Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000276500
Gene ID: ENSG00000147509
Gene Name: RGS20
Sequence (UNICHARACTER ENCODING) GGGAGAAGAGGGCUAGAGCAAAGACCGAGAGCCGGAGAAAGGCGAAAGGCGCGGUGAGCAAUCGCCGACGUAGAGAGGGCAGCCCUCCGCGCUGCAAUAUUGAGAAGGCACCCGCGGGACGCAUGCGCACGGCGGACGGAGGCGAGCCGGCCGGGGCUUCCUCCCCGGCCGGCAGGGUGGACGGUGGGCUCCAGAUGGGAUCAGAGCGGAUGGAGAUGCGGAAGCGGCAGAUGCCCGCCGCCCAGGACACACCAGGCGCCGCCCCAGGCCAGCCCGGAGCGGGGAGUCGCGGGUCCAACGCAUGCUGCUUCUGCUGGUGCUGCUGUUGUAGCUGCUCGUGUCUCACUGUUAGAAACCAGGAAGAUCAGAGGCCCACAAUAGCUUCCCACGAACUCAGAGCAGAUCUUCCAACCUGGGAAGAAAGCCCUGCUCCUACUCUGGAAGAAGUCAACGCCUGGGCUCAGUCAUUUGACAAAUUAAUGGUCACUCCAGCAGGAAGGAAUGCAUUCCGUGAAUUCCUCCGAACAGAAUUCAGUGAGGAAAAUAUGCUCUUCUGGAUGGCCUGUGAGGAACUGAAAAAGGAAGCUAAUAAAAACAUUAUUGAAGAGAAAGCAAGGAUAAUCUAUGAAGACUACAUUUCUAUACUUUCUCCUAAGGAGGUGAGCUUAGACUCCCGGGUGAGAGAAGUGAUCAACAGAAACAUGGUGGAGCCAUCCCAACACAUAUUCGAUGAUGCUCAACUUCAGAUUUACACCCUGAUGCACAGAGЖCUCAUAUCCUCGAUUCAUGAЖCUCUGCUGUCUAUAAGGACUUGCUUCAGUCCUUAUCGGAGAAAUCUAUUGAAGCAUAGGAUUUUUCAAAUAUAUUUAUUAUUAAUAAAAUAAUAAAAGAAUUCAUGGGCUACAACUAGCACAGGGAAUUUAGAGGUUGUAGCAUCUUCUGCUGGAGUAAUACUCAGGCUAUUCUAAUAACAGAUGAUUCCUUCAACAGACUGCUAUAUAUUCACCAUGUAAACUGCAGCCACCUPUAGUGAUACUUUUGAAAAAAAAAAAUAAAGGGAUAUGGCUGUUGUAGAAAGAUAGCGUAUUUGCAUUUACAAUAACAGUAGCAUGUUGUCAGUGGCCAAGGCUACACAGAAGGCUCCCUGCUGCCCGGAGCAGGUACAUCCACCAGAGCAAAGGGAACCACUUUUAUUUUGCAUGAGUUUGGUAACUGAUUACUCUCCCCUCAAAGAAAAGACAUUCAGGUGUUUCUCAACGACAUCUUCUGUCCAGCAAGCUCGGUUUGAAUACGUCACUUACCAGUGCCAUUGCAGGACCCAAAUUCACAGUUCAUAAAAGAUGUGACCACUACAUGUAAAAAUAGCAUUCUACUUGAUCUUACAGUAUGUAUGUAUGUAUGUAUGGAGACAUAUGUGUGCGUGUGGAUGUCUACAUGGUUAAUGGAAAGCACUGUGCUCUGAAGUGGAUCAGUCUCAAGUGUCUGGUAACAGCAGCAGUGCUUAGAAAAUUCUUUUGUUGAAAAGAGUUACUGUUAUUAUCAGAAUUUGCCAACCUAAAGAAUGAAUUUUUAAAUUCAUAACUUGGUCAUGUUCACAACAAAACUGUCAAAUAAGCAUAUUUCCAUUUUUAUUACUGAAAGAAAUAUGGGCAUUUUCAUUCUUUAA
Sequence (SHORT NAMES ENCODING) GGGAGAAGAGGGCUAGAGCAAAGACCGAGAGCCGGAGAAAGGCGAAAGGCGCGGUGAGCAAUCGCCGACGUAGAGAGGGCAGCCCUCCGCGCUGCAAUAUUGAGAAGGCACCCGCGGGACGCAUGCGCACGGCGGACGGAGGCGAGCCGGCCGGGGCUUCCUCCCCGGCCGGCAGGGUGGACGGUGGGCUCCAGAUGGGAUCAGAGCGGAUGGAGAUGCGGAAGCGGCAGAUGCCCGCCGCCCAGGACACACCAGGCGCCGCCCCAGGCCAGCCCGGAGCGGGGAGUCGCGGGUCCAACGCAUGCUGCUUCUGCUGGUGCUGCUGUUGUAGCUGCUCGUGUCUCACUGUUAGAAACCAGGAAGAUCAGAGGCCCACAAUAGCUUCCCACGAACUCAGAGCAGAUCUUCCAACCUGGGAAGAAAGCCCUGCUCCUACUCUGGAAGAAGUCAACGCCUGGGCUCAGUCAUUUGACAAAUUAAUGGUCACUCCAGCAGGAAGGAAUGCAUUCCGUGAAUUCCUCCGAACAGAAUUCAGUGAGGAAAAUAUGCUCUUCUGGAUGGCCUGUGAGGAACUGAAAAAGGAAGCUAAUAAAAACAUUAUUGAAGAGAAAGCAAGGAUAAUCUAUGAAGACUACAUUUCUAUACUUUCUCCUAAGGAGGUGAGCUUAGACUCCCGGGUGAGAGAAGUGAUCAACAGAAACAUGGUGGAGCCAUCCCAACACAUAUUCGAUGAUGCUCAACUUCAGAUUUACACCCUGAUGCACAGAGm6ACUCAUAUCCUCGAUUCAUGAm6ACUCUGCUGUCUAUAAGGACUUGCUUCAGUCCUUAUCGGAGAAAUCUAUUGAAGCAUAGGAUUUUUCAAAUAUAUUUAUUAUUAAUAAAAUAAUAAAAGAAUUCAUGGGCUACAACUAGCACAGGGAAUUUAGAGGUUGUAGCAUCUUCUGCUGGAGUAAUACUCAGGCUAUUCUAAUAACAGAUGAUUCCUUCAACAGACUGCUAUAUAUUCACCAUGUAAACUGCAGCCACCUYUAGUGAUACUUUUGAAAAAAAAAAAUAAAGGGAUAUGGCUGUUGUAGAAAGAUAGCGUAUUUGCAUUUACAAUAACAGUAGCAUGUUGUCAGUGGCCAAGGCUACACAGAAGGCUCCCUGCUGCCCGGAGCAGGUACAUCCACCAGAGCAAAGGGAACCACUUUUAUUUUGCAUGAGUUUGGUAACUGAUUACUCUCCCCUCAAAGAAAAGACAUUCAGGUGUUUCUCAACGACAUCUUCUGUCCAGCAAGCUCGGUUUGAAUACGUCACUUACCAGUGCCAUUGCAGGACCCAAAUUCACAGUUCAUAAAAGAUGUGACCACUACAUGUAAAAAUAGCAUUCUACUUGAUCUUACAGUAUGUAUGUAUGUAUGUAUGGAGACAUAUGUGUGCGUGUGGAUGUCUACAUGGUUAAUGGAAAGCACUGUGCUCUGAAGUGGAUCAGUCUCAAGUGUCUGGUAACAGCAGCAGUGCUUAGAAAAUUCUUUUGUUGAAAAGAGUUACUGUUAUUAUCAGAAUUUGCCAACCUAAAGAAUGAAUUUUUAAAUUCAUAACUUGGUCAUGUUCACAACAAAACUGUCAAAUAAGCAUAUUUCCAUUUUUAUUACUGAAAGAAAUAUGGGCAUUUUCAUUCUUUAA
Sequence (MODOMICS CODE ENCODING) GGGAGAAGAGGGCUAGAGCAAAGACCGAGAGCCGGAGAAAGGCGAAAGGCGCGGUGAGCAAUCGCCGACGUAGAGAGGGCAGCCCUCCGCGCUGCAAUAUUGAGAAGGCACCCGCGGGACGCAUGCGCACGGCGGACGGAGGCGAGCCGGCCGGGGCUUCCUCCCCGGCCGGCAGGGUGGACGGUGGGCUCCAGAUGGGAUCAGAGCGGAUGGAGAUGCGGAAGCGGCAGAUGCCCGCCGCCCAGGACACACCAGGCGCCGCCCCAGGCCAGCCCGGAGCGGGGAGUCGCGGGUCCAACGCAUGCUGCUUCUGCUGGUGCUGCUGUUGUAGCUGCUCGUGUCUCACUGUUAGAAACCAGGAAGAUCAGAGGCCCACAAUAGCUUCCCACGAACUCAGAGCAGAUCUUCCAACCUGGGAAGAAAGCCCUGCUCCUACUCUGGAAGAAGUCAACGCCUGGGCUCAGUCAUUUGACAAAUUAAUGGUCACUCCAGCAGGAAGGAAUGCAUUCCGUGAAUUCCUCCGAACAGAAUUCAGUGAGGAAAAUAUGCUCUUCUGGAUGGCCUGUGAGGAACUGAAAAAGGAAGCUAAUAAAAACAUUAUUGAAGAGAAAGCAAGGAUAAUCUAUGAAGACUACAUUUCUAUACUUUCUCCUAAGGAGGUGAGCUUAGACUCCCGGGUGAGAGAAGUGAUCAACAGAAACAUGGUGGAGCCAUCCCAACACAUAUUCGAUGAUGCUCAACUUCAGAUUUACACCCUGAUGCACAGAG2000000006ACUCAUAUCCUCGAUUCAUGA2000000006ACUCUGCUGUCUAUAAGGACUUGCUUCAGUCCUUAUCGGAGAAAUCUAUUGAAGCAUAGGAUUUUUCAAAUAUAUUUAUUAUUAAUAAAAUAAUAAAAGAAUUCAUGGGCUACAACUAGCACAGGGAAUUUAGAGGUUGUAGCAUCUUCUGCUGGAGUAAUACUCAGGCUAUUCUAAUAACAGAUGAUUCCUUCAACAGACUGCUAUAUAUUCACCAUGUAAACUGCAGCCACCU2000000009UUAGUGAUACUUUUGAAAAAAAAAAAUAAAGGGAUAUGGCUGUUGUAGAAAGAUAGCGUAUUUGCAUUUACAAUAACAGUAGCAUGUUGUCAGUGGCCAAGGCUACACAGAAGGCUCCCUGCUGCCCGGAGCAGGUACAUCCACCAGAGCAAAGGGAACCACUUUUAUUUUGCAUGAGUUUGGUAACUGAUUACUCUCCCCUCAAAGAAAAGACAUUCAGGUGUUUCUCAACGACAUCUUCUGUCCAGCAAGCUCGGUUUGAAUACGUCACUUACCAGUGCCAUUGCAGGACCCAAAUUCACAGUUCAUAAAAGAUGUGACCACUACAUGUAAAAAUAGCAUUCUACUUGAUCUUACAGUAUGUAUGUAUGUAUGUAUGGAGACAUAUGUGUGCGUGUGGAUGUCUACAUGGUUAAUGGAAAGCACUGUGCUCUGAAGUGGAUCAGUCUCAAGUGUCUGGUAACAGCAGCAGUGCUUAGAAAAUUCUUUUGUUGAAAAGAGUUACUGUUAUUAUCAGAAUUUGCCAACCUAAAGAAUGAAUUUUUAAAUUCAUAACUUGGUCAUGUUCACAACAAAACUGUCAAAUAAGCAUAUUUCCAUUUUUAUUACUGAAAGAAAUAUGGGCAUUUUCAUUCUUUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 769 790 1025
Modification Positions m6A m6A Y
Genomic Coordinates 8:53958379:+ 8:53958400:+ 8:53958635:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
6AyXsheySjfx
aivdrAsbdKEU
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
bXBqJigD9oV3
Yfn77uLS5tv8