General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000606853
Gene ID:	ENSG00000246089
Gene Name:	MCPH1-DT
Sequence (UNICHARACTER ENCODING)	GCGCCGCCGUCACCGCGCUCCGCUGAAUCCGCGUUUCCGGGAUUUCUCUGUAGGUGAGGCGGGAGGCUGGAGGGAGCUGAGCCCCCGGGGAGGGGGCCCGAUUCCGCCUCGCCGCGCCUCUGGCUGCUGGGCCGUGGGUUUUUCUCUUCUCCUGGGAGUAAGGAGGACGACGGCCCCUAACCCCUGAAUUAGCCUUCUAUUUCCAUUAGUGЖCUUAGAAGCUACCCGGCGCCUCAUCUGGGCUCACCUGAGCUGAGGAUCAGGAAGGGGAGGGGGCACAGUCAUUCCCUCGCGGACGCGGCGGGACCCCAGCGGACGGCUUUGUGCGGЖCUUUCGGCACCGUUAUGCCCCCCUAGCCCGACACCACCUGGGGCUGGCGCGCCACGUUACUGUUCAGGGCCAGACGCACCGCCCUGCCUGCUCCGGGGAGCCGGЖCCPCCGAUCCCGGGGAUGGGGGACCCCGAGACCUCAGЖCCCAACGGAGGGGЖCUCUGAUACCUCAGACCCCACGCGGGGACCCCGAGGCUUCAGACCCCCACAGGGUGACCCCGAGAUCUCAGACCCCCGCAGGAGUACCUCCAGACCUCAAAUCCCCAGUAAGGGAAUGAAAGAGЖCUUCGGAUCCCUGAGGCAGCAAAUCCCUGUAGGGGCAUCCCAGGЖCUCAGGUCACCGCGGGGUGAACCCAGACCUCACAUUCAGGCAAUCCCCAGGACGCCGAUCGGCUGGCACUACCCACUGUCCCGGCCACCCCCCCUGGAGCUCAAAGGCUUGGCCCUCCAGCUGCUCCACCCUGCCGGCAACCAGGCUCAAACCUGCAGCCCGCGGAUCCCCUGCCCCGGAAGCAACCAGAUUCGCGGGAGGUUACCUGACUGAUCCAAGGUGAUACAGCUGGUAACUGAUGGAGAUGUUGGUAGUGAAAUUCAUGUЖCUUUUAGUUCUUUCUAUGGAAUCUAGAGGUAGAAUACAUGUAAAAGAAUAUCGACUACCGUCUACUCAGGUCUCUGUUUUAUCUGUUUAUUCAUUCACUCUCAGCUUUUAAUAGGAUCCAAUGAGCCCUCUGUGGUUCUGAAGAAUUGCCUUGAGUAUAUGCAGCCUCAAAAAACCCACUUCCUAGGCUCAGUCUUUGAUCAAUAUUUAUCAUUAUCACCAGUUAUUGUUCUAAUAAACUCUACUCUGGAAAUAUGGUGUUAUGGUUUACUUGGGAGUGUGAGUUCAGGGCAUCAUUGAAGACUCACGUACUUUUACUGAGAAAGUGACAUUGAUCUCUGUAGAUUUUGAAUUAAAUGAUAUGAUGAAGUAUAUAAACCAAUUACUUUUGGUCAAGGUGGUAAAAAAAGUUUAGUAUUUGAUAGAUUCUUCAUCUCCACGAUCACAAAUAUUUUCUCCUAGGAUUUCUUCUAGAAAUAUUACUGCUUUAGGUUGUAUAUCAGGUCUAGGUUCUACUUUUUUUUUUUUUUUUCUCCAGGCAGUUUCUCACUCCGUUGCCCAGGCUGGAAUGCAGUGGUGUAAUCACAGCUCACUGCAGCCUCAACCUACUGGЖCUCAAAGGAUAAGAUCUGCUUUUAAUUAAUUUUUGUAUACGGUAUGGGAUAGGGACCAAAGUUCAUUUUUUUGCAUGUAUACAUAUCCAAAUGUUCCAGCAUCAUUUAUUAAAAAGUUAUUUUUGUCUCUACUGCA
Sequence (SHORT NAMES ENCODING)	GCGCCGCCGUCACCGCGCUCCGCUGAAUCCGCGUUUCCGGGAUUUCUCUGUAGGUGAGGCGGGAGGCUGGAGGGAGCUGAGCCCCCGGGGAGGGGGCCCGAUUCCGCCUCGCCGCGCCUCUGGCUGCUGGGCCGUGGGUUUUUCUCUUCUCCUGGGAGUAAGGAGGACGACGGCCCCUAACCCCUGAAUUAGCCUUCUAUUUCCAUUAGUGm6ACUUAGAAGCUACCCGGCGCCUCAUCUGGGCUCACCUGAGCUGAGGAUCAGGAAGGGGAGGGGGCACAGUCAUUCCCUCGCGGACGCGGCGGGACCCCAGCGGACGGCUUUGUGCGGm6ACUUUCGGCACCGUUAUGCCCCCCUAGCCCGACACCACCUGGGGCUGGCGCGCCACGUUACUGUUCAGGGCCAGACGCACCGCCCUGCCUGCUCCGGGGAGCCGGm6ACCYCCGAUCCCGGGGAUGGGGGACCCCGAGACCUCAGm6ACCCAACGGAGGGGm6ACUCUGAUACCUCAGACCCCACGCGGGGACCCCGAGGCUUCAGACCCCCACAGGGUGACCCCGAGAUCUCAGACCCCCGCAGGAGUACCUCCAGACCUCAAAUCCCCAGUAAGGGAAUGAAAGAGm6ACUUCGGAUCCCUGAGGCAGCAAAUCCCUGUAGGGGCAUCCCAGGm6ACUCAGGUCACCGCGGGGUGAACCCAGACCUCACAUUCAGGCAAUCCCCAGGACGCCGAUCGGCUGGCACUACCCACUGUCCCGGCCACCCCCCCUGGAGCUCAAAGGCUUGGCCCUCCAGCUGCUCCACCCUGCCGGCAACCAGGCUCAAACCUGCAGCCCGCGGAUCCCCUGCCCCGGAAGCAACCAGAUUCGCGGGAGGUUACCUGACUGAUCCAAGGUGAUACAGCUGGUAACUGAUGGAGAUGUUGGUAGUGAAAUUCAUGUm6ACUUUUAGUUCUUUCUAUGGAAUCUAGAGGUAGAAUACAUGUAAAAGAAUAUCGACUACCGUCUACUCAGGUCUCUGUUUUAUCUGUUUAUUCAUUCACUCUCAGCUUUUAAUAGGAUCCAAUGAGCCCUCUGUGGUUCUGAAGAAUUGCCUUGAGUAUAUGCAGCCUCAAAAAACCCACUUCCUAGGCUCAGUCUUUGAUCAAUAUUUAUCAUUAUCACCAGUUAUUGUUCUAAUAAACUCUACUCUGGAAAUAUGGUGUUAUGGUUUACUUGGGAGUGUGAGUUCAGGGCAUCAUUGAAGACUCACGUACUUUUACUGAGAAAGUGACAUUGAUCUCUGUAGAUUUUGAAUUAAAUGAUAUGAUGAAGUAUAUAAACCAAUUACUUUUGGUCAAGGUGGUAAAAAAAGUUUAGUAUUUGAUAGAUUCUUCAUCUCCACGAUCACAAAUAUUUUCUCCUAGGAUUUCUUCUAGAAAUAUUACUGCUUUAGGUUGUAUAUCAGGUCUAGGUUCUACUUUUUUUUUUUUUUUUCUCCAGGCAGUUUCUCACUCCGUUGCCCAGGCUGGAAUGCAGUGGUGUAAUCACAGCUCACUGCAGCCUCAACCUACUGGm6ACUCAAAGGAUAAGAUCUGCUUUUAAUUAAUUUUUGUAUACGGUAUGGGAUAGGGACCAAAGUUCAUUUUUUUGCAUGUAUACAUAUCCAAAUGUUCCAGCAUCAUUUAUUAAAAAGUUAUUUUUGUCUCUACUGCA
Sequence (MODOMICS CODE ENCODING)	GCGCCGCCGUCACCGCGCUCCGCUGAAUCCGCGUUUCCGGGAUUUCUCUGUAGGUGAGGCGGGAGGCUGGAGGGAGCUGAGCCCCCGGGGAGGGGGCCCGAUUCCGCCUCGCCGCGCCUCUGGCUGCUGGGCCGUGGGUUUUUCUCUUCUCCUGGGAGUAAGGAGGACGACGGCCCCUAACCCCUGAAUUAGCCUUCUAUUUCCAUUAGUG2000000006ACUUAGAAGCUACCCGGCGCCUCAUCUGGGCUCACCUGAGCUGAGGAUCAGGAAGGGGAGGGGGCACAGUCAUUCCCUCGCGGACGCGGCGGGACCCCAGCGGACGGCUUUGUGCGG2000000006ACUUUCGGCACCGUUAUGCCCCCCUAGCCCGACACCACCUGGGGCUGGCGCGCCACGUUACUGUUCAGGGCCAGACGCACCGCCCUGCCUGCUCCGGGGAGCCGG2000000006ACC2000000009UCCGAUCCCGGGGAUGGGGGACCCCGAGACCUCAG2000000006ACCCAACGGAGGGG2000000006ACUCUGAUACCUCAGACCCCACGCGGGGACCCCGAGGCUUCAGACCCCCACAGGGUGACCCCGAGAUCUCAGACCCCCGCAGGAGUACCUCCAGACCUCAAAUCCCCAGUAAGGGAAUGAAAGAG2000000006ACUUCGGAUCCCUGAGGCAGCAAAUCCCUGUAGGGGCAUCCCAGG2000000006ACUCAGGUCACCGCGGGGUGAACCCAGACCUCACAUUCAGGCAAUCCCCAGGACGCCGAUCGGCUGGCACUACCCACUGUCCCGGCCACCCCCCCUGGAGCUCAAAGGCUUGGCCCUCCAGCUGCUCCACCCUGCCGGCAACCAGGCUCAAACCUGCAGCCCGCGGAUCCCCUGCCCCGGAAGCAACCAGAUUCGCGGGAGGUUACCUGACUGAUCCAAGGUGAUACAGCUGGUAACUGAUGGAGAUGUUGGUAGUGAAAUUCAUGU2000000006ACUUUUAGUUCUUUCUAUGGAAUCUAGAGGUAGAAUACAUGUAAAAGAAUAUCGACUACCGUCUACUCAGGUCUCUGUUUUAUCUGUUUAUUCAUUCACUCUCAGCUUUUAAUAGGAUCCAAUGAGCCCUCUGUGGUUCUGAAGAAUUGCCUUGAGUAUAUGCAGCCUCAAAAAACCCACUUCCUAGGCUCAGUCUUUGAUCAAUAUUUAUCAUUAUCACCAGUUAUUGUUCUAAUAAACUCUACUCUGGAAAUAUGGUGUUAUGGUUUACUUGGGAGUGUGAGUUCAGGGCAUCAUUGAAGACUCACGUACUUUUACUGAGAAAGUGACAUUGAUCUCUGUAGAUUUUGAAUUAAAUGAUAUGAUGAAGUAUAUAAACCAAUUACUUUUGGUCAAGGUGGUAAAAAAAGUUUAGUAUUUGAUAGAUUCUUCAUCUCCACGAUCACAAAUAUUUUCUCCUAGGAUUUCUUCUAGAAAUAUUACUGCUUUAGGUUGUAUAUCAGGUCUAGGUUCUACUUUUUUUUUUUUUUUUCUCCAGGCAGUUUCUCACUCCGUUGCCCAGGCUGGAAUGCAGUGGUGUAAUCACAGCUCACUGCAGCCUCAACCUACUGG2000000006ACUCAAAGGAUAAGAUCUGCUUUUAAUUAAUUUUUGUAUACGGUAUGGGAUAGGGACCAAAGUUCAUUUUUUUGCAUGUAUACAUAUCCAAAUGUUCCAGCAUCAUUUAUUAAAAAGUUAUUUUUGUCUCUACUGCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	212	329	434	437	472	486	611	656	923	1535
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	8:6406369:-	8:6406252:-	8:6406147:-	8:6406144:-	8:6406109:-	8:6406095:-	8:6405970:-	8:6405925:-	8:6405658:-	8:6405046:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9