Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000641825
Gene ID: ENSG00000254166
Gene Name: CASC19
Sequence (UNICHARACTER ENCODING) UUAUUAAUGGCUCUCCUACUAGGAGCCUGACAUCAUGGUGAGCAUCGAGAAAGGAAUAACCUAAGCUGAAGACACGCCUUUUCAGGAGGCCAAGUUCCACGUUCUGUGCAUGCUUUUGGCGAAAGUCAGCAUAUCUGAAGGCCCUGACUCAACAGUAGUGGGUCUUAAUGCUUGUGCUUGUCCACCCUUCUCGGCAGUGAUUGAUUUCAUUGUUGGCUUGUUUUCAUGACUUGAAUGUGCGAUCUUCAGAGGGCCUAAUUCCUUGCAAGUUCCAUUUGAGGGUGGAAGAGCUAGAACAAGCUAUAACCAGUAGACAACUCCGUGACUCAGGAGCUUAAGCAUGUGЖCUAAUUAGUA
Sequence (SHORT NAMES ENCODING) UUAUUAAUGGCUCUCCUACUAGGAGCCUGACAUCAUGGUGAGCAUCGAGAAAGGAAUAACCUAAGCUGAAGACACGCCUUUUCAGGAGGCCAAGUUCCACGUUCUGUGCAUGCUUUUGGCGAAAGUCAGCAUAUCUGAAGGCCCUGACUCAACAGUAGUGGGUCUUAAUGCUUGUGCUUGUCCACCCUUCUCGGCAGUGAUUGAUUUCAUUGUUGGCUUGUUUUCAUGACUUGAAUGUGCGAUCUUCAGAGGGCCUAAUUCCUUGCAAGUUCCAUUUGAGGGUGGAAGAGCUAGAACAAGCUAUAACCAGUAGACAACUCCGUGACUCAGGAGCUUAAGCAUGUGm6ACUAAUUAGUA
Sequence (MODOMICS CODE ENCODING) UUAUUAAUGGCUCUCCUACUAGGAGCCUGACAUCAUGGUGAGCAUCGAGAAAGGAAUAACCUAAGCUGAAGACACGCCUUUUCAGGAGGCCAAGUUCCACGUUCUGUGCAUGCUUUUGGCGAAAGUCAGCAUAUCUGAAGGCCCUGACUCAACAGUAGUGGGUCUUAAUGCUUGUGCUUGUCCACCCUUCUCGGCAGUGAUUGAUUUCAUUGUUGGCUUGUUUUCAUGACUUGAAUGUGCGAUCUUCAGAGGGCCUAAUUCCUUGCAAGUUCCAUUUGAGGGUGGAAGAGCUAGAACAAGCUAUAACCAGUAGACAACUCCGUGACUCAGGAGCUUAAGCAUGUG2000000006ACUAAUUAGUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 346
Modification Positions m6A
Genomic Coordinates 8:127223018:-
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs 6UuHp6YApVKv
jNkxUQNx8GRd
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
dknfVe6BK8aP