Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000521644
Gene ID: ENSG00000147475
Gene Name: ERLIN2
Sequence (UNICHARACTER ENCODING) GCCCCUUCGUGCGCGCGCUGGGCCUAGCUGCCGCUCAGGGUCGGGGCUGACCCGUCACUUUCGGGAACCUCAGUCCCAGCAGCUUCUCUCCCUCAGCCGGCCCGCUCCUGGAGAGAGACAGAAACCCUUUUCUGUCGCGUCCUCUCCUUGCGAGCCGCAGGGGGACCGAGCGGAGGCUAUUGGAGCCGCAGCCCCAGACCAGGGCGCUUGACCCUCUCUCGGAACGGGGCGGGGAAGGGGCGCGAGUGACCUCGGGGAGGGAAGGGCACUGGCAGGAAAGGACGCAACUGCAGAUCGGUAGCCGGAGGCCGCCACGGUAAAAUAAGCGCCUCGCAGAUGUCCGCGCCCCGGUUACGUUAGACCUGGGAGGCAGAAUCCACGCCCUGCGCUCACGGGCCCACGCACGCACAGCUGAACUUUGCAGUCAGUCACCAUAGUUCCAGAUCAUUCAGCGUUCAGGAUCCCACUCCUCCGCGUCCUGGUGCCUGAACGCGGUUGGACCUAGGAGCCUAGAGGCUCGCAGUUUGGGACAUUGCCUUUCUCUCUGACCACGGGCUUGGGGAUCUGUCAGGAUAAAGGCUCACUGAUGGCUCAGUUGGGAGCAGUUGUGGCUGUGGCUUCCAGUUUCUUUUGUGCAUCUCUCUUCUCAGCUGUGCACAAGAUAGAAGAGGGACAUAUUGGGGUAUAUUACAGAGGCGGUGCCCUGCUGACUUCGACCAGCGGCCCUGGUUUCCAUCUCAUGCUCCCUUUCAUCACAUCAUAUAAGUCUGUGCAGACCACACUCCAGACAGAUGAGGUGAAGAAUGUACCUUGUGGGACUAGUGGUGGUGUGAUGAUCUACUUUGACAGAAUUGAAGUGGUGAACUUCCUGGUCCCGAACGCAGUGUAUGAUAUAGUGAAGAACUAUACUGCUGACUAUGACAAGGCCCUCAUCUUCAACAAGAUCCACCACGAACUGAACCAGUUCUGCAGUGUGCACACGCUUCAAGAGGUCUACAUUGAGCUGUUUGAUCAGAUUGAUGAAAAUCUCAAACUGGCUUUGCAACAGGACCUGACCUCCAUGGCCCCUGGGCUGGUCAUUCAAGCUGUGCGGGUAACAAAGCCCAACAUACCAGAGGCAAUCCGCAGAAACUACGAGUUGAUGGAAAGUGAGAAGACAAAGCUUCUCAUUGCCGCCCAGAAACAGAAGGUGGUGGAAAAGGAAGCAGAGACAGAGCGGAAGAAGGCGCUCAUUGAGGCAGAAAAAGUGGCCCAGGUGGCUGAGAUCACCUACGGGCAGAAGGUGAUGGAGAAGGAGACUGAGAAGAAGAUUUCAGAAAUUGAAGAUGCUGCAUUUCUGGCCCGGGAGAAGGCAAAGGCAGAUGCUGAGUGCUACACUGCUAUGAAAAUAGCCGAAGCCAAUAAGCUGAAGCUAACCCCUGAAUAUCUGCAGCUGAUGAAGUACAAGGCCAUUGCUUCCAACAGCAAGAUUUACUUUGGCAAAGЖCAUUCCUAACAUGUUCAUGGЖCUCUGCGGGCAGUGUGAGCAAGCAGUUUGAGGGGCUAGCUGACAAGCUAAGCUUUGGCUUAGAAGAUGAACCCUUGGAGACGGCCACUAAGGAGAA
Sequence (SHORT NAMES ENCODING) GCCCCUUCGUGCGCGCGCUGGGCCUAGCUGCCGCUCAGGGUCGGGGCUGACCCGUCACUUUCGGGAACCUCAGUCCCAGCAGCUUCUCUCCCUCAGCCGGCCCGCUCCUGGAGAGAGACAGAAACCCUUUUCUGUCGCGUCCUCUCCUUGCGAGCCGCAGGGGGACCGAGCGGAGGCUAUUGGAGCCGCAGCCCCAGACCAGGGCGCUUGACCCUCUCUCGGAACGGGGCGGGGAAGGGGCGCGAGUGACCUCGGGGAGGGAAGGGCACUGGCAGGAAAGGACGCAACUGCAGAUCGGUAGCCGGAGGCCGCCACGGUAAAAUAAGCGCCUCGCAGAUGUCCGCGCCCCGGUUACGUUAGACCUGGGAGGCAGAAUCCACGCCCUGCGCUCACGGGCCCACGCACGCACAGCUGAACUUUGCAGUCAGUCACCAUAGUUCCAGAUCAUUCAGCGUUCAGGAUCCCACUCCUCCGCGUCCUGGUGCCUGAACGCGGUUGGACCUAGGAGCCUAGAGGCUCGCAGUUUGGGACAUUGCCUUUCUCUCUGACCACGGGCUUGGGGAUCUGUCAGGAUAAAGGCUCACUGAUGGCUCAGUUGGGAGCAGUUGUGGCUGUGGCUUCCAGUUUCUUUUGUGCAUCUCUCUUCUCAGCUGUGCACAAGAUAGAAGAGGGACAUAUUGGGGUAUAUUACAGAGGCGGUGCCCUGCUGACUUCGACCAGCGGCCCUGGUUUCCAUCUCAUGCUCCCUUUCAUCACAUCAUAUAAGUCUGUGCAGACCACACUCCAGACAGAUGAGGUGAAGAAUGUACCUUGUGGGACUAGUGGUGGUGUGAUGAUCUACUUUGACAGAAUUGAAGUGGUGAACUUCCUGGUCCCGAACGCAGUGUAUGAUAUAGUGAAGAACUAUACUGCUGACUAUGACAAGGCCCUCAUCUUCAACAAGAUCCACCACGAACUGAACCAGUUCUGCAGUGUGCACACGCUUCAAGAGGUCUACAUUGAGCUGUUUGAUCAGAUUGAUGAAAAUCUCAAACUGGCUUUGCAACAGGACCUGACCUCCAUGGCCCCUGGGCUGGUCAUUCAAGCUGUGCGGGUAACAAAGCCCAACAUACCAGAGGCAAUCCGCAGAAACUACGAGUUGAUGGAAAGUGAGAAGACAAAGCUUCUCAUUGCCGCCCAGAAACAGAAGGUGGUGGAAAAGGAAGCAGAGACAGAGCGGAAGAAGGCGCUCAUUGAGGCAGAAAAAGUGGCCCAGGUGGCUGAGAUCACCUACGGGCAGAAGGUGAUGGAGAAGGAGACUGAGAAGAAGAUUUCAGAAAUUGAAGAUGCUGCAUUUCUGGCCCGGGAGAAGGCAAAGGCAGAUGCUGAGUGCUACACUGCUAUGAAAAUAGCCGAAGCCAAUAAGCUGAAGCUAACCCCUGAAUAUCUGCAGCUGAUGAAGUACAAGGCCAUUGCUUCCAACAGCAAGAUUUACUUUGGCAAAGm6ACAUUCCUAACAUGUUCAUGGm6ACUCUGCGGGCAGUGUGAGCAAGCAGUUUGAGGGGCUAGCUGACAAGCUAAGCUUUGGCUUAGAAGAUGAACCCUUGGAGACGGCCACUAAGGAGAA
Sequence (MODOMICS CODE ENCODING) GCCCCUUCGUGCGCGCGCUGGGCCUAGCUGCCGCUCAGGGUCGGGGCUGACCCGUCACUUUCGGGAACCUCAGUCCCAGCAGCUUCUCUCCCUCAGCCGGCCCGCUCCUGGAGAGAGACAGAAACCCUUUUCUGUCGCGUCCUCUCCUUGCGAGCCGCAGGGGGACCGAGCGGAGGCUAUUGGAGCCGCAGCCCCAGACCAGGGCGCUUGACCCUCUCUCGGAACGGGGCGGGGAAGGGGCGCGAGUGACCUCGGGGAGGGAAGGGCACUGGCAGGAAAGGACGCAACUGCAGAUCGGUAGCCGGAGGCCGCCACGGUAAAAUAAGCGCCUCGCAGAUGUCCGCGCCCCGGUUACGUUAGACCUGGGAGGCAGAAUCCACGCCCUGCGCUCACGGGCCCACGCACGCACAGCUGAACUUUGCAGUCAGUCACCAUAGUUCCAGAUCAUUCAGCGUUCAGGAUCCCACUCCUCCGCGUCCUGGUGCCUGAACGCGGUUGGACCUAGGAGCCUAGAGGCUCGCAGUUUGGGACAUUGCCUUUCUCUCUGACCACGGGCUUGGGGAUCUGUCAGGAUAAAGGCUCACUGAUGGCUCAGUUGGGAGCAGUUGUGGCUGUGGCUUCCAGUUUCUUUUGUGCAUCUCUCUUCUCAGCUGUGCACAAGAUAGAAGAGGGACAUAUUGGGGUAUAUUACAGAGGCGGUGCCCUGCUGACUUCGACCAGCGGCCCUGGUUUCCAUCUCAUGCUCCCUUUCAUCACAUCAUAUAAGUCUGUGCAGACCACACUCCAGACAGAUGAGGUGAAGAAUGUACCUUGUGGGACUAGUGGUGGUGUGAUGAUCUACUUUGACAGAAUUGAAGUGGUGAACUUCCUGGUCCCGAACGCAGUGUAUGAUAUAGUGAAGAACUAUACUGCUGACUAUGACAAGGCCCUCAUCUUCAACAAGAUCCACCACGAACUGAACCAGUUCUGCAGUGUGCACACGCUUCAAGAGGUCUACAUUGAGCUGUUUGAUCAGAUUGAUGAAAAUCUCAAACUGGCUUUGCAACAGGACCUGACCUCCAUGGCCCCUGGGCUGGUCAUUCAAGCUGUGCGGGUAACAAAGCCCAACAUACCAGAGGCAAUCCGCAGAAACUACGAGUUGAUGGAAAGUGAGAAGACAAAGCUUCUCAUUGCCGCCCAGAAACAGAAGGUGGUGGAAAAGGAAGCAGAGACAGAGCGGAAGAAGGCGCUCAUUGAGGCAGAAAAAGUGGCCCAGGUGGCUGAGAUCACCUACGGGCAGAAGGUGAUGGAGAAGGAGACUGAGAAGAAGAUUUCAGAAAUUGAAGAUGCUGCAUUUCUGGCCCGGGAGAAGGCAAAGGCAGAUGCUGAGUGCUACACUGCUAUGAAAAUAGCCGAAGCCAAUAAGCUGAAGCUAACCCCUGAAUAUCUGCAGCUGAUGAAGUACAAGGCCAUUGCUUCCAACAGCAAGAUUUACUUUGGCAAAG2000000006ACAUUCCUAACAUGUUCAUGG2000000006ACUCUGCGGGCAGUGUGAGCAAGCAGUUUGAGGGGCUAGCUGACAAGCUAAGCUUUGGCUUAGAAGAUGAACCCUUGGAGACGGCCACUAAGGAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1485 1506
Modification Positions m6A m6A
Genomic Coordinates 8:37753994:+ 8:37754015:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
KTLz8piFYdwC
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
KTLz8piFYdwC
nfCHyrYzE6fB
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
Yfn77uLS5tv8