUAAUAUUUAAUAUUCUCAUAAACGGUGAUGGCACUCUAACUAGAAAGUAUUCAGUUGACCUACUGAUGGAUCUCCUUAAGAAUCCUAAAAUUGCUGAUUAUCUCACCAGAUAUGAGCACUUUUCUUCAUGUCUUCACCAAGUAUUAGGUCUUCUUAAUGGAAAGGAUCCUGAUUCCUCUUCAAAGGUUUUAGAAUUACUUCUUGCCUUCUGUUCAGUGACUCAGCUGCGCCAUAUGCUCACUCAGAUGAUGUUUGAACAGUCUCCACCUGGCAGCGCCACUCUGGGAAGCCAUACUAAAUGUUUAGAACCUACUGUGGCUCUACUGCGCUGGUUAAGCCAACCUUUGGACGGAUCAGAAAACUGUUCUGUUUUAGCAUUGGAGUUGUUCAAGGAAAUAUUUGAGGAUGUCAUAGAUGCUGCUAACUGUUCCUCGGCUGAUCGUUUUGUGACCCUUCUGCUGCCUACAAUCCUUGAUCAACUUCAGUUCACAGAACAAAAUCUAGAUGAGGCUYUAm6ACAAGAAAAAAAUGUGAAAGGAUUGCCAAGGCCAUUGAAGUUUUGUUAACUCUCUGUGGAGAUGAUACACUAAAAAUGCAUAUUGCAAAAAUCUUGACAACUGUCAAGUGUACCACUCUUAUAGAACAACAAUUUACAUAUGGCAAGAUUGACCUGGGAUUUGGAACAAAGGUUGCAGAUUCUGAAUUAUGCAAACUUGCUGCUGAUGUAAUUUUGAAAACUCUUGAUUUGAUUAACAAACUUAAACCAUUGGUUCCUGGUAUGGAAGUAAGCUUCUACAAAAUACUUCAGGACCCACGUUUGAUUACUCCUUUGGCUUUUGCUYUAACGUCAGAUAAUAGAGAACAAGUACAGUCUGGACUGAGAAUAUUAUUGGAGGCUGCUCCACUGCCAGAUUUUCCUGCUYUAGUm6ACUUGGAGAAAGUAUAGCAGCAAACAAUGCCUAUAGACAACAGGAAACAGAACAUAUACCCAGAAAAAUGCCCUGGCAAUCAUCAAAUCACAGUUUUCCAACAUCAAUAAAGUGUUUAACUCCUCAUUUGAAAGAUGGUGUUCCUGGAUUGAAUAUUGAAGAAUUAAUAGAGAAACUUCAGUCUGGAAUGGUGGUAAAGGAUCAGAUUUGUGAUGUGAGAAUAUCUGACAUAAUGGAUGUAUAUGAAAUGAAACUAUCCACAUUAGCUUCCAAAGAAAGCAGGCUACAAGAUCUUUUGGAAACAAAAGCUCUAGCCCUUGCACAGGCUGAUAGACUGAUUGCUCAGCAUCGCUGUCAAAGAACUCAAGCUGAAACAGAGGCACGGACACUUGCUAGUAUGUUGAGAGAAGUUGAGAGAAAAAAUGAAGAGCUUAGUGUGUUGCUGAAGGCGCAGCAAGUUGAAUCAGAAAGAGCGCAGAGUGAUAUUGAGCAUCUCUUUCAACAUAAUAGGAAGUUAGAGUCUGUGGCUGAAGAACAUGAAAUACUGACAAAAUCCUACAUGGAACUUCUUCAGAGAAAUGAAAGUACUGAAAAGAAGAAUAAAGAUUUACAGAUCACAUGUGAUUCUCUGAAUAAACAAAUUGAGACAGUGAAAAAGUUGAAUGAGUCACUCAAGGAACAAAAUGAAAAAAGUAUUGCCCAAUUAAUAGAGAAAGAAGAACAGAGAAAAGAAGUACAGAAUCAGCUAGUAGACAGAGAACAUAAGCUAGCAAAUUUGCAUCAAAAAACAAAAGUACAAGAAGAAAAGAUUAAAACCUUACAAAAGGAAAGGGAAGAUAAGGAAGAAACCAUUGAUAUCCUUAGAAAAGAAUUAAGCAGAACAGAACAGAUAAGAAAAGAGUUGAGCAUUAAGGCUUCCUCCCUAGAGGUUCAAAAGGCACAAUUAGAAGGUCGUUUGGAAGAGAAAGAGUCCUUGGUGAAACUUCAGCAAGAGGAAUUGAACAAACACUCCCACAUGAUAGCAAUGAUCCACAGUUUAAGUGGUGGAAAAAUAAAUCCAGAAm6ACUGUGAAUCUCAGUAUAUAGm6ACAUUAUGGCAUUUUGGAAUUUGUAAUCUCAUG
Sequence (MODOMICS CODE ENCODING) AAAAAAAGCGCGGCGAAAGCUAAAGGCCGGCGCACGCUGGGCGGUGGUGGUCCCUAAGCCGGGCCGCGGCCGGUGCAAUGGACUCCACUGCCUGCUUGAAGUCCUUGCUCCUGACUGUCAGUCAGUACAAAGCCGUGAAGUCAGAGGCGAACGCCACUCAGCUUUUGCGGCACUUGGAGGUAAUUUCUGGACAGAAACUCACACGACUAUUUACAUCAAAUCAGAUAUUAACAAGUGAAUGCUUGAGUUGCCUUGUAGAGCUACUUGAAG2000000006ACCCCAACAUAAGUGCUUCACUGAUCUUAAGUAUUAUCGGUUUGCUGUCUCAACUAGCAGUAGACAUUGAAACCAGAGAUUGUCUUCAGAAUACAUAUAAUCUGAAUAGUGUGCUGGCGGGAGUGGUUUGUCGGAGCAGCCACACUGAUUCGGUGUUUUUGCAGAUGAAUUAAUUACGUUCCUGAUAGAUCACAUUCAAUCUUCUGAAGAUGAGUUAAAAAUGCCUUGUCUAGGAUUAUUGGCAAAUCUUUGUCGGCACAAUCUUUCUGUUCAAACGCACAUAAAGACAUUGAGUAAUGUGAAAUCUUUUUAUCGAACUCUUAUCACCUUGUUGGCCCAUAGUAGUUUAACUGUGGUUGUGUUUGCACUUUCAAUAUUAUCCAGUUUGACAUUAAAUGAAGAGGUGGGGGAAAAGCUAUUCCAUGCUCGAAACAUUCAUCAGACUUUUCAACUAAUAUUUAAUAUUCUCAUAAACGGUGAUGGCACUCUAACUAGAAAGUAUUCAGUUGACCUACUGAUGGAUCUCCUUAAGAAUCCUAAAAUUGCUGAUUAUCUCACCAGAUAUGAGCACUUUUCUUCAUGUCUUCACCAAGUAUUAGGUCUUCUUAAUGGAAAGGAUCCUGAUUCCUCUUCAAAGGUUUUAGAAUUACUUCUUGCCUUCUGUUCAGUGACUCAGCUGCGCCAUAUGCUCACUCAGAUGAUGUUUGAACAGUCUCCACCUGGCAGCGCCACUCUGGGAAGCCAUACUAAAUGUUUAGAACCUACUGUGGCUCUACUGCGCUGGUUAAGCCAACCUUUGGACGGAUCAGAAAACUGUUCUGUUUUAGCAUUGGAGUUGUUCAAGGAAAUAUUUGAGGAUGUCAUAGAUGCUGCUAACUGUUCCUCGGCUGAUCGUUUUGUGACCCUUCUGCUGCCUACAAUCCUUGAUCAACUUCAGUUCACAGAACAAAAUCUAGAUGAGGCU2000000009UUA2000000006ACAAGAAAAAAAUGUGAAAGGAUUGCCAAGGCCAUUGAAGUUUUGUUAACUCUCUGUGGAGAUGAUACACUAAAAAUGCAUAUUGCAAAAAUCUUGACAACUGUCAAGUGUACCACUCUUAUAGAACAACAAUUUACAUAUGGCAAGAUUGACCUGGGAUUUGGAACAAAGGUUGCAGAUUCUGAAUUAUGCAAACUUGCUGCUGAUGUAAUUUUGAAAACUCUUGAUUUGAUUAACAAACUUAAACCAUUGGUUCCUGGUAUGGAAGUAAGCUUCUACAAAAUACUUCAGGACCCACGUUUGAUUACUCCUUUGGCUUUUGCU2000000009UUAACGUCAGAUAAUAGAGAACAAGUACAGUCUGGACUGAGAAUAUUAUUGGAGGCUGCUCCACUGCCAGAUUUUCCUGCU2000000009UUAGU2000000006ACUUGGAGAAAGUAUAGCAGCAAACAAUGCCUAUAGACAACAGGAAACAGAACAUAUACCCAGAAAAAUGCCCUGGCAAUCAUCAAAUCACAGUUUUCCAACAUCAAUAAAGUGUUUAACUCCUCAUUUGAAAGAUGGUGUUCCUGGAUUGAAUAUUGAAGAAUUAAUAGAGAAACUUCAGUCUGGAAUGGUGGUAAAGGAUCAGAUUUGUGAUGUGAGAAUAUCUGACAUAAUGGAUGUAUAUGAAAUGAAACUAUCCACAUUAGCUUCCAAAGAAAGCAGGCUACAAGAUCUUUUGGAAACAAAAGCUCUAGCCCUUGCACAGGCUGAUAGACUGAUUGCUCAGCAUCGCUGUCAAAGAACUCAAGCUGAAACAGAGGCACGGACACUUGCUAGUAUGUUGAGAGAAGUUGAGAGAAAAAAUGAAGAGCUUAGUGUGUUGCUGAAGGCGCAGCAAGUUGAAUCAGAAAGAGCGCAGAGUGAUAUUGAGCAUCUCUUUCAACAUAAUAGGAAGUUAGAGUCUGUGGCUGAAGAACAUGAAAUACUGACAAAAUCCUACAUGGAACUUCUUCAGAGAAAUGAAAGUACUGAAAAGAAGAAUAAAGAUUUACAGAUCACAUGUGAUUCUCUGAAUAAACAAAUUGAGACAGUGAAAAAGUUGAAUGAGUCACUCAAGGAACAAAAUGAAAAAAGUAUUGCCCAAUUAAUAGAGAAAGAAGAACAGAGAAAAGAAGUACAGAAUCAGCUAGUAGACAGAGAACAUAAGCUAGCAAAUUUGCAUCAAAAAACAAAAGUACAAGAAGAAAAGAUUAAAACCUUACAAAAGGAAAGGGAAGAUAAGGAAGAAACCAUUGAUAUCCUUAGAAAAGAAUUAAGCAGAACAGAACAGAUAAGAAAAGAGUUGAGCAUUAAGGCUUCCUCCCUAGAGGUUCAAAAGGCACAAUUAGAAGGUCGUUUGGAAGAGAAAGAGUCCUUGGUGAAACUUCAGCAAGAGGAAUUGAACAAACACUCCCACAUGAUAGCAAUGAUCCACAGUUUAAGUGGUGGAAAAAUAAAUCCAGAA2000000006ACUGUGAAUCUCAGUAUAUAG2000000006ACAUUAUGGCAUUUUGGAAUUUGUAAUCUCAUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 271 1235 1238 1562 1643 1648 2711 2732
Modification Positions m6A Y m6A Y Y m6A m6A m6A
Genomic Coordinates 3:108585121:- 3:108568206:- 3:108568203:- 3:108563211:- 3:108563130:- 3:108560841:- 3:108551169:- 3:108551148:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs WiQcrNTGZHPT
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
93arJtwJmuS9
BkoLW2CBToyL
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP