Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000529505
Gene ID: ENSG00000176209
Gene Name: SMIM19
Sequence (UNICHARACTER ENCODING) GAGCGGAGCAGCGCUGGCCGCGUGCCGCCUCCGGAGCCGGCAGCGUGAGUGGCCCCGCGUCCCCGCUUCUCCCGGUCCCCGGCGGGGCCGCGUCACCCGGCCCCGCCCCGCGCCGCCCGCCCCGCCCCGGACGCGGGGGUAAGGGGGGUGGCCGCCCGCCUGCCCUCGGUCCCGUGCGGUCCCCGAAACUCCGAGCACCCGCCCGGUCCCGGCGCGGAGCCCCUCGGCGUCGCGUGGAGCUGCGAGUCGCCCGCUUCCGGAAGCGCACACGGGCCAGUUGCGGCGGCCCAUCUGCCGGGGCGGCGGGGGCUCGGCGGGAGGGUUGAGGCUGAAUCACGCGCAGCCUGCGGGCGGCGGAAACGUCCCUAGAGCCUCGCCGCCCUGGGACCCGGGCUGCUUCCUGGGAGAGGAUUACAUUUUCUCCCUGCUCCACUUGЖCUUUCUUCCGGAAGGAGCAGGUCUCGCAGGAUCGGGGCCAAGЖCUGGAAGAGUUCAGGUUUGGGAGUCGUGUGUAUAACAGCCCCGCGCCUCCACGCCCAGGCCUGUGUGGCUUUGGЖCAAGUUAUAUAACCACCGCCGCCACCCCAGUUUCUUCUCCUGUAAAAUGGAGCUUUAGUGCCGCCCAGCAGGGUUGUUGGGAUAAUUCAGUGЖCUCUGUGGЖCUGCCCAGCACCUGUGAAUUGCUUUCCUGGAUGUUGGGUGAAGGCCUGUGAGCUUCCCCAUGGCUGGGGGUUAUGGAGUGAUGGGUGACGAUGGUUCUAUUGAUUAUACUGUUCACGAAGCCUGGAAUGAAGCCACCAAUGUUUACUUGAUAGUUAUCCUUGUUAGCUUCGGUCUCUUCAUGUAUGCCAAAAGGAUAUUUGGCUUUUGGAGGAUUGAGGAGAAUCACAAUGGAGGAACUUCACUUUGUUGUGUUAAAUGGAUG
Sequence (SHORT NAMES ENCODING) GAGCGGAGCAGCGCUGGCCGCGUGCCGCCUCCGGAGCCGGCAGCGUGAGUGGCCCCGCGUCCCCGCUUCUCCCGGUCCCCGGCGGGGCCGCGUCACCCGGCCCCGCCCCGCGCCGCCCGCCCCGCCCCGGACGCGGGGGUAAGGGGGGUGGCCGCCCGCCUGCCCUCGGUCCCGUGCGGUCCCCGAAACUCCGAGCACCCGCCCGGUCCCGGCGCGGAGCCCCUCGGCGUCGCGUGGAGCUGCGAGUCGCCCGCUUCCGGAAGCGCACACGGGCCAGUUGCGGCGGCCCAUCUGCCGGGGCGGCGGGGGCUCGGCGGGAGGGUUGAGGCUGAAUCACGCGCAGCCUGCGGGCGGCGGAAACGUCCCUAGAGCCUCGCCGCCCUGGGACCCGGGCUGCUUCCUGGGAGAGGAUUACAUUUUCUCCCUGCUCCACUUGm6ACUUUCUUCCGGAAGGAGCAGGUCUCGCAGGAUCGGGGCCAAGm6ACUGGAAGAGUUCAGGUUUGGGAGUCGUGUGUAUAACAGCCCCGCGCCUCCACGCCCAGGCCUGUGUGGCUUUGGm6ACAAGUUAUAUAACCACCGCCGCCACCCCAGUUUCUUCUCCUGUAAAAUGGAGCUUUAGUGCCGCCCAGCAGGGUUGUUGGGAUAAUUCAGUGm6ACUCUGUGGm6ACUGCCCAGCACCUGUGAAUUGCUUUCCUGGAUGUUGGGUGAAGGCCUGUGAGCUUCCCCAUGGCUGGGGGUUAUGGAGUGAUGGGUGACGAUGGUUCUAUUGAUUAUACUGUUCACGAAGCCUGGAAUGAAGCCACCAAUGUUUACUUGAUAGUUAUCCUUGUUAGCUUCGGUCUCUUCAUGUAUGCCAAAAGGAUAUUUGGCUUUUGGAGGAUUGAGGAGAAUCACAAUGGAGGAACUUCACUUUGUUGUGUUAAAUGGAUG
Sequence (MODOMICS CODE ENCODING) GAGCGGAGCAGCGCUGGCCGCGUGCCGCCUCCGGAGCCGGCAGCGUGAGUGGCCCCGCGUCCCCGCUUCUCCCGGUCCCCGGCGGGGCCGCGUCACCCGGCCCCGCCCCGCGCCGCCCGCCCCGCCCCGGACGCGGGGGUAAGGGGGGUGGCCGCCCGCCUGCCCUCGGUCCCGUGCGGUCCCCGAAACUCCGAGCACCCGCCCGGUCCCGGCGCGGAGCCCCUCGGCGUCGCGUGGAGCUGCGAGUCGCCCGCUUCCGGAAGCGCACACGGGCCAGUUGCGGCGGCCCAUCUGCCGGGGCGGCGGGGGCUCGGCGGGAGGGUUGAGGCUGAAUCACGCGCAGCCUGCGGGCGGCGGAAACGUCCCUAGAGCCUCGCCGCCCUGGGACCCGGGCUGCUUCCUGGGAGAGGAUUACAUUUUCUCCCUGCUCCACUUG2000000006ACUUUCUUCCGGAAGGAGCAGGUCUCGCAGGAUCGGGGCCAAG2000000006ACUGGAAGAGUUCAGGUUUGGGAGUCGUGUGUAUAACAGCCCCGCGCCUCCACGCCCAGGCCUGUGUGGCUUUGG2000000006ACAAGUUAUAUAACCACCGCCGCCACCCCAGUUUCUUCUCCUGUAAAAUGGAGCUUUAGUGCCGCCCAGCAGGGUUGUUGGGAUAAUUCAGUG2000000006ACUCUGUGG2000000006ACUGCCCAGCACCUGUGAAUUGCUUUCCUGGAUGUUGGGUGAAGGCCUGUGAGCUUCCCCAUGGCUGGGGGUUAUGGAGUGAUGGGUGACGAUGGUUCUAUUGAUUAUACUGUUCACGAAGCCUGGAAUGAAGCCACCAAUGUUUACUUGAUAGUUAUCCUUGUUAGCUUCGGUCUCUUCAUGUAUGCCAAAAGGAUAUUUGGCUUUUGGAGGAUUGAGGAGAAUCACAAUGGAGGAACUUCACUUUGUUGUGUUAAAUGGAUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 437 480 555 648 657
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 8:42542098:+ 8:42542141:+ 8:42542216:+ 8:42542309:+ 8:42542318:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML