Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000523933
Gene ID: ENSG00000164930
Gene Name: FZD6
Sequence (UNICHARACTER ENCODING) UCUCGCUCCCCGUGCGGCUCUCGAGGCAGCUCCAGUCCCGGACGCAACCCCGGAGCCGUCUCAGGUCCCUGGGGGGAACGGUGGGUUAGACGGGGACGGGAAGGGACAGCGGCCUUCGACCGCCCCCCGAGUAAUUGACCCAGGACUCAUUUUCAGGAAAGCCUGAAAAUGAGUAAAAUAGUGAAAUGAGGAAUUUGAACAUUUUAUCUUUGGAUGGGGAUCUUCUGAGGAUGCAAAGAGUGAUUCAUCCAAGCCAUGUGAUGUAUGAAAAUGGCCUACAACAUGACGUUUUUCCCUAAUCUGAUGGGUCAUUAUGACCAGAGUAUUGCCGCGGUGGAAAUGGAGCAUUUUCUUCCUCUCGCAAAUCUGGAAUGUUCACCAAACAUUGAAACUUUCCUCUGCAAAGCAUUUGUACCAACCUGCAUAGAACAAAUUCAUGUGGUUCCACCUUGUCGUAAACUUUGUGAGAAAGUAUAUUCUGAUUGCAAAAAAUUAAUUGACACUUUUGGGAUCCGAUGGCCUGAGGAGCUUGAAUGUGACAGCUGCAGGAAGAAAAUGGAGUUGUGAAGCCAUCGAGCAAAAAGCAGUGUGGUUUCAUGCUGUUGCAUGGGGAACACCAGGUUUCCUGЖCUGUUAUGCUUCUUGCUAUGAACAAAGUUGAAGGAGACAACAUUAGUGGAGUUUGCUUUGUUGGCCUUUAUGACCUGGAUGCUUCUCGCUACUUUGUACUCUUGCCACUGUGCCUUUGUGUGUUUGUUGGGCUCUCUCUUCUUUUAGCUGGCAUUAUUUCCUUAAAUCAUGUUCGACAAGUCAUACAACAUGAUGGCCGGAACCAAGAAAAACUAAAGAAAUUUAUGAUUCGAAUUGGAGUCUUCAGCGGCUUGUAUCUUGUGCCAUUAGUGACACUUCUCGGAUGUUACGUCUAUGAGCAAGUGAACAGGAUUACCUGGGAGAUAACUUGGGUCUCUGAUCAUUGUCGUCAGUACCAUAUCCCAUGUCCUUAUCAGGCAAAAGCAAAAGCUCGACCAGAAUUGGCUUUAUUUAUGAUAAAAUACCUGAUGACAUUAAUUGUUGGCAUCUCUGCUGUCUUCUGGGUUGGAAGCAAAAAGACAUGCACAGAAUGGGCUGGGUUUUUUAAACGAAAUCGCAAGAGAGAUCCAAUCAGUGAAAGUCGAAGAGUACUACAGGAAUCAUGUGAGUUUUUCUUAAAGCACAAUUCUAAAGUUAAACACAAAAAGAAGCACUAUAAACCAAGUUCACACAAGCUGAAGGUCAUUUCCAAAUCCAUGGGAACCAGCACAGGAGCUACAGCAAAUCAUGGCACUUCUGCAGUAGCAAUUACUAGCCAUGAUUACCUAGGЖCAAGAAЖCUUUGACAGAAAUCCAAACCUCACCAGAAACAUCAAUGAGAGAGGUGAAAGCGGACGGAGCUAGCACCCCCAGGUUAAGAGAACAGGЖCUGUGGUGAACCUGCCU
Sequence (SHORT NAMES ENCODING) UCUCGCUCCCCGUGCGGCUCUCGAGGCAGCUCCAGUCCCGGACGCAACCCCGGAGCCGUCUCAGGUCCCUGGGGGGAACGGUGGGUUAGACGGGGACGGGAAGGGACAGCGGCCUUCGACCGCCCCCCGAGUAAUUGACCCAGGACUCAUUUUCAGGAAAGCCUGAAAAUGAGUAAAAUAGUGAAAUGAGGAAUUUGAACAUUUUAUCUUUGGAUGGGGAUCUUCUGAGGAUGCAAAGAGUGAUUCAUCCAAGCCAUGUGAUGUAUGAAAAUGGCCUACAACAUGACGUUUUUCCCUAAUCUGAUGGGUCAUUAUGACCAGAGUAUUGCCGCGGUGGAAAUGGAGCAUUUUCUUCCUCUCGCAAAUCUGGAAUGUUCACCAAACAUUGAAACUUUCCUCUGCAAAGCAUUUGUACCAACCUGCAUAGAACAAAUUCAUGUGGUUCCACCUUGUCGUAAACUUUGUGAGAAAGUAUAUUCUGAUUGCAAAAAAUUAAUUGACACUUUUGGGAUCCGAUGGCCUGAGGAGCUUGAAUGUGACAGCUGCAGGAAGAAAAUGGAGUUGUGAAGCCAUCGAGCAAAAAGCAGUGUGGUUUCAUGCUGUUGCAUGGGGAACACCAGGUUUCCUGm6ACUGUUAUGCUUCUUGCUAUGAACAAAGUUGAAGGAGACAACAUUAGUGGAGUUUGCUUUGUUGGCCUUUAUGACCUGGAUGCUUCUCGCUACUUUGUACUCUUGCCACUGUGCCUUUGUGUGUUUGUUGGGCUCUCUCUUCUUUUAGCUGGCAUUAUUUCCUUAAAUCAUGUUCGACAAGUCAUACAACAUGAUGGCCGGAACCAAGAAAAACUAAAGAAAUUUAUGAUUCGAAUUGGAGUCUUCAGCGGCUUGUAUCUUGUGCCAUUAGUGACACUUCUCGGAUGUUACGUCUAUGAGCAAGUGAACAGGAUUACCUGGGAGAUAACUUGGGUCUCUGAUCAUUGUCGUCAGUACCAUAUCCCAUGUCCUUAUCAGGCAAAAGCAAAAGCUCGACCAGAAUUGGCUUUAUUUAUGAUAAAAUACCUGAUGACAUUAAUUGUUGGCAUCUCUGCUGUCUUCUGGGUUGGAAGCAAAAAGACAUGCACAGAAUGGGCUGGGUUUUUUAAACGAAAUCGCAAGAGAGAUCCAAUCAGUGAAAGUCGAAGAGUACUACAGGAAUCAUGUGAGUUUUUCUUAAAGCACAAUUCUAAAGUUAAACACAAAAAGAAGCACUAUAAACCAAGUUCACACAAGCUGAAGGUCAUUUCCAAAUCCAUGGGAACCAGCACAGGAGCUACAGCAAAUCAUGGCACUUCUGCAGUAGCAAUUACUAGCCAUGAUUACCUAGGm6ACAAGAAm6ACUUUGACAGAAAUCCAAACCUCACCAGAAACAUCAAUGAGAGAGGUGAAAGCGGACGGAGCUAGCACCCCCAGGUUAAGAGAACAGGm6ACUGUGGUGAACCUGCCU
Sequence (MODOMICS CODE ENCODING) UCUCGCUCCCCGUGCGGCUCUCGAGGCAGCUCCAGUCCCGGACGCAACCCCGGAGCCGUCUCAGGUCCCUGGGGGGAACGGUGGGUUAGACGGGGACGGGAAGGGACAGCGGCCUUCGACCGCCCCCCGAGUAAUUGACCCAGGACUCAUUUUCAGGAAAGCCUGAAAAUGAGUAAAAUAGUGAAAUGAGGAAUUUGAACAUUUUAUCUUUGGAUGGGGAUCUUCUGAGGAUGCAAAGAGUGAUUCAUCCAAGCCAUGUGAUGUAUGAAAAUGGCCUACAACAUGACGUUUUUCCCUAAUCUGAUGGGUCAUUAUGACCAGAGUAUUGCCGCGGUGGAAAUGGAGCAUUUUCUUCCUCUCGCAAAUCUGGAAUGUUCACCAAACAUUGAAACUUUCCUCUGCAAAGCAUUUGUACCAACCUGCAUAGAACAAAUUCAUGUGGUUCCACCUUGUCGUAAACUUUGUGAGAAAGUAUAUUCUGAUUGCAAAAAAUUAAUUGACACUUUUGGGAUCCGAUGGCCUGAGGAGCUUGAAUGUGACAGCUGCAGGAAGAAAAUGGAGUUGUGAAGCCAUCGAGCAAAAAGCAGUGUGGUUUCAUGCUGUUGCAUGGGGAACACCAGGUUUCCUG2000000006ACUGUUAUGCUUCUUGCUAUGAACAAAGUUGAAGGAGACAACAUUAGUGGAGUUUGCUUUGUUGGCCUUUAUGACCUGGAUGCUUCUCGCUACUUUGUACUCUUGCCACUGUGCCUUUGUGUGUUUGUUGGGCUCUCUCUUCUUUUAGCUGGCAUUAUUUCCUUAAAUCAUGUUCGACAAGUCAUACAACAUGAUGGCCGGAACCAAGAAAAACUAAAGAAAUUUAUGAUUCGAAUUGGAGUCUUCAGCGGCUUGUAUCUUGUGCCAUUAGUGACACUUCUCGGAUGUUACGUCUAUGAGCAAGUGAACAGGAUUACCUGGGAGAUAACUUGGGUCUCUGAUCAUUGUCGUCAGUACCAUAUCCCAUGUCCUUAUCAGGCAAAAGCAAAAGCUCGACCAGAAUUGGCUUUAUUUAUGAUAAAAUACCUGAUGACAUUAAUUGUUGGCAUCUCUGCUGUCUUCUGGGUUGGAAGCAAAAAGACAUGCACAGAAUGGGCUGGGUUUUUUAAACGAAAUCGCAAGAGAGAUCCAAUCAGUGAAAGUCGAAGAGUACUACAGGAAUCAUGUGAGUUUUUCUUAAAGCACAAUUCUAAAGUUAAACACAAAAAGAAGCACUAUAAACCAAGUUCACACAAGCUGAAGGUCAUUUCCAAAUCCAUGGGAACCAGCACAGGAGCUACAGCAAAUCAUGGCACUUCUGCAGUAGCAAUUACUAGCCAUGAUUACCUAGG2000000006ACAAGAA2000000006ACUUUGACAGAAAUCCAAACCUCACCAGAAACAUCAAUGAGAGAGGUGAAAGCGGACGGAGCUAGCACCCCCAGGUUAAGAGAACAGG2000000006ACUGUGGUGAACCUGCCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 629 1360 1367 1455
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 8:103325121:+ 8:103329859:+ 8:103329866:+ 8:103329954:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
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Q36pf44ZRvxu
QmcpiJ88DBDn
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VL7zkHvkfkoB
VyCX26p5UBRL
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6UuHp6YApVKv
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VL7zkHvkfkoB
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6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
93arJtwJmuS9
BkoLW2CBToyL
Lny8GcCeVGc9
dknfVe6BK8aP