Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000523321
Gene ID: ENSG00000164941
Gene Name: INTS8
Sequence (UNICHARACTER ENCODING) UUUCCGGGACGUUCGGAGGGUGGCCUCUCUCCCACCGGGUUCCGCAUACCCCAGGCACCGGCCCGCAUCCAAGUGUCAGGUUGGAGCCGGGAAGCGGCCCUGGUGGUAGCGGCGGCGGGGGCAGGAUGAGCGCGGAGGCGGCGGACCGGGAGGCGGCCACCUCCAGCCGGCCCUGCACCCCGCCGCAGACCUGCUGGUUUGAGUUUCUGCUGGAGGAGUCACUGUUGGAGAAACAUCUGCGCAAGCCCUGCCCGGAUCCUGCACCAGUUCAACUUAUAGUUCAGUUUUUGGAACAGGCUUCCAAACCUUCAGUUAAUGAACAAAACCAAGUUCAACCUCCGCCUGAUAACAAGAGAAAUCGUAUUUUAAAACUACUUGCUCUUAAAGUUGCUGCACAUUUGAAGUGGGACUUAGACAUAUUAGAGAAAAGUUUGUCUGUUCCAGUAUUGAAUAUGCUACUAAAUGAACUACUCUGCAUCAGUAAAGUUCCUCCUGGGACAAAGCAUGUAGACAUGGAUCUGGCCACUUUACCUCCGACCACUGCCAUGGCUGUACUUCUCUAUAAUAGAUGGGCAAUUAGGACAAUUGUUCAAAGUAGUUUUCCAGUCAAACAGGCAAAACCCGGACCCCCUCAGUUAAGUGUUAUGAAUCAAAUGCAACAGGAAAAAGAGCUAЖCAGAAAACAUUUUGAAAGUGCUCAAAGAACAAGCUGCUGAUUCUAUUUUGGUACUAGAAGCAGCCCUAAAAUUAAЖCAAGGAUCUPUAUGUCCAUACGAUGAGAACUCUAGAUUUAUUGGCCAUGGAACCAGGCAUGGUAAAUGGAGAAACUGAGAGUUCUACUGCUGGAUUGAAAGUCAAAACCGAAGAAAUGCAGUGCCAGGUGUGCUAUGAUUUGGGCGCAGCAUACUUCCAGCAAGGCUCCACAAAUUCAGCUGUCUAUGAAAAUGCCAGGGAAAAAUUUUUUAGAACCAAAGAACUAAUUGCAGAGAUAGGUUCAUUAUCUCUUCAUUGUACCAUAGAUGAGAAGCGGUUAGCUGGCUAUUGUCAAGCAUGUGAUGUUCUUGUACCUUCUUCUGAUAGUACAUCUCAACAGUUGACUCCAUAUAGUCAAGUCCAUAUUUGUUUGAGAUCUGGCAACUAUCAGGAGGUAAUACAGAUUUUCAUUGAAGACAACUUAACCUUGAGUUUACCUGUCCAGUUCCGACAGUCAGUCCUAAGAGAACUCUPUAAGAAAGCUCAACAGGGAAAUGAAGCUCUAGAUGAAAUCUGUUUUAAAGUUUGUGCCUGUAAUACAGUCCGUGAUAUACUGGAAGGCAGAACAAUUAGUGUUCAAUUUAACCAGCUAUUUCUUAGACCAAAUAAAGAGAAAAUAGACUUUCUUCUUGAGGUAUGUUCAAGAUCAGUAAAUUUAGAAAAAGCUUCAGAGUCUUUGAAAGGAAACAUGGCUGCUUUUCUAAAGAAUGUGUGUCUGGGGUUGGAAGAUCUGCAGUAUGUUUUCAUGAUUUCUUCACAUGAGCUUUUCAUUACAUUGUUGAAAGAUGAAGAACGAAAGCUACUUGUUGAUCAGAUGAGGAAGAGAUCCCCUAGAGUAAAUCUGUGCAUUAAACCUGUAЖCUUCAUUUUAUGAUAUCCCAGCUUCAGCAAGUGUCAACAUUGGUCAGUUAGAGCAUCAACUUAUAUUGUCAGUGGAUCCUUGGAGGAUUAGACAAAUUUUAAUUGAAUUACAUGGUAUGACUUCAGAGCGCCAGUUCUGGACAGUGUCUAAUAAGUGGGAAGUACCUUCUGUCUAUAGUGGUGUUAUCCUGGGAAUUAAAGЖCAAUUUAЖCAAGAGAUUUGGUUUAUAUUCUUAUGGCCAAAGGUUUGCACUGCAGUACUGUUAAGGACUUUUCCCAUGCUAAЖCAGCUCUUUGCUGCUUGUUUGGAGUUGGUAACAGAGUUCUCACCGAAGCUUCGUCAGGUCAUGCUGAAUGAGAUGUUGCUUUUGGAUAUUCAUACACACGAAGCUGGGACAGGGCAGGCAGGAGAGAGACCGCCAPCCGACCUUAUAAGUAGAGUACGAGGCUAUCUGGAAAUGAGGCUUCCUGAUAUUCCUCUUCGUCAAGUUAUAGCUGAGGAAUGUGUUGCCUPUAUGUUAAACUGGAGAGAAAAUGAAUACCUUACACUCCAAGUUCCUGCAUUUUUGCUUCAGAGUAAUCCAUAUGUAAAGGUAGUUAAUGUUUAAAUAAAAGGAUUGUUAGGAUGGUAUUAUUAUACUUGUUUCUUUAACUUUAUACUACUUUGGGAACUUGUCUAAUUUCUGUGAUACAAAUGAUUGGACAAAUGCUUGUUGAUUUGUAGUUAAAGGAUAGAGUUUUUGAUAAUUCAUGCACUUGACCUUGUUCUAAUAUUUCUUUCUAAUGCCCUGUAAUUCAUGAGCAUGUAGUCACAGAUUAUUUAGUUAACAGAUAACACAUUGGUGUAAUCCUAAGUAAUGAGAGAUUCGCUUUCUUUGCUUUGGUUGCUCUAAUCACACUCUAGAACUGAUGGAGUCCGUCAGGGAUGCACUUCUCCUUGUUUCCAUUUGAACACUUUAUUCUUCUUUAGAAUUUUAUCCUUCUAAGUUUGCUAUGUCUGAAUCUCCAAUAGGUUUGCUAUUAGUAAUUAUUCCCCUAGUGAAAGAAUUUAUUCAGUAAAUUGGCACUAAGUUAUUUUGUUGUCUUAAUUAUAUCCUUUGCAACCUAAAAUGCUUCUGAGUACAGAAAAUAUCAAAACUAAUAAGAAACUGGAGGUUUUUUCUAAGAUUAUAUCUUUCAUGUGUUAAUAUUAUACACACUCUGAGUAAGUAGUGGGUUUUUCUCACUUUCUGGUUUUACAGUUAAAAAAAAAACAAAGUAGGCUGGGCGUGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCC
Sequence (SHORT NAMES ENCODING) UUUCCGGGACGUUCGGAGGGUGGCCUCUCUCCCACCGGGUUCCGCAUACCCCAGGCACCGGCCCGCAUCCAAGUGUCAGGUUGGAGCCGGGAAGCGGCCCUGGUGGUAGCGGCGGCGGGGGCAGGAUGAGCGCGGAGGCGGCGGACCGGGAGGCGGCCACCUCCAGCCGGCCCUGCACCCCGCCGCAGACCUGCUGGUUUGAGUUUCUGCUGGAGGAGUCACUGUUGGAGAAACAUCUGCGCAAGCCCUGCCCGGAUCCUGCACCAGUUCAACUUAUAGUUCAGUUUUUGGAACAGGCUUCCAAACCUUCAGUUAAUGAACAAAACCAAGUUCAACCUCCGCCUGAUAACAAGAGAAAUCGUAUUUUAAAACUACUUGCUCUUAAAGUUGCUGCACAUUUGAAGUGGGACUUAGACAUAUUAGAGAAAAGUUUGUCUGUUCCAGUAUUGAAUAUGCUACUAAAUGAACUACUCUGCAUCAGUAAAGUUCCUCCUGGGACAAAGCAUGUAGACAUGGAUCUGGCCACUUUACCUCCGACCACUGCCAUGGCUGUACUUCUCUAUAAUAGAUGGGCAAUUAGGACAAUUGUUCAAAGUAGUUUUCCAGUCAAACAGGCAAAACCCGGACCCCCUCAGUUAAGUGUUAUGAAUCAAAUGCAACAGGAAAAAGAGCUAm6ACAGAAAACAUUUUGAAAGUGCUCAAAGAACAAGCUGCUGAUUCUAUUUUGGUACUAGAAGCAGCCCUAAAAUUAAm6ACAAGGAUCUYUAUGUCCAUACGAUGAGAACUCUAGAUUUAUUGGCCAUGGAACCAGGCAUGGUAAAUGGAGAAACUGAGAGUUCUACUGCUGGAUUGAAAGUCAAAACCGAAGAAAUGCAGUGCCAGGUGUGCUAUGAUUUGGGCGCAGCAUACUUCCAGCAAGGCUCCACAAAUUCAGCUGUCUAUGAAAAUGCCAGGGAAAAAUUUUUUAGAACCAAAGAACUAAUUGCAGAGAUAGGUUCAUUAUCUCUUCAUUGUACCAUAGAUGAGAAGCGGUUAGCUGGCUAUUGUCAAGCAUGUGAUGUUCUUGUACCUUCUUCUGAUAGUACAUCUCAACAGUUGACUCCAUAUAGUCAAGUCCAUAUUUGUUUGAGAUCUGGCAACUAUCAGGAGGUAAUACAGAUUUUCAUUGAAGACAACUUAACCUUGAGUUUACCUGUCCAGUUCCGACAGUCAGUCCUAAGAGAACUCUYUAAGAAAGCUCAACAGGGAAAUGAAGCUCUAGAUGAAAUCUGUUUUAAAGUUUGUGCCUGUAAUACAGUCCGUGAUAUACUGGAAGGCAGAACAAUUAGUGUUCAAUUUAACCAGCUAUUUCUUAGACCAAAUAAAGAGAAAAUAGACUUUCUUCUUGAGGUAUGUUCAAGAUCAGUAAAUUUAGAAAAAGCUUCAGAGUCUUUGAAAGGAAACAUGGCUGCUUUUCUAAAGAAUGUGUGUCUGGGGUUGGAAGAUCUGCAGUAUGUUUUCAUGAUUUCUUCACAUGAGCUUUUCAUUACAUUGUUGAAAGAUGAAGAACGAAAGCUACUUGUUGAUCAGAUGAGGAAGAGAUCCCCUAGAGUAAAUCUGUGCAUUAAACCUGUAm6ACUUCAUUUUAUGAUAUCCCAGCUUCAGCAAGUGUCAACAUUGGUCAGUUAGAGCAUCAACUUAUAUUGUCAGUGGAUCCUUGGAGGAUUAGACAAAUUUUAAUUGAAUUACAUGGUAUGACUUCAGAGCGCCAGUUCUGGACAGUGUCUAAUAAGUGGGAAGUACCUUCUGUCUAUAGUGGUGUUAUCCUGGGAAUUAAAGm6ACAAUUUAm6ACAAGAGAUUUGGUUUAUAUUCUUAUGGCCAAAGGUUUGCACUGCAGUACUGUUAAGGACUUUUCCCAUGCUAAm6ACAGCUCUUUGCUGCUUGUUUGGAGUUGGUAACAGAGUUCUCACCGAAGCUUCGUCAGGUCAUGCUGAAUGAGAUGUUGCUUUUGGAUAUUCAUACACACGAAGCUGGGACAGGGCAGGCAGGAGAGAGACCGCCAYCCGACCUUAUAAGUAGAGUACGAGGCUAUCUGGAAAUGAGGCUUCCUGAUAUUCCUCUUCGUCAAGUUAUAGCUGAGGAAUGUGUUGCCUYUAUGUUAAACUGGAGAGAAAAUGAAUACCUUACACUCCAAGUUCCUGCAUUUUUGCUUCAGAGUAAUCCAUAUGUAAAGGUAGUUAAUGUUUAAAUAAAAGGAUUGUUAGGAUGGUAUUAUUAUACUUGUUUCUUUAACUUUAUACUACUUUGGGAACUUGUCUAAUUUCUGUGAUACAAAUGAUUGGACAAAUGCUUGUUGAUUUGUAGUUAAAGGAUAGAGUUUUUGAUAAUUCAUGCACUUGACCUUGUUCUAAUAUUUCUUUCUAAUGCCCUGUAAUUCAUGAGCAUGUAGUCACAGAUUAUUUAGUUAACAGAUAACACAUUGGUGUAAUCCUAAGUAAUGAGAGAUUCGCUUUCUUUGCUUUGGUUGCUCUAAUCACACUCUAGAACUGAUGGAGUCCGUCAGGGAUGCACUUCUCCUUGUUUCCAUUUGAACACUUUAUUCUUCUUUAGAAUUUUAUCCUUCUAAGUUUGCUAUGUCUGAAUCUCCAAUAGGUUUGCUAUUAGUAAUUAUUCCCCUAGUGAAAGAAUUUAUUCAGUAAAUUGGCACUAAGUUAUUUUGUUGUCUUAAUUAUAUCCUUUGCAACCUAAAAUGCUUCUGAGUACAGAAAAUAUCAAAACUAAUAAGAAACUGGAGGUUUUUUCUAAGAUUAUAUCUUUCAUGUGUUAAUAUUAUACACACUCUGAGUAAGUAGUGGGUUUUUCUCACUUUCUGGUUUUACAGUUAAAAAAAAAACAAAGUAGGCUGGGCGUGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCC
Sequence (MODOMICS CODE ENCODING) UUUCCGGGACGUUCGGAGGGUGGCCUCUCUCCCACCGGGUUCCGCAUACCCCAGGCACCGGCCCGCAUCCAAGUGUCAGGUUGGAGCCGGGAAGCGGCCCUGGUGGUAGCGGCGGCGGGGGCAGGAUGAGCGCGGAGGCGGCGGACCGGGAGGCGGCCACCUCCAGCCGGCCCUGCACCCCGCCGCAGACCUGCUGGUUUGAGUUUCUGCUGGAGGAGUCACUGUUGGAGAAACAUCUGCGCAAGCCCUGCCCGGAUCCUGCACCAGUUCAACUUAUAGUUCAGUUUUUGGAACAGGCUUCCAAACCUUCAGUUAAUGAACAAAACCAAGUUCAACCUCCGCCUGAUAACAAGAGAAAUCGUAUUUUAAAACUACUUGCUCUUAAAGUUGCUGCACAUUUGAAGUGGGACUUAGACAUAUUAGAGAAAAGUUUGUCUGUUCCAGUAUUGAAUAUGCUACUAAAUGAACUACUCUGCAUCAGUAAAGUUCCUCCUGGGACAAAGCAUGUAGACAUGGAUCUGGCCACUUUACCUCCGACCACUGCCAUGGCUGUACUUCUCUAUAAUAGAUGGGCAAUUAGGACAAUUGUUCAAAGUAGUUUUCCAGUCAAACAGGCAAAACCCGGACCCCCUCAGUUAAGUGUUAUGAAUCAAAUGCAACAGGAAAAAGAGCUA2000000006ACAGAAAACAUUUUGAAAGUGCUCAAAGAACAAGCUGCUGAUUCUAUUUUGGUACUAGAAGCAGCCCUAAAAUUAA2000000006ACAAGGAUCU2000000009UUAUGUCCAUACGAUGAGAACUCUAGAUUUAUUGGCCAUGGAACCAGGCAUGGUAAAUGGAGAAACUGAGAGUUCUACUGCUGGAUUGAAAGUCAAAACCGAAGAAAUGCAGUGCCAGGUGUGCUAUGAUUUGGGCGCAGCAUACUUCCAGCAAGGCUCCACAAAUUCAGCUGUCUAUGAAAAUGCCAGGGAAAAAUUUUUUAGAACCAAAGAACUAAUUGCAGAGAUAGGUUCAUUAUCUCUUCAUUGUACCAUAGAUGAGAAGCGGUUAGCUGGCUAUUGUCAAGCAUGUGAUGUUCUUGUACCUUCUUCUGAUAGUACAUCUCAACAGUUGACUCCAUAUAGUCAAGUCCAUAUUUGUUUGAGAUCUGGCAACUAUCAGGAGGUAAUACAGAUUUUCAUUGAAGACAACUUAACCUUGAGUUUACCUGUCCAGUUCCGACAGUCAGUCCUAAGAGAACUCU2000000009UUAAGAAAGCUCAACAGGGAAAUGAAGCUCUAGAUGAAAUCUGUUUUAAAGUUUGUGCCUGUAAUACAGUCCGUGAUAUACUGGAAGGCAGAACAAUUAGUGUUCAAUUUAACCAGCUAUUUCUUAGACCAAAUAAAGAGAAAAUAGACUUUCUUCUUGAGGUAUGUUCAAGAUCAGUAAAUUUAGAAAAAGCUUCAGAGUCUUUGAAAGGAAACAUGGCUGCUUUUCUAAAGAAUGUGUGUCUGGGGUUGGAAGAUCUGCAGUAUGUUUUCAUGAUUUCUUCACAUGAGCUUUUCAUUACAUUGUUGAAAGAUGAAGAACGAAAGCUACUUGUUGAUCAGAUGAGGAAGAGAUCCCCUAGAGUAAAUCUGUGCAUUAAACCUGUA2000000006ACUUCAUUUUAUGAUAUCCCAGCUUCAGCAAGUGUCAACAUUGGUCAGUUAGAGCAUCAACUUAUAUUGUCAGUGGAUCCUUGGAGGAUUAGACAAAUUUUAAUUGAAUUACAUGGUAUGACUUCAGAGCGCCAGUUCUGGACAGUGUCUAAUAAGUGGGAAGUACCUUCUGUCUAUAGUGGUGUUAUCCUGGGAAUUAAAG2000000006ACAAUUUA2000000006ACAAGAGAUUUGGUUUAUAUUCUUAUGGCCAAAGGUUUGCACUGCAGUACUGUUAAGGACUUUUCCCAUGCUAA2000000006ACAGCUCUUUGCUGCUUGUUUGGAGUUGGUAACAGAGUUCUCACCGAAGCUUCGUCAGGUCAUGCUGAAUGAGAUGUUGCUUUUGGAUAUUCAUACACACGAAGCUGGGACAGGGCAGGCAGGAGAGAGACCGCCA2000000009UCCGACCUUAUAAGUAGAGUACGAGGCUAUCUGGAAAUGAGGCUUCCUGAUAUUCCUCUUCGUCAAGUUAUAGCUGAGGAAUGUGUUGCCU2000000009UUAUGUUAAACUGGAGAGAAAAUGAAUACCUUACACUCCAAGUUCCUGCAUUUUUGCUUCAGAGUAAUCCAUAUGUAAAGGUAGUUAAUGUUUAAAUAAAAGGAUUGUUAGGAUGGUAUUAUUAUACUUGUUUCUUUAACUUUAUACUACUUUGGGAACUUGUCUAAUUUCUGUGAUACAAAUGAUUGGACAAAUGCUUGUUGAUUUGUAGUUAAAGGAUAGAGUUUUUGAUAAUUCAUGCACUUGACCUUGUUCUAAUAUUUCUUUCUAAUGCCCUGUAAUUCAUGAGCAUGUAGUCACAGAUUAUUUAGUUAACAGAUAACACAUUGGUGUAAUCCUAAGUAAUGAGAGAUUCGCUUUCUUUGCUUUGGUUGCUCUAAUCACACUCUAGAACUGAUGGAGUCCGUCAGGGAUGCACUUCUCCUUGUUUCCAUUUGAACACUUUAUUCUUCUUUAGAAUUUUAUCCUUCUAAGUUUGCUAUGUCUGAAUCUCCAAUAGGUUUGCUAUUAGUAAUUAUUCCCCUAGUGAAAGAAUUUAUUCAGUAAAUUGGCACUAAGUUAUUUUGUUGUCUUAAUUAUAUCCUUUGCAACCUAAAAUGCUUCUGAGUACAGAAAAUAUCAAAACUAAUAAGAAACUGGAGGUUUUUUCUAAGAUUAUAUCUUUCAUGUGUUAAUAUUAUACACACUCUGAGUAAGUAGUGGGUUUUUCUCACUUUCUGGUUUUACAGUUAAAAAAAAAACAAAGUAGGCUGGGCGUGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 675 751 761 1225 1611 1813 1821 1895 2031 2122
Modification Positions m6A m6A Y Y m6A m6A m6A m6A Y Y
Genomic Coordinates 8:94829006:+ 8:94832047:+ 8:94832057:+ 8:94841573:+ 8:94850070:+ 8:94853851:+ 8:94853859:+ 8:94856794:+ 8:94856930:+ 8:94859553:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8