Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000523761
Gene ID: ENSG00000133872
Gene Name: SARAF
Sequence (UNICHARACTER ENCODING) GCAGUCGGGCCGUUCCUUCGCCGCCGCCAGGGGUAGCGGUGUAGCUGCGCAGCGUCGCGCGCGCUACCGCACCCAGGUUCGGCCCGUЖGGCGUCUGGCAGCCCGGCGCCAUCUUCAUCGAGCGCCAUGGCCGCAGCCUGCGGGCCGGGAGCGGCCGGGUACUGCUUGCUCCUCGGCUUGCAUUUGUUUCUGCUGACCGCGGGCCCUGCCCUGGGCUGGAACGACCCUGCUCUUACCCUCCACUAUGACCGCUAUACCACCPCCCGCAGGCUGGAUCCCAPCCCACAGUUGAAAUGUGUUGGAGGCACAGCUGGUUGUGAUUCUUAUACCCCAAAAGUCAUACAGUGUCAGAACAAAGGCUGGGAUGGGUAUGAUGUACAGUGGGAAUGUAAGACGGЖCUUAGAUAUUGCAUACЖAAUUUGGAAAAЖCUGUGGUGAGCUGUGAAGGCUAUGAGUCCUCUGAAGACCAGUAUGUACUAAGAGGUUCUUGUGGCUUGGAGUAUAAUUUAGAUUAUACAGAЖCUUGGCCUGCAGAAЖCUGAAGGAGUCUGGAAAGCAGCACGGCUUUGCC
Sequence (SHORT NAMES ENCODING) GCAGUCGGGCCGUUCCUUCGCCGCCGCCAGGGGUAGCGGUGUAGCUGCGCAGCGUCGCGCGCGCUACCGCACCCAGGUUCGGCCCGUm6AGGCGUCUGGCAGCCCGGCGCCAUCUUCAUCGAGCGCCAUGGCCGCAGCCUGCGGGCCGGGAGCGGCCGGGUACUGCUUGCUCCUCGGCUUGCAUUUGUUUCUGCUGACCGCGGGCCCUGCCCUGGGCUGGAACGACCCUGCUCUUACCCUCCACUAUGACCGCUAUACCACCYCCCGCAGGCUGGAUCCCAYCCCACAGUUGAAAUGUGUUGGAGGCACAGCUGGUUGUGAUUCUUAUACCCCAAAAGUCAUACAGUGUCAGAACAAAGGCUGGGAUGGGUAUGAUGUACAGUGGGAAUGUAAGACGGm6ACUUAGAUAUUGCAUACm6AAAUUUGGAAAAm6ACUGUGGUGAGCUGUGAAGGCUAUGAGUCCUCUGAAGACCAGUAUGUACUAAGAGGUUCUUGUGGCUUGGAGUAUAAUUUAGAUUAUACAGAm6ACUUGGCCUGCAGAAm6ACUGAAGGAGUCUGGAAAGCAGCACGGCUUUGCC
Sequence (MODOMICS CODE ENCODING) GCAGUCGGGCCGUUCCUUCGCCGCCGCCAGGGGUAGCGGUGUAGCUGCGCAGCGUCGCGCGCGCUACCGCACCCAGGUUCGGCCCGU2000000006AGGCGUCUGGCAGCCCGGCGCCAUCUUCAUCGAGCGCCAUGGCCGCAGCCUGCGGGCCGGGAGCGGCCGGGUACUGCUUGCUCCUCGGCUUGCAUUUGUUUCUGCUGACCGCGGGCCCUGCCCUGGGCUGGAACGACCCUGCUCUUACCCUCCACUAUGACCGCUAUACCACC2000000009UCCCGCAGGCUGGAUCCCA2000000009UCCCACAGUUGAAAUGUGUUGGAGGCACAGCUGGUUGUGAUUCUUAUACCCCAAAAGUCAUACAGUGUCAGAACAAAGGCUGGGAUGGGUAUGAUGUACAGUGGGAAUGUAAGACGG2000000006ACUUAGAUAUUGCAUAC2000000006AAAUUUGGAAAA2000000006ACUGUGGUGAGCUGUGAAGGCUAUGAGUCCUCUGAAGACCAGUAUGUACUAAGAGGUUCUUGUGGCUUGGAGUAUAAUUUAGAUUAUACAGA2000000006ACUUGGCCUGCAGAA2000000006ACUGAAGGAGUCUGGAAAGCAGCACGGCUUUGCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 88 261 280 397 414 426 518 533
Modification Positions m6A Y Y m6A m6A m6A m6A m6A
Genomic Coordinates 8:30082987:- 8:30073996:- 8:30073977:- 8:30070043:- 8:30070026:- 8:30070014:- 8:30069922:- 8:30069907:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
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dknfVe6BK8aP
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iezFbUdmY3A6
S9vNeQQYrhac
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BtsJQJ3DteUq
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dknfVe6BK8aP
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Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
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6AyXsheySjfx
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aivdrAsbdKEU
Ap2q43bQLNek
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UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8