Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000527653
Gene ID: ENSG00000197858
Gene Name: GPAA1
Sequence (UNICHARACTER ENCODING) CUACAGGCAUGCAGUCGUCUCCCCUGCAGGGCCGAGCUGGGGCCAUUCAGGCAGCCGUGGCCCUGGAGCUGAGCAGUGAUGUGGUCACCAGCCUCGAUGUGGCCGUGGAGGGGCUUAACGGGCAGCUGCCCAACCUUGACCUGCUCЖAUCUCUUCCAGACCUUCUGCCAGAAAGGGGGCCUGUUGUGCACGCUUCAGGGCAAGGUGGGGCUGCCUGCCUGCCUGAGGGCUGAAGGGCACAGGGUCUGUGGGAGGGGCUGUCUCAUCCUGUCCUGCACCUCUAAAGCUGCAGCCCGAGGACUGGACAUCAUUGGAUGGACCGCUGCAGGGCCUGCAGACACUGCUGCUCAUGGUUCUGCGGCAGGCCUCCGGCCGCCCCCACGGCUCCCAUGGCCUCUUCCUGCGCUACCGUGUGGAGGCCCUAACCCUGCGUGGCAUCAAUAGCUUCCGCCAGUACAAGUAUGACCUGGUGGCAGUGGGCAAGGCUUUGGAGGGCAUGUUCCGCAAGCUCAACCACCPCCUGGAGCGCCUGCACCAGUCCUUCUUCCUCUACUUGCUCCCCGGCCUCUCCCGCUUCGUCUCCAUCGGCCUCUACAUGCCCGCUGUCGGCUUCUUGCUCCUGGUCCUUGGUCUCAAGAUAUCCUCUGCCCCUUGCCAUCUACCUGUGACCAGCCUCCAGUCUCCUCAACUCUAGGCUGGGGAGAGUCUUCCAUCCUGAUGGGGGGUGGGGUACGGGGGUGAGCCCUGGGUCCCCCUCUGGGCAGAUCCCGUUACACCUCUUGUUGGGGUCCUUGAUUGGGCUACGCUCUGGAЖCUGUGGAUGCAGCUGCAUGAGGCUGGAAUGGGCCUUGAGGAGCC
Sequence (SHORT NAMES ENCODING) CUACAGGCAUGCAGUCGUCUCCCCUGCAGGGCCGAGCUGGGGCCAUUCAGGCAGCCGUGGCCCUGGAGCUGAGCAGUGAUGUGGUCACCAGCCUCGAUGUGGCCGUGGAGGGGCUUAACGGGCAGCUGCCCAACCUUGACCUGCUCm6AAUCUCUUCCAGACCUUCUGCCAGAAAGGGGGCCUGUUGUGCACGCUUCAGGGCAAGGUGGGGCUGCCUGCCUGCCUGAGGGCUGAAGGGCACAGGGUCUGUGGGAGGGGCUGUCUCAUCCUGUCCUGCACCUCUAAAGCUGCAGCCCGAGGACUGGACAUCAUUGGAUGGACCGCUGCAGGGCCUGCAGACACUGCUGCUCAUGGUUCUGCGGCAGGCCUCCGGCCGCCCCCACGGCUCCCAUGGCCUCUUCCUGCGCUACCGUGUGGAGGCCCUAACCCUGCGUGGCAUCAAUAGCUUCCGCCAGUACAAGUAUGACCUGGUGGCAGUGGGCAAGGCUUUGGAGGGCAUGUUCCGCAAGCUCAACCACCYCCUGGAGCGCCUGCACCAGUCCUUCUUCCUCUACUUGCUCCCCGGCCUCUCCCGCUUCGUCUCCAUCGGCCUCUACAUGCCCGCUGUCGGCUUCUUGCUCCUGGUCCUUGGUCUCAAGAUAUCCUCUGCCCCUUGCCAUCUACCUGUGACCAGCCUCCAGUCUCCUCAACUCUAGGCUGGGGAGAGUCUUCCAUCCUGAUGGGGGGUGGGGUACGGGGGUGAGCCCUGGGUCCCCCUCUGGGCAGAUCCCGUUACACCUCUUGUUGGGGUCCUUGAUUGGGCUACGCUCUGGAm6ACUGUGGAUGCAGCUGCAUGAGGCUGGAAUGGGCCUUGAGGAGCC
Sequence (MODOMICS CODE ENCODING) CUACAGGCAUGCAGUCGUCUCCCCUGCAGGGCCGAGCUGGGGCCAUUCAGGCAGCCGUGGCCCUGGAGCUGAGCAGUGAUGUGGUCACCAGCCUCGAUGUGGCCGUGGAGGGGCUUAACGGGCAGCUGCCCAACCUUGACCUGCUC2000000006AAUCUCUUCCAGACCUUCUGCCAGAAAGGGGGCCUGUUGUGCACGCUUCAGGGCAAGGUGGGGCUGCCUGCCUGCCUGAGGGCUGAAGGGCACAGGGUCUGUGGGAGGGGCUGUCUCAUCCUGUCCUGCACCUCUAAAGCUGCAGCCCGAGGACUGGACAUCAUUGGAUGGACCGCUGCAGGGCCUGCAGACACUGCUGCUCAUGGUUCUGCGGCAGGCCUCCGGCCGCCCCCACGGCUCCCAUGGCCUCUUCCUGCGCUACCGUGUGGAGGCCCUAACCCUGCGUGGCAUCAAUAGCUUCCGCCAGUACAAGUAUGACCUGGUGGCAGUGGGCAAGGCUUUGGAGGGCAUGUUCCGCAAGCUCAACCACC2000000009UCCUGGAGCGCCUGCACCAGUCCUUCUUCCUCUACUUGCUCCCCGGCCUCUCCCGCUUCGUCUCCAUCGGCCUCUACAUGCCCGCUGUCGGCUUCUUGCUCCUGGUCCUUGGUCUCAAGAUAUCCUCUGCCCCUUGCCAUCUACCUGUGACCAGCCUCCAGUCUCCUCAACUCUAGGCUGGGGAGAGUCUUCCAUCCUGAUGGGGGGUGGGGUACGGGGGUGAGCCCUGGGUCCCCCUCUGGGCAGAUCCCGUUACACCUCUUGUUGGGGUCCUUGAUUGGGCUACGCUCUGGA2000000006ACUGUGGAUGCAGCUGCAUGAGGCUGGAAUGGGCCUUGAGGAGCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 147 518 812
Modification Positions m6A Y m6A
Genomic Coordinates 8:144084274:+ 8:144084757:+ 8:144085051:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
ArijeGVTwYBw
KTLz8piFYdwC
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8