Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000221138
Gene ID: ENSG00000104695
Gene Name: PPP2CB
Sequence (UNICHARACTER ENCODING) GAGAGAAGGGGAAAGACAAGUCGGGAGAGGCCGGUAGGCGUGAGGCGGGCCUGAAGCGGCAGCGGGCGGCCUUCGUCCGGCGAGAGCUAGGCCGAGGACCCGCGCCGCGCUCCCCGGCACCUCACCGCGUCCUUCACCGACUCCCGCGGCGCGCGGCCGGGCGGGGAAGGGCGGGCGGGGGUCUCCPCCAGGCUGCGCGCUCGGAGCCGCCUGCUGGGCUUGGGCGGGGCGCGGGGCCCGCGGCCGCCCUACCCGGCUCAGUCCUCCCCCUGUGGGACCUGGCGACGGCGGCGGAGGGAGAGGGGAGCGGCGCCCGGGCCGGGGCCGGGGGCGGGUGGGGAGGGGGGAGGGCGGCGGCCGGGCUGGGGCUCGGGAUCCGCAUCGGGAUCGGGCCGCCAUGGACGACAAGGCGUUCACCAAGGAGCUGGACCAGUGGGUCGAGCAGCUGAACGAGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACGCUGUGCGAGAAGGCAAAGGAAAUUUUAACAAAAGAAUCAAAUGUGCAAGAGGUUCGUUGCCCUGUUACUGUCUGUGGAGAUGUGCAUGGUCAAUUUCAUGAUCUUAUGGAACUCUPUAGAAUUGGUGGAAAAUCACCGGAUACЖAACUACUUAUUCAUGGGUGACUAUGUAGACAGAGGAUAUUAUUCAGUGGAGACUGUGACUCUUCUUGUAGCAUUAAAGGUGCGUUAUCCAGAACGCAUUACAAUAUUGAGAGGAAAUCACGAAAGCCGACAAAUUACCCAAGUAUAUGGCUUUUAUGAUGAAUGUCUGCGAAAGUAUGGGAAUGCCAACGUUUGGAAAUAUUUUACЖGAUCUCUUUGAUUAUCUUCCACUUACAGCUPUAGUAGAUGGACAGAUAUUCUGCCUCCAUGGUGGCCUCUCUCCAUCCAUAGЖCACACUGGAUCAUAPAAGAGCCCUGGAUCGUUUACЖGGAAGUUCCACAUGAGGGCCCAAUGUGUGAUCUGUUAUGGUCAGAUCCAGAUGAUCGUGGUGGAUGGGGUAUUUCACCACGUGGUGCUGGCUACACAUUUGGACAAGACAUUUCUGAAACCUPUAACCAUGCCAAUGGUCUCACACUGGUUUCUCGUGCCCACCAGCUUGUAAUGGAGGGAUACAAUUGGUGUCAUGAUCGGAAUGUGGUUACCAUUUUCAGUGCACCCAAUUACUGUUAUCGUUGUGGGAACCAGGCUGCUAUCAUGGAAUUAGAUGACACUPUAAAAUAUUCCUUCCUUCAAUPUGACCCAGCGCCUCGUCGUGGUGAGCCUCAUGUUACACGGCGCACCCCAGACUACUUCCUAUAAAUUUCUCCUGGGAAACCUGCCUUUGUAUGUGGAAGUAUACCUGGCUUUUUAAAAUAUAUGUAUUUAAAAACAAAAAGCAACAGUAAUCUAUGUGUUUCUGUAACAAAUUGGGAUCUGUCUUGGCAUUAAЖCCACAUCAUGGACCAAAUGUGCCAUACUAAUGAUGAGCAUUUAGCACAAUUUGAGACUGAAAUUUAGUACACUAUGUUCUAGGUCAGUCUAACAGUUUGCCUGCUGUAUUUAUAGUAACCAUUUUCCUUUGGЖCUGUUCAAGCAAAAAAGGUAЖCUAACUGCUUCAUCUCCUUUUGCGCUUAUUUGGAAAUUUUAGUUAUAGUGUUUAACUGGCAUGGAUUAAUAGAGUUGGAGUUUUAUUUUUAAGAAAAAUUCACAAGCUAЖCUUCCACUAAUCCAUUAUCCUPUAUUUUAUUGAAAUGUAUAAUUЖЖCUUAACUGAAGAAAAGGUUCUUCUUGGGAGUAUGUUGUCAUAЖCAUUUAAAGAGAUUUCCCUUCAUUUAAACUAAAUUACUGUUUUAUGUUGAUCUGCAUAUUUCUGUAUAUUUGUCAUGACAGUGCUUGCAPCCUAUUUGGUGUACUCAGCAAAUAAACUUUUCAUUUUAAЖCAAAAA
Sequence (SHORT NAMES ENCODING) GAGAGAAGGGGAAAGACAAGUCGGGAGAGGCCGGUAGGCGUGAGGCGGGCCUGAAGCGGCAGCGGGCGGCCUUCGUCCGGCGAGAGCUAGGCCGAGGACCCGCGCCGCGCUCCCCGGCACCUCACCGCGUCCUUCACCGACUCCCGCGGCGCGCGGCCGGGCGGGGAAGGGCGGGCGGGGGUCUCCYCCAGGCUGCGCGCUCGGAGCCGCCUGCUGGGCUUGGGCGGGGCGCGGGGCCCGCGGCCGCCCUACCCGGCUCAGUCCUCCCCCUGUGGGACCUGGCGACGGCGGCGGAGGGAGAGGGGAGCGGCGCCCGGGCCGGGGCCGGGGGCGGGUGGGGAGGGGGGAGGGCGGCGGCCGGGCUGGGGCUCGGGAUCCGCAUCGGGAUCGGGCCGCCAUGGACGACAAGGCGUUCACCAAGGAGCUGGACCAGUGGGUCGAGCAGCUGAACGAGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACGCUGUGCGAGAAGGCAAAGGAAAUUUUAACAAAAGAAUCAAAUGUGCAAGAGGUUCGUUGCCCUGUUACUGUCUGUGGAGAUGUGCAUGGUCAAUUUCAUGAUCUUAUGGAACUCUYUAGAAUUGGUGGAAAAUCACCGGAUACm6AAACUACUUAUUCAUGGGUGACUAUGUAGACAGAGGAUAUUAUUCAGUGGAGACUGUGACUCUUCUUGUAGCAUUAAAGGUGCGUUAUCCAGAACGCAUUACAAUAUUGAGAGGAAAUCACGAAAGCCGACAAAUUACCCAAGUAUAUGGCUUUUAUGAUGAAUGUCUGCGAAAGUAUGGGAAUGCCAACGUUUGGAAAUAUUUUACm6AGAUCUCUUUGAUUAUCUUCCACUUACAGCUYUAGUAGAUGGACAGAUAUUCUGCCUCCAUGGUGGCCUCUCUCCAUCCAUAGm6ACACACUGGAUCAUAYAAGAGCCCUGGAUCGUUUACm6AGGAAGUUCCACAUGAGGGCCCAAUGUGUGAUCUGUUAUGGUCAGAUCCAGAUGAUCGUGGUGGAUGGGGUAUUUCACCACGUGGUGCUGGCUACACAUUUGGACAAGACAUUUCUGAAACCUYUAACCAUGCCAAUGGUCUCACACUGGUUUCUCGUGCCCACCAGCUUGUAAUGGAGGGAUACAAUUGGUGUCAUGAUCGGAAUGUGGUUACCAUUUUCAGUGCACCCAAUUACUGUUAUCGUUGUGGGAACCAGGCUGCUAUCAUGGAAUUAGAUGACACUYUAAAAUAUUCCUUCCUUCAAUYUGACCCAGCGCCUCGUCGUGGUGAGCCUCAUGUUACACGGCGCACCCCAGACUACUUCCUAUAAAUUUCUCCUGGGAAACCUGCCUUUGUAUGUGGAAGUAUACCUGGCUUUUUAAAAUAUAUGUAUUUAAAAACAAAAAGCAACAGUAAUCUAUGUGUUUCUGUAACAAAUUGGGAUCUGUCUUGGCAUUAAm6ACCACAUCAUGGACCAAAUGUGCCAUACUAAUGAUGAGCAUUUAGCACAAUUUGAGACUGAAAUUUAGUACACUAUGUUCUAGGUCAGUCUAACAGUUUGCCUGCUGUAUUUAUAGUAACCAUUUUCCUUUGGm6ACUGUUCAAGCAAAAAAGGUAm6ACUAACUGCUUCAUCUCCUUUUGCGCUUAUUUGGAAAUUUUAGUUAUAGUGUUUAACUGGCAUGGAUUAAUAGAGUUGGAGUUUUAUUUUUAAGAAAAAUUCACAAGCUAm6ACUUCCACUAAUCCAUUAUCCUYUAUUUUAUUGAAAUGUAUAAUUm6Am6ACUUAACUGAAGAAAAGGUUCUUCUUGGGAGUAUGUUGUCAUAm6ACAUUUAAAGAGAUUUCCCUUCAUUUAAACUAAAUUACUGUUUUAUGUUGAUCUGCAUAUUUCUGUAUAUUUGUCAUGACAGUGCUUGCAYCCUAUUUGGUGUACUCAGCAAAUAAACUUUUCAUUUUAAm6ACAAAAA
Sequence (MODOMICS CODE ENCODING) GAGAGAAGGGGAAAGACAAGUCGGGAGAGGCCGGUAGGCGUGAGGCGGGCCUGAAGCGGCAGCGGGCGGCCUUCGUCCGGCGAGAGCUAGGCCGAGGACCCGCGCCGCGCUCCCCGGCACCUCACCGCGUCCUUCACCGACUCCCGCGGCGCGCGGCCGGGCGGGGAAGGGCGGGCGGGGGUCUCC2000000009UCCAGGCUGCGCGCUCGGAGCCGCCUGCUGGGCUUGGGCGGGGCGCGGGGCCCGCGGCCGCCCUACCCGGCUCAGUCCUCCCCCUGUGGGACCUGGCGACGGCGGCGGAGGGAGAGGGGAGCGGCGCCCGGGCCGGGGCCGGGGGCGGGUGGGGAGGGGGGAGGGCGGCGGCCGGGCUGGGGCUCGGGAUCCGCAUCGGGAUCGGGCCGCCAUGGACGACAAGGCGUUCACCAAGGAGCUGGACCAGUGGGUCGAGCAGCUGAACGAGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACGCUGUGCGAGAAGGCAAAGGAAAUUUUAACAAAAGAAUCAAAUGUGCAAGAGGUUCGUUGCCCUGUUACUGUCUGUGGAGAUGUGCAUGGUCAAUUUCAUGAUCUUAUGGAACUCU2000000009UUAGAAUUGGUGGAAAAUCACCGGAUAC2000000006AAACUACUUAUUCAUGGGUGACUAUGUAGACAGAGGAUAUUAUUCAGUGGAGACUGUGACUCUUCUUGUAGCAUUAAAGGUGCGUUAUCCAGAACGCAUUACAAUAUUGAGAGGAAAUCACGAAAGCCGACAAAUUACCCAAGUAUAUGGCUUUUAUGAUGAAUGUCUGCGAAAGUAUGGGAAUGCCAACGUUUGGAAAUAUUUUAC2000000006AGAUCUCUUUGAUUAUCUUCCACUUACAGCU2000000009UUAGUAGAUGGACAGAUAUUCUGCCUCCAUGGUGGCCUCUCUCCAUCCAUAG2000000006ACACACUGGAUCAUA2000000009UAAGAGCCCUGGAUCGUUUAC2000000006AGGAAGUUCCACAUGAGGGCCCAAUGUGUGAUCUGUUAUGGUCAGAUCCAGAUGAUCGUGGUGGAUGGGGUAUUUCACCACGUGGUGCUGGCUACACAUUUGGACAAGACAUUUCUGAAACCU2000000009UUAACCAUGCCAAUGGUCUCACACUGGUUUCUCGUGCCCACCAGCUUGUAAUGGAGGGAUACAAUUGGUGUCAUGAUCGGAAUGUGGUUACCAUUUUCAGUGCACCCAAUUACUGUUAUCGUUGUGGGAACCAGGCUGCUAUCAUGGAAUUAGAUGACACU2000000009UUAAAAUAUUCCUUCCUUCAAU2000000009UUGACCCAGCGCCUCGUCGUGGUGAGCCUCAUGUUACACGGCGCACCCCAGACUACUUCCUAUAAAUUUCUCCUGGGAAACCUGCCUUUGUAUGUGGAAGUAUACCUGGCUUUUUAAAAUAUAUGUAUUUAAAAACAAAAAGCAACAGUAAUCUAUGUGUUUCUGUAACAAAUUGGGAUCUGUCUUGGCAUUAA2000000006ACCACAUCAUGGACCAAAUGUGCCAUACUAAUGAUGAGCAUUUAGCACAAUUUGAGACUGAAAUUUAGUACACUAUGUUCUAGGUCAGUCUAACAGUUUGCCUGCUGUAUUUAUAGUAACCAUUUUCCUUUGG2000000006ACUGUUCAAGCAAAAAAGGUA2000000006ACUAACUGCUUCAUCUCCUUUUGCGCUUAUUUGGAAAUUUUAGUUAUAGUGUUUAACUGGCAUGGAUUAAUAGAGUUGGAGUUUUAUUUUUAAGAAAAAUUCACAAGCUA2000000006ACUUCCACUAAUCCAUUAUCCU2000000009UUAUUUUAUUGAAAUGUAUAAUU2000000006A2000000006ACUUAACUGAAGAAAAGGUUCUUCUUGGGAGUAUGUUGUCAUA2000000006ACAUUUAAAGAGAUUUCCCUUCAUUUAAACUAAAUUACUGUUUUAUGUUGAUCUGCAUAUUUCUGUAUAUUUGUCAUGACAGUGCUUGCA2000000009UCCUAUUUGGUGUACUCAGCAAAUAAACUUUUCAUUUUAA2000000006ACAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 187 603 631 838 869 921 936 957 1080 1241 1263 1457 1590 1611 1721 1743 1766 1767 1810 1900 1940
Modification Positions Y Y m6A m6A Y m6A Y m6A Y Y Y m6A m6A m6A m6A Y m6A m6A m6A Y m6A
Genomic Coordinates 8:30812632:- 8:30799652:- 8:30799624:- 8:30797626:- 8:30797595:- 8:30794244:- 8:30794229:- 8:30794208:- 8:30793972:- 8:30791210:- 8:30786299:- 8:30786105:- 8:30785972:- 8:30785951:- 8:30785841:- 8:30785819:- 8:30785796:- 8:30785795:- 8:30785752:- 8:30785662:- 8:30785622:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
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