General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000666776
Gene ID:	ENSG00000249859
Gene Name:	PVT1
Sequence (UNICHARACTER ENCODING)	UGGUCAUAGCGAAUCUUUCUAAAGCUCUGAUCAGUCAAGAAGGGGGUUGUAUCAAUCCUCAGAACCCUGAGUGGAACUUUCUACAGGAUUUAUUAGGAGAAAAACCUUCCCGGAAGCUGCAGAAGGACAAAUACAGAAUCCGUGUCUGGGAGAAACCUCGUGGCCUGGUCUCCAUUAUUUGAGAUGAGUUACAUCUUGGAGGUGAGGACGUGCCUCGUGGUCUAAAGCUUCGGCACAAGGGCCCAACUGGAAUUCCACUUACGGGCCUGAUCUUUUGGCCAGAAGGAGAUUAAAAAGAUGCCCCUCAAGAUGGCUGUGCCUGUCAGCUGCAUGGAGCUUCGUUCAAGUAUUUUCUGAGCCUGAUGGAUUUACAGUGAUCUUCAGUGGUCUGGGGAAUAACGCUGGUGGAACCAUGCACUGGAAUGACACACGCCCGGCACAUUUCAGGAUACUAAAAGUGGUUUUAAGGGAGGCUGUGGCUGAAUGCCUCAUGGЖUUCUUACAGCUUGGAUGUCCAUGGGGGACGAAGGЖCUGCAGCUGGCUGAGAGGGUUGAGAUCUCUGUUUACUUAGAUCUCUGCCAACUUCCUUUGGGUCUCCCUAUGGAAUGUAAGACCCCGACUCUUCCUGGUGAAGCAUCUGAUGCACGUUCCAPCCGGCGCUCAGCUGGGCUUGAGCUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGCACAUACAGCCAUCAUGAUGGUACUUUAAGUGGAGGCUGAAUCAUCUCCCCUUUGAGCUGCUUGGCACGUGGCUCCCUUGGUGUUCCCCUUUUACUGCCAGGACACUGAGAUUUGGAGAGAAUCCUGUUACACCUGGGAUUUAGGCACUUUCAAUCUGAAAAAAUACAUAUCCUUUCAGCACUCUGGACGGACUUGAGAACUGUCCUUACGUGACCUAAAGCUGGAGUAUUUUGAGAUUGGAGAAUUAAGGACAGAAUAACGGGCUCCCAGAUUCACAAGCCCCACCAAGAGGAUCACCCCAGGAACGCUUGGAGGCUGAGGAGUUCACUGAGGCUACUGCAUCUUGAGACUCAGGAUGAAGЖCCCAGCUUGGGGCUGUCAAAGAGGCCUGAAGAGGCAGAACACCCCAGAGGAGCCUGGGGCCACCACCCAGCAUCACUGUGGGAAAACGGCAGCAGGAAAUGUCCUCUCGCCUGCGUGCUCCACCUCGGUCCACGCCUUCCCUCCUUCUGGAAGCCUUGCCUGACCACUGGCCUGCCCCUUCUAUGGGAAUCACUACUGACCUUGCAGCUUAUUAUAGACUUAUAUGUAUGCAGAAAUAUAAUUUUAAUUACUUUUAUAUUGCUCCGAGAGUGAUACCAAAUCAUGAUAGAAAAUUUAAAUAAACAAAAUAGCCAAAUUAAUACCAGUAAUCACCCCAGUCAAAUAUACCCAGCUCACAUUUUGAUGUAAAAUCUUCCAGUACAGUUUCUAUGUACAUAUAUAUAUUUUUAGGAAGGAGAUUAUAUUUUACAUGCUGUUUUCUAGAACGUUCUUUUAAAACUGUAUCAUAAACAUCUUGCCUUAUAAUUCAAUAGUCUUCUACAACAAACUUUGCUAAUGAAUUUUUUUUUUUAUCAUGGUCA
Sequence (SHORT NAMES ENCODING)	UGGUCAUAGCGAAUCUUUCUAAAGCUCUGAUCAGUCAAGAAGGGGGUUGUAUCAAUCCUCAGAACCCUGAGUGGAACUUUCUACAGGAUUUAUUAGGAGAAAAACCUUCCCGGAAGCUGCAGAAGGACAAAUACAGAAUCCGUGUCUGGGAGAAACCUCGUGGCCUGGUCUCCAUUAUUUGAGAUGAGUUACAUCUUGGAGGUGAGGACGUGCCUCGUGGUCUAAAGCUUCGGCACAAGGGCCCAACUGGAAUUCCACUUACGGGCCUGAUCUUUUGGCCAGAAGGAGAUUAAAAAGAUGCCCCUCAAGAUGGCUGUGCCUGUCAGCUGCAUGGAGCUUCGUUCAAGUAUUUUCUGAGCCUGAUGGAUUUACAGUGAUCUUCAGUGGUCUGGGGAAUAACGCUGGUGGAACCAUGCACUGGAAUGACACACGCCCGGCACAUUUCAGGAUACUAAAAGUGGUUUUAAGGGAGGCUGUGGCUGAAUGCCUCAUGGm6AUUCUUACAGCUUGGAUGUCCAUGGGGGACGAAGGm6ACUGCAGCUGGCUGAGAGGGUUGAGAUCUCUGUUUACUUAGAUCUCUGCCAACUUCCUUUGGGUCUCCCUAUGGAAUGUAAGACCCCGACUCUUCCUGGUGAAGCAUCUGAUGCACGUUCCAYCCGGCGCUCAGCUGGGCUUGAGCUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGCACAUACAGCCAUCAUGAUGGUACUUUAAGUGGAGGCUGAAUCAUCUCCCCUUUGAGCUGCUUGGCACGUGGCUCCCUUGGUGUUCCCCUUUUACUGCCAGGACACUGAGAUUUGGAGAGAAUCCUGUUACACCUGGGAUUUAGGCACUUUCAAUCUGAAAAAAUACAUAUCCUUUCAGCACUCUGGACGGACUUGAGAACUGUCCUUACGUGACCUAAAGCUGGAGUAUUUUGAGAUUGGAGAAUUAAGGACAGAAUAACGGGCUCCCAGAUUCACAAGCCCCACCAAGAGGAUCACCCCAGGAACGCUUGGAGGCUGAGGAGUUCACUGAGGCUACUGCAUCUUGAGACUCAGGAUGAAGm6ACCCAGCUUGGGGCUGUCAAAGAGGCCUGAAGAGGCAGAACACCCCAGAGGAGCCUGGGGCCACCACCCAGCAUCACUGUGGGAAAACGGCAGCAGGAAAUGUCCUCUCGCCUGCGUGCUCCACCUCGGUCCACGCCUUCCCUCCUUCUGGAAGCCUUGCCUGACCACUGGCCUGCCCCUUCUAUGGGAAUCACUACUGACCUUGCAGCUUAUUAUAGACUUAUAUGUAUGCAGAAAUAUAAUUUUAAUUACUUUUAUAUUGCUCCGAGAGUGAUACCAAAUCAUGAUAGAAAAUUUAAAUAAACAAAAUAGCCAAAUUAAUACCAGUAAUCACCCCAGUCAAAUAUACCCAGCUCACAUUUUGAUGUAAAAUCUUCCAGUACAGUUUCUAUGUACAUAUAUAUAUUUUUAGGAAGGAGAUUAUAUUUUACAUGCUGUUUUCUAGAACGUUCUUUUAAAACUGUAUCAUAAACAUCUUGCCUUAUAAUUCAAUAGUCUUCUACAACAAACUUUGCUAAUGAAUUUUUUUUUUUAUCAUGGUCA
Sequence (MODOMICS CODE ENCODING)	UGGUCAUAGCGAAUCUUUCUAAAGCUCUGAUCAGUCAAGAAGGGGGUUGUAUCAAUCCUCAGAACCCUGAGUGGAACUUUCUACAGGAUUUAUUAGGAGAAAAACCUUCCCGGAAGCUGCAGAAGGACAAAUACAGAAUCCGUGUCUGGGAGAAACCUCGUGGCCUGGUCUCCAUUAUUUGAGAUGAGUUACAUCUUGGAGGUGAGGACGUGCCUCGUGGUCUAAAGCUUCGGCACAAGGGCCCAACUGGAAUUCCACUUACGGGCCUGAUCUUUUGGCCAGAAGGAGAUUAAAAAGAUGCCCCUCAAGAUGGCUGUGCCUGUCAGCUGCAUGGAGCUUCGUUCAAGUAUUUUCUGAGCCUGAUGGAUUUACAGUGAUCUUCAGUGGUCUGGGGAAUAACGCUGGUGGAACCAUGCACUGGAAUGACACACGCCCGGCACAUUUCAGGAUACUAAAAGUGGUUUUAAGGGAGGCUGUGGCUGAAUGCCUCAUGG2000000006AUUCUUACAGCUUGGAUGUCCAUGGGGGACGAAGG2000000006ACUGCAGCUGGCUGAGAGGGUUGAGAUCUCUGUUUACUUAGAUCUCUGCCAACUUCCUUUGGGUCUCCCUAUGGAAUGUAAGACCCCGACUCUUCCUGGUGAAGCAUCUGAUGCACGUUCCA2000000009UCCGGCGCUCAGCUGGGCUUGAGCUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGCACAUACAGCCAUCAUGAUGGUACUUUAAGUGGAGGCUGAAUCAUCUCCCCUUUGAGCUGCUUGGCACGUGGCUCCCUUGGUGUUCCCCUUUUACUGCCAGGACACUGAGAUUUGGAGAGAAUCCUGUUACACCUGGGAUUUAGGCACUUUCAAUCUGAAAAAAUACAUAUCCUUUCAGCACUCUGGACGGACUUGAGAACUGUCCUUACGUGACCUAAAGCUGGAGUAUUUUGAGAUUGGAGAAUUAAGGACAGAAUAACGGGCUCCCAGAUUCACAAGCCCCACCAAGAGGAUCACCCCAGGAACGCUUGGAGGCUGAGGAGUUCACUGAGGCUACUGCAUCUUGAGACUCAGGAUGAAG2000000006ACCCAGCUUGGGGCUGUCAAAGAGGCCUGAAGAGGCAGAACACCCCAGAGGAGCCUGGGGCCACCACCCAGCAUCACUGUGGGAAAACGGCAGCAGGAAAUGUCCUCUCGCCUGCGUGCUCCACCUCGGUCCACGCCUUCCCUCCUUCUGGAAGCCUUGCCUGACCACUGGCCUGCCCCUUCUAUGGGAAUCACUACUGACCUUGCAGCUUAUUAUAGACUUAUAUGUAUGCAGAAAUAUAAUUUUAAUUACUUUUAUAUUGCUCCGAGAGUGAUACCAAAUCAUGAUAGAAAAUUUAAAUAAACAAAAUAGCCAAAUUAAUACCAGUAAUCACCCCAGUCAAAUAUACCCAGCUCACAUUUUGAUGUAAAAUCUUCCAGUACAGUUUCUAUGUACAUAUAUAUAUUUUUAGGAAGGAGAUUAUAUUUUACAUGCUGUUUUCUAGAACGUUCUUUUAAAACUGUAUCAUAAACAUCUUGCCUUAUAAUUCAAUAGUCUUCUACAACAAACUUUGCUAAUGAAUUUUUUUUUUUAUCAUGGUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	495	530	652	1086
Modification Positions	m6A	m6A	Y	m6A
Genomic Coordinates	8:127890819:+	8:127890854:+	8:127890976:+	8:128096633:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8