General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000519207
Gene ID:	ENSG00000104611
Gene Name:	SH2D4A
Sequence (UNICHARACTER ENCODING)	CGGCGCCCGGGGCGGGCUCAGGUGCGGGGUUGGGCGGCGAGAGCGGCCGCGGCGGGUGUCCGGUGUCCGGUGUCCGGUGUCCGGUGUCUGGAGCCGCUGGCUAGGUUCAGUGAACAGCAUUUUGGACAGGACAUUUGGUGCCAGGUCUGAGUAGCCAGUUUGCUGAAUUAUUGUCCCAGUCAGCCAGGAUUGUGAGCUGUUUGGGAAGUUUCGUGGAAACGCCCAAGUGCCAGCACAGGUGGAGGGACACCUGGAGGCCAGUUUCAGGAЖCUUUUGCCACAAGUAUAAAAGЖCUUCAGAAGUGCAAAGAUGCUGAAACAGAUACUGUCGGAGAUGUACAUAGAUCCUGAUCUACUGGCAGAGCUCAGCGAAGAACAGAAACAGAUCCUGUUCUUCAAGAUGAGAGAGGAACAGAUCCGACGAUGGAAAGAAAGAGAAGCAGCUAUGGAAAGAAAGGAGUCCCUGCCAGUGAAACCCAGACCAAAGAAAGAGAAUGGCAAAUCGGUUCAUUGGAAACUUGGAGCUGAUAAGGAAGUCUGGGUAUGGGUGAUGGGCGAACACCAUCUAGAUAAACCCUAUGAUGUGCUCUGUAAUGAAAUUAUUGCUGAGAGGGCCCGGCUGAAAGCAGAACAGGAGGCAGAAGAGCCCAGAAAAACUCACUCUGAAGAAUUCACCAAUAGCUUGAAAACAAAAUCACAGUACCAUGAUCUGCAGGCUCCGGAUAACCAGCAGACUAAAGACAUCUGGAAGAAAGUGGCAGAAAAGGAGGAACUGGAGCAAGGAUCGAGGCCAGCACCAACCCUGGAAGAAGAGAAAAUCCGAUCACUCUCCAGUUCUUCAAGAAAUAUUCAACAAAUGUUGGCAGAUUCAAUCAAUCGUAUGAAGGCAUAUGCAUUUCACCAGAAGAAAGAAUCUAUGAAGAAAAAACAAGAUGAAGAAAUAAAUCAAAUAGAAGAAGAGAGAACGAAGCAGAUUUGUAAGAGCUGGAAAGAAGACUCGGAAUGGCAGGCAUCUCUGCGAAAAUCCAAAGCAGCUGAUGAGAAGAGACGCUCCUUGGCUAAACAAGCACGAGAAGACUACAAGAGGUUAUCCCUCGGGGCCCAGAAAGGAAGAGGCGGUGAGAGGCUGCAAAGCCCCUUGCGUGUUCCGCAGAAACCAGAAAGACCUCCCCUUCCACCCAAGCCUCAGUUCCUAAACUCAGGGGCAUAUCCUCAAAAACCUCUUAGAAAUCAGGGAGUGGUGAGGACACUGUCCAGCUCUGCCCAAGAGGACAUCAPCCGGUGGUUUAAAGAGGAGCAGCUACCACUUCGAGCGGGCUACCAGAAAACCUCAGACACCAUAGCCCCCUGGUUCCAUGGAAUUCUCACACUCAAGAAAGCAAAUGAACUUCUUCUGAGCACAGGCAUGCCCGGCAGUUUUCUCAPCCGAGUCAGUGAAAGGAUCAAAGGCUAUGCCCUGUCCUAUCUGUCGGAGGACGGCUGUAAACAUUUCCUCAUCGAUGCCUCUGCAGACGCCUACAGCUUCCUGGGCGUGGACCAGCUACAGCAUGCCACCUUGGCGGAUUUGGUGGAAUAUCACAAGGAGGAACCCAUCACUUCCCUGGGGAAGGAGCUCCUUCUCUAUCCCUGUGGUCAGCAGGACCAGCUGCCUGACUACCUGGAGCUGUUUGAGUGACAGCCUCCAUCAGGGUCAPCCUACAGCCUCCAAGCGGGCUUUCCCCUGGЖCAAAUGCCACUGCAACAUUUAUGUGUGAAGCCAAAAUCACCCUGCAGCAGAGCCAAUACUGAUCAACUGAAAGUAAAGUAUCCAUGGAGUCCUCAUUGACACCUCUUUUCUGCACAAAUACUGGAAUUCAAUGUCAAGAGAAAAUGACCUCUGCUCAAAAGGGAGAAGAGUCUCAAUUUCAGCAAGUACCUGUCAUGAAGGGUAUGACCUUAAUGAUGUACAUAAAAUAAAACAAAUGAAGAAAUGGAAAЖCUUUUAGAAA
Sequence (SHORT NAMES ENCODING)	CGGCGCCCGGGGCGGGCUCAGGUGCGGGGUUGGGCGGCGAGAGCGGCCGCGGCGGGUGUCCGGUGUCCGGUGUCCGGUGUCCGGUGUCUGGAGCCGCUGGCUAGGUUCAGUGAACAGCAUUUUGGACAGGACAUUUGGUGCCAGGUCUGAGUAGCCAGUUUGCUGAAUUAUUGUCCCAGUCAGCCAGGAUUGUGAGCUGUUUGGGAAGUUUCGUGGAAACGCCCAAGUGCCAGCACAGGUGGAGGGACACCUGGAGGCCAGUUUCAGGAm6ACUUUUGCCACAAGUAUAAAAGm6ACUUCAGAAGUGCAAAGAUGCUGAAACAGAUACUGUCGGAGAUGUACAUAGAUCCUGAUCUACUGGCAGAGCUCAGCGAAGAACAGAAACAGAUCCUGUUCUUCAAGAUGAGAGAGGAACAGAUCCGACGAUGGAAAGAAAGAGAAGCAGCUAUGGAAAGAAAGGAGUCCCUGCCAGUGAAACCCAGACCAAAGAAAGAGAAUGGCAAAUCGGUUCAUUGGAAACUUGGAGCUGAUAAGGAAGUCUGGGUAUGGGUGAUGGGCGAACACCAUCUAGAUAAACCCUAUGAUGUGCUCUGUAAUGAAAUUAUUGCUGAGAGGGCCCGGCUGAAAGCAGAACAGGAGGCAGAAGAGCCCAGAAAAACUCACUCUGAAGAAUUCACCAAUAGCUUGAAAACAAAAUCACAGUACCAUGAUCUGCAGGCUCCGGAUAACCAGCAGACUAAAGACAUCUGGAAGAAAGUGGCAGAAAAGGAGGAACUGGAGCAAGGAUCGAGGCCAGCACCAACCCUGGAAGAAGAGAAAAUCCGAUCACUCUCCAGUUCUUCAAGAAAUAUUCAACAAAUGUUGGCAGAUUCAAUCAAUCGUAUGAAGGCAUAUGCAUUUCACCAGAAGAAAGAAUCUAUGAAGAAAAAACAAGAUGAAGAAAUAAAUCAAAUAGAAGAAGAGAGAACGAAGCAGAUUUGUAAGAGCUGGAAAGAAGACUCGGAAUGGCAGGCAUCUCUGCGAAAAUCCAAAGCAGCUGAUGAGAAGAGACGCUCCUUGGCUAAACAAGCACGAGAAGACUACAAGAGGUUAUCCCUCGGGGCCCAGAAAGGAAGAGGCGGUGAGAGGCUGCAAAGCCCCUUGCGUGUUCCGCAGAAACCAGAAAGACCUCCCCUUCCACCCAAGCCUCAGUUCCUAAACUCAGGGGCAUAUCCUCAAAAACCUCUUAGAAAUCAGGGAGUGGUGAGGACACUGUCCAGCUCUGCCCAAGAGGACAUCAYCCGGUGGUUUAAAGAGGAGCAGCUACCACUUCGAGCGGGCUACCAGAAAACCUCAGACACCAUAGCCCCCUGGUUCCAUGGAAUUCUCACACUCAAGAAAGCAAAUGAACUUCUUCUGAGCACAGGCAUGCCCGGCAGUUUUCUCAYCCGAGUCAGUGAAAGGAUCAAAGGCUAUGCCCUGUCCUAUCUGUCGGAGGACGGCUGUAAACAUUUCCUCAUCGAUGCCUCUGCAGACGCCUACAGCUUCCUGGGCGUGGACCAGCUACAGCAUGCCACCUUGGCGGAUUUGGUGGAAUAUCACAAGGAGGAACCCAUCACUUCCCUGGGGAAGGAGCUCCUUCUCUAUCCCUGUGGUCAGCAGGACCAGCUGCCUGACUACCUGGAGCUGUUUGAGUGACAGCCUCCAUCAGGGUCAYCCUACAGCCUCCAAGCGGGCUUUCCCCUGGm6ACAAAUGCCACUGCAACAUUUAUGUGUGAAGCCAAAAUCACCCUGCAGCAGAGCCAAUACUGAUCAACUGAAAGUAAAGUAUCCAUGGAGUCCUCAUUGACACCUCUUUUCUGCACAAAUACUGGAAUUCAAUGUCAAGAGAAAAUGACCUCUGCUCAAAAGGGAGAAGAGUCUCAAUUUCAGCAAGUACCUGUCAUGAAGGGUAUGACCUUAAUGAUGUACAUAAAAUAAAACAAAUGAAGAAAUGGAAAm6ACUUUUAGAAA
Sequence (MODOMICS CODE ENCODING)	CGGCGCCCGGGGCGGGCUCAGGUGCGGGGUUGGGCGGCGAGAGCGGCCGCGGCGGGUGUCCGGUGUCCGGUGUCCGGUGUCCGGUGUCUGGAGCCGCUGGCUAGGUUCAGUGAACAGCAUUUUGGACAGGACAUUUGGUGCCAGGUCUGAGUAGCCAGUUUGCUGAAUUAUUGUCCCAGUCAGCCAGGAUUGUGAGCUGUUUGGGAAGUUUCGUGGAAACGCCCAAGUGCCAGCACAGGUGGAGGGACACCUGGAGGCCAGUUUCAGGA2000000006ACUUUUGCCACAAGUAUAAAAG2000000006ACUUCAGAAGUGCAAAGAUGCUGAAACAGAUACUGUCGGAGAUGUACAUAGAUCCUGAUCUACUGGCAGAGCUCAGCGAAGAACAGAAACAGAUCCUGUUCUUCAAGAUGAGAGAGGAACAGAUCCGACGAUGGAAAGAAAGAGAAGCAGCUAUGGAAAGAAAGGAGUCCCUGCCAGUGAAACCCAGACCAAAGAAAGAGAAUGGCAAAUCGGUUCAUUGGAAACUUGGAGCUGAUAAGGAAGUCUGGGUAUGGGUGAUGGGCGAACACCAUCUAGAUAAACCCUAUGAUGUGCUCUGUAAUGAAAUUAUUGCUGAGAGGGCCCGGCUGAAAGCAGAACAGGAGGCAGAAGAGCCCAGAAAAACUCACUCUGAAGAAUUCACCAAUAGCUUGAAAACAAAAUCACAGUACCAUGAUCUGCAGGCUCCGGAUAACCAGCAGACUAAAGACAUCUGGAAGAAAGUGGCAGAAAAGGAGGAACUGGAGCAAGGAUCGAGGCCAGCACCAACCCUGGAAGAAGAGAAAAUCCGAUCACUCUCCAGUUCUUCAAGAAAUAUUCAACAAAUGUUGGCAGAUUCAAUCAAUCGUAUGAAGGCAUAUGCAUUUCACCAGAAGAAAGAAUCUAUGAAGAAAAAACAAGAUGAAGAAAUAAAUCAAAUAGAAGAAGAGAGAACGAAGCAGAUUUGUAAGAGCUGGAAAGAAGACUCGGAAUGGCAGGCAUCUCUGCGAAAAUCCAAAGCAGCUGAUGAGAAGAGACGCUCCUUGGCUAAACAAGCACGAGAAGACUACAAGAGGUUAUCCCUCGGGGCCCAGAAAGGAAGAGGCGGUGAGAGGCUGCAAAGCCCCUUGCGUGUUCCGCAGAAACCAGAAAGACCUCCCCUUCCACCCAAGCCUCAGUUCCUAAACUCAGGGGCAUAUCCUCAAAAACCUCUUAGAAAUCAGGGAGUGGUGAGGACACUGUCCAGCUCUGCCCAAGAGGACAUCA2000000009UCCGGUGGUUUAAAGAGGAGCAGCUACCACUUCGAGCGGGCUACCAGAAAACCUCAGACACCAUAGCCCCCUGGUUCCAUGGAAUUCUCACACUCAAGAAAGCAAAUGAACUUCUUCUGAGCACAGGCAUGCCCGGCAGUUUUCUCA2000000009UCCGAGUCAGUGAAAGGAUCAAAGGCUAUGCCCUGUCCUAUCUGUCGGAGGACGGCUGUAAACAUUUCCUCAUCGAUGCCUCUGCAGACGCCUACAGCUUCCUGGGCGUGGACCAGCUACAGCAUGCCACCUUGGCGGAUUUGGUGGAAUAUCACAAGGAGGAACCCAUCACUUCCCUGGGGAAGGAGCUCCUUCUCUAUCCCUGUGGUCAGCAGGACCAGCUGCCUGACUACCUGGAGCUGUUUGAGUGACAGCCUCCAUCAGGGUCA2000000009UCCUACAGCCUCCAAGCGGGCUUUCCCCUGG2000000006ACAAAUGCCACUGCAACAUUUAUGUGUGAAGCCAAAAUCACCCUGCAGCAGAGCCAAUACUGAUCAACUGAAAGUAAAGUAUCCAUGGAGUCCUCAUUGACACCUCUUUUCUGCACAAAUACUGGAAUUCAAUGUCAAGAGAAAAUGACCUCUGCUCAAAAGGGAGAAGAGUCUCAAUUUCAGCAAGUACCUGUCAUGAAGGGUAUGACCUUAAUGAUGUACAUAAAAUAAAACAAAUGAAGAAAUGGAAA2000000006ACUUUUAGAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	270	292	1276	1423	1692	1723	1974
Modification Positions	m6A	m6A	Y	Y	Y	m6A	m6A
Genomic Coordinates	8:19319509:+	8:19319531:+	8:19373580:+	8:19393384:+	8:19394661:+	8:19394692:+	8:19394943:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3	6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd Q36pf44ZRvxu VL7zkHvkfkoB WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr