Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000524000
Gene ID: ENSG00000156804
Gene Name: FBXO32
Sequence (UNICHARACTER ENCODING) UGAAUCGCUGCUCUCUGGCCCCCCCACCUAUUGUCACCCUUCUCUCUGCAGCCUGCCUUCAAAGGCCUCACCUUCACUGACCUGCCUUUGUGCCUACAACUGAACAUCAUGCAGAGGCUGAGCGACGGGCGGGACCUGGUCAGCCUGGGCCAGGCUGCCCCCGACCUGCACGUGCUCAGCGAAGACCGGCUGCUGUGGAAGAAACUCUGCCAGUACCACUUCUCCGAGCGGCAGAUCCGCAAACGAUUAAUUCUGUCAGACAAAGGGCAGCUGGAUUGGAAGAAGAUGUAUUUCAAACUUGUCCGAUGUUACCCAAGGAAAGAGCAGUAUGGAGAUACCCUUCAGCUCUGCAAACACUGUCACAUCCUUUCCUGGAAGGGCACUGACCAUCCGUGCACUGCCAAUAACCCAGAGAGCUGCUCCGUUUCACUUUCACCCCAGGЖCUUUAUCAACUUGUUCAAGUUCUGAAUCCCAGCACAUGACAACACUUCAGAAGGGUCCCCCUGCUGACUGGAGAGCUGGGAAUAUGGCAUUUGGЖCACUUCAUUUGUAAAUAGUGUACAUUUUAAACAUUGGCUCGAAACUUCAGAGAUAAGUCAUGGAGAGGЖCAUUGGAGGGGAGAAAUGCAGUUGCUGACUGGGAAUUUAAGAAUGUGAACUUCUCACUAGAAUUGGUAUGGAAAAGCAAAAUACUGUAAAUAAЖCUUUUUUUCUAACAAUUUGCCAGCAAGACUAUAA
Sequence (SHORT NAMES ENCODING) UGAAUCGCUGCUCUCUGGCCCCCCCACCUAUUGUCACCCUUCUCUCUGCAGCCUGCCUUCAAAGGCCUCACCUUCACUGACCUGCCUUUGUGCCUACAACUGAACAUCAUGCAGAGGCUGAGCGACGGGCGGGACCUGGUCAGCCUGGGCCAGGCUGCCCCCGACCUGCACGUGCUCAGCGAAGACCGGCUGCUGUGGAAGAAACUCUGCCAGUACCACUUCUCCGAGCGGCAGAUCCGCAAACGAUUAAUUCUGUCAGACAAAGGGCAGCUGGAUUGGAAGAAGAUGUAUUUCAAACUUGUCCGAUGUUACCCAAGGAAAGAGCAGUAUGGAGAUACCCUUCAGCUCUGCAAACACUGUCACAUCCUUUCCUGGAAGGGCACUGACCAUCCGUGCACUGCCAAUAACCCAGAGAGCUGCUCCGUUUCACUUUCACCCCAGGm6ACUUUAUCAACUUGUUCAAGUUCUGAAUCCCAGCACAUGACAACACUUCAGAAGGGUCCCCCUGCUGACUGGAGAGCUGGGAAUAUGGCAUUUGGm6ACACUUCAUUUGUAAAUAGUGUACAUUUUAAACAUUGGCUCGAAACUUCAGAGAUAAGUCAUGGAGAGGm6ACAUUGGAGGGGAGAAAUGCAGUUGCUGACUGGGAAUUUAAGAAUGUGAACUUCUCACUAGAAUUGGUAUGGAAAAGCAAAAUACUGUAAAUAAm6ACUUUUUUUCUAACAAUUUGCCAGCAAGACUAUAA
Sequence (MODOMICS CODE ENCODING) UGAAUCGCUGCUCUCUGGCCCCCCCACCUAUUGUCACCCUUCUCUCUGCAGCCUGCCUUCAAAGGCCUCACCUUCACUGACCUGCCUUUGUGCCUACAACUGAACAUCAUGCAGAGGCUGAGCGACGGGCGGGACCUGGUCAGCCUGGGCCAGGCUGCCCCCGACCUGCACGUGCUCAGCGAAGACCGGCUGCUGUGGAAGAAACUCUGCCAGUACCACUUCUCCGAGCGGCAGAUCCGCAAACGAUUAAUUCUGUCAGACAAAGGGCAGCUGGAUUGGAAGAAGAUGUAUUUCAAACUUGUCCGAUGUUACCCAAGGAAAGAGCAGUAUGGAGAUACCCUUCAGCUCUGCAAACACUGUCACAUCCUUUCCUGGAAGGGCACUGACCAUCCGUGCACUGCCAAUAACCCAGAGAGCUGCUCCGUUUCACUUUCACCCCAGG2000000006ACUUUAUCAACUUGUUCAAGUUCUGAAUCCCAGCACAUGACAACACUUCAGAAGGGUCCCCCUGCUGACUGGAGAGCUGGGAAUAUGGCAUUUGG2000000006ACACUUCAUUUGUAAAUAGUGUACAUUUUAAACAUUGGCUCGAAACUUCAGAGAUAAGUCAUGGAGAGG2000000006ACAUUGGAGGGGAGAAAUGCAGUUGCUGACUGGGAAUUUAAGAAUGUGAACUUCUCACUAGAAUUGGUAUGGAAAAGCAAAAUACUGUAAAUAA2000000006ACUUUUUUUCUAACAAUUUGCCAGCAAGACUAUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 443 538 607 701
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 8:123503398:- 8:123503303:- 8:123503234:- 8:123503140:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
VyCX26p5UBRL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G