Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000534791
Gene ID: ENSG00000178719
Gene Name: GRINA
Sequence (UNICHARACTER ENCODING) GGGCUACCCACAGGGCCCCUACCCACAAGAGGGCUACCCACAGGGCCCCUACCCCCAAGGGGGCUACCCCCAGGGGCCAUAUCCCCAGAGCCCCUUCCCCCCCAACCCCUAUGGЖCAGCCACAGGUCUUCCCAGGACAAGACCCUGACUCACCCCAGCAUGGAAACUACCAGGAGGAGGGUCCCCCAPCCUACUAUGACAACCAGGACUUCCCUGCCACCAACUGGGAUGACAAGAGCAUCCGACAGGCCUUCAPCCGCAAGGUGUUCCUAGUGCUGACCUUGCAGCUGUCGGUGACCCUGUCCACGGUGUCUGUGUUCACUUUUGUUGCGGAGGUGAAGGGCUUUGUCCGGGAGAAUGUCUGGACCUACUAUGUCUCCUAUGCUGUCUUCUUCAUCUCUCUCAUCGUCCUCAGCUGUUGUGGGGACUUCCGGCGAAAGCACCCCUGGAACCUUGUUGCACUGGUAACCCCCAAACCUGAGCCUCUGUGCCUGGGUCCGGCCAUGCAGUCCCACACGCCCACUCUUCCGGGCCUGGUCACCGUGGUUCUCCUUGUGCUCAUGAGGCAGGGGCCGGCAGGGGUGGCAUGGGGGCACACACCCAAGGUCAGCCUGUGUCUCCCAACUGCAGUCGGUCCUGACCGCCAGCCUGUCGUACAUGGUGGGGAUGAUCGCCAGCUUCUACЖACЖCCGAGGCAGUCAUCAUGGCCGUGGGCAUCACCACAGCCGUCUGCUUCACCGUCGUCAUCUUCUCCAUGCAGACCCGCUACGACUUCACCUCAUGCAUGGGCGUGCUCCUGGUGAGCAUGGUGGUGCUCUUCAUCUUCGCCAUUCUCUGCAUCUUCAPCCGGAACCGCAPCCUGGAGAUCGUGUACGCCUCACUGGGCGCUCUGCUCUUCACCUGCUUCCUCGCAGUGGACACCCAGCUGCUACUGGGGAACAAGCAGCUGUCCCUGAGCCCAGAAGAGUAUGUGUUUGCUGCGCUGAACCUGUACACAGЖCAUCAUCAACAUCUUCCUGUACAPCCUCACCAUCAUUGGCCGCGCCAAGGAGU
Sequence (SHORT NAMES ENCODING) GGGCUACCCACAGGGCCCCUACCCACAAGAGGGCUACCCACAGGGCCCCUACCCCCAAGGGGGCUACCCCCAGGGGCCAUAUCCCCAGAGCCCCUUCCCCCCCAACCCCUAUGGm6ACAGCCACAGGUCUUCCCAGGACAAGACCCUGACUCACCCCAGCAUGGAAACUACCAGGAGGAGGGUCCCCCAYCCUACUAUGACAACCAGGACUUCCCUGCCACCAACUGGGAUGACAAGAGCAUCCGACAGGCCUUCAYCCGCAAGGUGUUCCUAGUGCUGACCUUGCAGCUGUCGGUGACCCUGUCCACGGUGUCUGUGUUCACUUUUGUUGCGGAGGUGAAGGGCUUUGUCCGGGAGAAUGUCUGGACCUACUAUGUCUCCUAUGCUGUCUUCUUCAUCUCUCUCAUCGUCCUCAGCUGUUGUGGGGACUUCCGGCGAAAGCACCCCUGGAACCUUGUUGCACUGGUAACCCCCAAACCUGAGCCUCUGUGCCUGGGUCCGGCCAUGCAGUCCCACACGCCCACUCUUCCGGGCCUGGUCACCGUGGUUCUCCUUGUGCUCAUGAGGCAGGGGCCGGCAGGGGUGGCAUGGGGGCACACACCCAAGGUCAGCCUGUGUCUCCCAACUGCAGUCGGUCCUGACCGCCAGCCUGUCGUACAUGGUGGGGAUGAUCGCCAGCUUCUACm6AACm6ACCGAGGCAGUCAUCAUGGCCGUGGGCAUCACCACAGCCGUCUGCUUCACCGUCGUCAUCUUCUCCAUGCAGACCCGCUACGACUUCACCUCAUGCAUGGGCGUGCUCCUGGUGAGCAUGGUGGUGCUCUUCAUCUUCGCCAUUCUCUGCAUCUUCAYCCGGAACCGCAYCCUGGAGAUCGUGUACGCCUCACUGGGCGCUCUGCUCUUCACCUGCUUCCUCGCAGUGGACACCCAGCUGCUACUGGGGAACAAGCAGCUGUCCCUGAGCCCAGAAGAGUAUGUGUUUGCUGCGCUGAACCUGUACACAGm6ACAUCAUCAACAUCUUCCUGUACAYCCUCACCAUCAUUGGCCGCGCCAAGGAGU
Sequence (MODOMICS CODE ENCODING) GGGCUACCCACAGGGCCCCUACCCACAAGAGGGCUACCCACAGGGCCCCUACCCCCAAGGGGGCUACCCCCAGGGGCCAUAUCCCCAGAGCCCCUUCCCCCCCAACCCCUAUGG2000000006ACAGCCACAGGUCUUCCCAGGACAAGACCCUGACUCACCCCAGCAUGGAAACUACCAGGAGGAGGGUCCCCCA2000000009UCCUACUAUGACAACCAGGACUUCCCUGCCACCAACUGGGAUGACAAGAGCAUCCGACAGGCCUUCA2000000009UCCGCAAGGUGUUCCUAGUGCUGACCUUGCAGCUGUCGGUGACCCUGUCCACGGUGUCUGUGUUCACUUUUGUUGCGGAGGUGAAGGGCUUUGUCCGGGAGAAUGUCUGGACCUACUAUGUCUCCUAUGCUGUCUUCUUCAUCUCUCUCAUCGUCCUCAGCUGUUGUGGGGACUUCCGGCGAAAGCACCCCUGGAACCUUGUUGCACUGGUAACCCCCAAACCUGAGCCUCUGUGCCUGGGUCCGGCCAUGCAGUCCCACACGCCCACUCUUCCGGGCCUGGUCACCGUGGUUCUCCUUGUGCUCAUGAGGCAGGGGCCGGCAGGGGUGGCAUGGGGGCACACACCCAAGGUCAGCCUGUGUCUCCCAACUGCAGUCGGUCCUGACCGCCAGCCUGUCGUACAUGGUGGGGAUGAUCGCCAGCUUCUAC2000000006AAC2000000006ACCGAGGCAGUCAUCAUGGCCGUGGGCAUCACCACAGCCGUCUGCUUCACCGUCGUCAUCUUCUCCAUGCAGACCCGCUACGACUUCACCUCAUGCAUGGGCGUGCUCCUGGUGAGCAUGGUGGUGCUCUUCAUCUUCGCCAUUCUCUGCAUCUUCA2000000009UCCGGAACCGCA2000000009UCCUGGAGAUCGUGUACGCCUCACUGGGCGCUCUGCUCUUCACCUGCUUCCUCGCAGUGGACACCCAGCUGCUACUGGGGAACAAGCAGCUGUCCCUGAGCCCAGAAGAGUAUGUGUUUGCUGCGCUGAACCUGUACACAG2000000006ACAUCAUCAACAUCUUCCUGUACA2000000009UCCUCACCAUCAUUGGCCGCGCCAAGGAGU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 115 188 255 684 687 844 856 997 1021
Modification Positions m6A Y Y m6A m6A Y Y m6A Y
Genomic Coordinates 8:143991568:+ 8:143991730:+ 8:143991797:+ 8:143992299:+ 8:143992302:+ 8:143992550:+ 8:143992562:+ 8:143992786:+ 8:143992810:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs ArijeGVTwYBw
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8