Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000637095
Gene ID: ENSG00000104763
Gene Name: ASAH1
Sequence (UNICHARACTER ENCODING) CCCGGCCCAGCCGGCUCUUCUUUGCCUCUGCUGGAGUCCGGGGAGUGGCGUUGGCUGCUAGAGCGAPGCCGGGCCGGAGUUGCGUCGCCUUAGUCCUCCUGGCUGCCGCCGUCAGCUGUGCCGUCGCGCAGCACGCGCCGCCGPGGACAGAGGACUGCAGAAAAUCAACCUAUCCUCCUUCAGGACCAACGUACЖGAGGUGCAGUUCCAUGGUACACCAUAAAUCUUGACUUACCACCCUACAAAAGAUGCUAAAGGUUAUAGUGAAUUCUCUGAAGAAUAUGAUAAAUACAUUCGUGCCAAGUGGAAAAAUUAUGCAGGUGGUGGAUGAAAAAUUGCCUGGCCUACUUGGCAACUUUCCUGGCCCUUUUGAAGAGGAAAUGAAGGGUAUUGCCGCUGUUACUGAUAUACCUPUAGGAGAGAUUAUUUCAUUCAAUAUUUUUUAUGAAUUAUUUACCAUUUGUACUUCAAUAGUAGCAGAAGACAAAAAAGGUCAUCUAAUACAUGGGAGAAACAUGGAUUUUGGAGUAUUUCUUGGGUGGAACAUAAAUAAUGAUACCUGGGUCAUAACUGAGCAACUAAAACCUPUAЖCAGUGAAUUUGGAUUUCCAAAGAAACAACAAAACUGUCUUCAAGGCUUCAAGCUUUGCUGGCUAUGUGGGCAUGUUAACAGGAUUCAAACCAGGACUGUUCAGUCUUACACUGAAUGAACGUUUCAGUAUAAAUGGUGGUUAUCUGGGUAUUCUAGAAUGGAUUCUGGGAAAGAAAGAUGUCAUGUGGAUAGGGUUCCUCACUAGAACAGUUCUGGAAAAUAGCACAAGUUAUGAAGAAGCCAAGAAUUUAUUGACCAAGACCAAGAUAUUGGCCCCAGCCUACUPUAUCCUGGGAGGCAACCAGUCUGGGGAAGGUUGUGUGAUUACACGAGACAGAAAGGAAUCAUUGGAUGUAUAUGAACUCGAUGCUAAGCAGGGUAGAUGGUAUGUGGUACAAACAAAUUAUGACCGUUGGAAACAUCCCUUCUUCCUUGAUGAUCGCAGAACGCCUGCAAAGAUGUGUCUGAACCGCACCAGCCAAGAGAAUAUCUCAUUUGAAACCAUGUAUGAUGUCCUGUCAACAAAACCUGUCCUCAACAAGCUGACCGUAUACACAACCUUGAUAGAUGUUACCAAAGGUCAAUUCGAAЖCUUACCUGCGGGACUGCCCUGACCCUUGUAUAGGUUGGUGAGCACACGUCUGGCCUACAGAAUGCGGCCUCUGAGACAUGAAGACACCAUCUCCAUGUGACCGAACACUGCAGCUGUCUGACCUUCCAAAGACUAAGACUCGCGGCAGGUUCUCUUUGAGUCAAUAGCUUGUCUUCGUCCAUCUGUUGACAAAUGACAGAUCUUUUUUUUUUCCCCCUAUCAGUUGAUUUUUCUUAUUUACЖGAUAЖCUUCUPUAGGGGAAGUAAAЖCAGUCAUCUAGAAUUCACUGAGUUUUGUUUCACUUUGACAUUUGGGGAUCUGGUGGGCAGUCGAACCAUGGUGAACUCCACCPCCGUGGAAUAAAUGGAGAUUCAGCGUGGGUGUUGAAUCCAGCACGUCUGUGUGAGUAACGGGЖCAGUAAЖCACUCCACAUUCUUCAGUUUUUCACUUCUACCUACAUAUUUGUAUGUUUUUCUGUAUAACAGCCUUUUCCUUCUGGUUCUAACUGCUGUUAAAAUUAAUAUAUCAUUAUCUUUGCUGUUAUUGACAGCGAUAUAAUUUUAUUACAUAUGAUUAGAGGGAUGAGACAGЖCAUUCACCUGUAUAUUUCUUUUAAUGGGCACAAAAUGGGCCCUUGCCUCUAAAUAGCACUUUUUGGGGUUCAAGAAGUAAUCAGUAUGCAAAGCAAUCUUUUAUACЖAUAAUUGAAGUGUUCCCUUUUUCAUAAUUACUCUACUUCCCAGUAACCCUAAGGAAGUUGCUAЖCUUAAAAAЖCUGCAPCCCACGUUCUGUUAAUUUAGUAAAUAAЖCAAGUCAAAGACUUGUGGAAAAUAGGAAGUGAACCCAUAUUUUAAAUUCUCAUAAGUAGCAUUCA
Sequence (SHORT NAMES ENCODING) CCCGGCCCAGCCGGCUCUUCUUUGCCUCUGCUGGAGUCCGGGGAGUGGCGUUGGCUGCUAGAGCGAYGCCGGGCCGGAGUUGCGUCGCCUUAGUCCUCCUGGCUGCCGCCGUCAGCUGUGCCGUCGCGCAGCACGCGCCGCCGYGGACAGAGGACUGCAGAAAAUCAACCUAUCCUCCUUCAGGACCAACGUACm6AGAGGUGCAGUUCCAUGGUACACCAUAAAUCUUGACUUACCACCCUACAAAAGAUGCUAAAGGUUAUAGUGAAUUCUCUGAAGAAUAUGAUAAAUACAUUCGUGCCAAGUGGAAAAAUUAUGCAGGUGGUGGAUGAAAAAUUGCCUGGCCUACUUGGCAACUUUCCUGGCCCUUUUGAAGAGGAAAUGAAGGGUAUUGCCGCUGUUACUGAUAUACCUYUAGGAGAGAUUAUUUCAUUCAAUAUUUUUUAUGAAUUAUUUACCAUUUGUACUUCAAUAGUAGCAGAAGACAAAAAAGGUCAUCUAAUACAUGGGAGAAACAUGGAUUUUGGAGUAUUUCUUGGGUGGAACAUAAAUAAUGAUACCUGGGUCAUAACUGAGCAACUAAAACCUYUAm6ACAGUGAAUUUGGAUUUCCAAAGAAACAACAAAACUGUCUUCAAGGCUUCAAGCUUUGCUGGCUAUGUGGGCAUGUUAACAGGAUUCAAACCAGGACUGUUCAGUCUUACACUGAAUGAACGUUUCAGUAUAAAUGGUGGUUAUCUGGGUAUUCUAGAAUGGAUUCUGGGAAAGAAAGAUGUCAUGUGGAUAGGGUUCCUCACUAGAACAGUUCUGGAAAAUAGCACAAGUUAUGAAGAAGCCAAGAAUUUAUUGACCAAGACCAAGAUAUUGGCCCCAGCCUACUYUAUCCUGGGAGGCAACCAGUCUGGGGAAGGUUGUGUGAUUACACGAGACAGAAAGGAAUCAUUGGAUGUAUAUGAACUCGAUGCUAAGCAGGGUAGAUGGUAUGUGGUACAAACAAAUUAUGACCGUUGGAAACAUCCCUUCUUCCUUGAUGAUCGCAGAACGCCUGCAAAGAUGUGUCUGAACCGCACCAGCCAAGAGAAUAUCUCAUUUGAAACCAUGUAUGAUGUCCUGUCAACAAAACCUGUCCUCAACAAGCUGACCGUAUACACAACCUUGAUAGAUGUUACCAAAGGUCAAUUCGAAm6ACUUACCUGCGGGACUGCCCUGACCCUUGUAUAGGUUGGUGAGCACACGUCUGGCCUACAGAAUGCGGCCUCUGAGACAUGAAGACACCAUCUCCAUGUGACCGAACACUGCAGCUGUCUGACCUUCCAAAGACUAAGACUCGCGGCAGGUUCUCUUUGAGUCAAUAGCUUGUCUUCGUCCAUCUGUUGACAAAUGACAGAUCUUUUUUUUUUCCCCCUAUCAGUUGAUUUUUCUUAUUUACm6AGAUAm6ACUUCUYUAGGGGAAGUAAAm6ACAGUCAUCUAGAAUUCACUGAGUUUUGUUUCACUUUGACAUUUGGGGAUCUGGUGGGCAGUCGAACCAUGGUGAACUCCACCYCCGUGGAAUAAAUGGAGAUUCAGCGUGGGUGUUGAAUCCAGCACGUCUGUGUGAGUAACGGGm6ACAGUAAm6ACACUCCACAUUCUUCAGUUUUUCACUUCUACCUACAUAUUUGUAUGUUUUUCUGUAUAACAGCCUUUUCCUUCUGGUUCUAACUGCUGUUAAAAUUAAUAUAUCAUUAUCUUUGCUGUUAUUGACAGCGAUAUAAUUUUAUUACAUAUGAUUAGAGGGAUGAGACAGm6ACAUUCACCUGUAUAUUUCUUUUAAUGGGCACAAAAUGGGCCCUUGCCUCUAAAUAGCACUUUUUGGGGUUCAAGAAGUAAUCAGUAUGCAAAGCAAUCUUUUAUACm6AAUAAUUGAAGUGUUCCCUUUUUCAUAAUUACUCUACUUCCCAGUAACCCUAAGGAAGUUGCUAm6ACUUAAAAAm6ACUGCAYCCCACGUUCUGUUAAUUUAGUAAAUAAm6ACAAGUCAAAGACUUGUGGAAAAUAGGAAGUGAACCCAUAUUUUAAAUUCUCAUAAGUAGCAUUCA
Sequence (MODOMICS CODE ENCODING) CCCGGCCCAGCCGGCUCUUCUUUGCCUCUGCUGGAGUCCGGGGAGUGGCGUUGGCUGCUAGAGCGA2000000009UGCCGGGCCGGAGUUGCGUCGCCUUAGUCCUCCUGGCUGCCGCCGUCAGCUGUGCCGUCGCGCAGCACGCGCCGCCG2000000009UGGACAGAGGACUGCAGAAAAUCAACCUAUCCUCCUUCAGGACCAACGUAC2000000006AGAGGUGCAGUUCCAUGGUACACCAUAAAUCUUGACUUACCACCCUACAAAAGAUGCUAAAGGUUAUAGUGAAUUCUCUGAAGAAUAUGAUAAAUACAUUCGUGCCAAGUGGAAAAAUUAUGCAGGUGGUGGAUGAAAAAUUGCCUGGCCUACUUGGCAACUUUCCUGGCCCUUUUGAAGAGGAAAUGAAGGGUAUUGCCGCUGUUACUGAUAUACCU2000000009UUAGGAGAGAUUAUUUCAUUCAAUAUUUUUUAUGAAUUAUUUACCAUUUGUACUUCAAUAGUAGCAGAAGACAAAAAAGGUCAUCUAAUACAUGGGAGAAACAUGGAUUUUGGAGUAUUUCUUGGGUGGAACAUAAAUAAUGAUACCUGGGUCAUAACUGAGCAACUAAAACCU2000000009UUA2000000006ACAGUGAAUUUGGAUUUCCAAAGAAACAACAAAACUGUCUUCAAGGCUUCAAGCUUUGCUGGCUAUGUGGGCAUGUUAACAGGAUUCAAACCAGGACUGUUCAGUCUUACACUGAAUGAACGUUUCAGUAUAAAUGGUGGUUAUCUGGGUAUUCUAGAAUGGAUUCUGGGAAAGAAAGAUGUCAUGUGGAUAGGGUUCCUCACUAGAACAGUUCUGGAAAAUAGCACAAGUUAUGAAGAAGCCAAGAAUUUAUUGACCAAGACCAAGAUAUUGGCCCCAGCCUACU2000000009UUAUCCUGGGAGGCAACCAGUCUGGGGAAGGUUGUGUGAUUACACGAGACAGAAAGGAAUCAUUGGAUGUAUAUGAACUCGAUGCUAAGCAGGGUAGAUGGUAUGUGGUACAAACAAAUUAUGACCGUUGGAAACAUCCCUUCUUCCUUGAUGAUCGCAGAACGCCUGCAAAGAUGUGUCUGAACCGCACCAGCCAAGAGAAUAUCUCAUUUGAAACCAUGUAUGAUGUCCUGUCAACAAAACCUGUCCUCAACAAGCUGACCGUAUACACAACCUUGAUAGAUGUUACCAAAGGUCAAUUCGAA2000000006ACUUACCUGCGGGACUGCCCUGACCCUUGUAUAGGUUGGUGAGCACACGUCUGGCCUACAGAAUGCGGCCUCUGAGACAUGAAGACACCAUCUCCAUGUGACCGAACACUGCAGCUGUCUGACCUUCCAAAGACUAAGACUCGCGGCAGGUUCUCUUUGAGUCAAUAGCUUGUCUUCGUCCAUCUGUUGACAAAUGACAGAUCUUUUUUUUUUCCCCCUAUCAGUUGAUUUUUCUUAUUUAC2000000006AGAUA2000000006ACUUCU2000000009UUAGGGGAAGUAAA2000000006ACAGUCAUCUAGAAUUCACUGAGUUUUGUUUCACUUUGACAUUUGGGGAUCUGGUGGGCAGUCGAACCAUGGUGAACUCCACC2000000009UCCGUGGAAUAAAUGGAGAUUCAGCGUGGGUGUUGAAUCCAGCACGUCUGUGUGAGUAACGGG2000000006ACAGUAA2000000006ACACUCCACAUUCUUCAGUUUUUCACUUCUACCUACAUAUUUGUAUGUUUUUCUGUAUAACAGCCUUUUCCUUCUGGUUCUAACUGCUGUUAAAAUUAAUAUAUCAUUAUCUUUGCUGUUAUUGACAGCGAUAUAAUUUUAUUACAUAUGAUUAGAGGGAUGAGACAG2000000006ACAUUCACCUGUAUAUUUCUUUUAAUGGGCACAAAAUGGGCCCUUGCCUCUAAAUAGCACUUUUUGGGGUUCAAGAAGUAAUCAGUAUGCAAAGCAAUCUUUUAUAC2000000006AAUAAUUGAAGUGUUCCCUUUUUCAUAAUUACUCUACUUCCCAGUAACCCUAAGGAAGUUGCUA2000000006ACUUAAAAA2000000006ACUGCA2000000009UCCCACGUUCUGUUAAUUUAGUAAAUAA2000000006ACAAGUCAAAGACUUGUGGAAAAUAGGAAGUGAACCCAUAUUUUAAAUUCUCAUAAGUAGCAUUCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 67 144 195 413 587 590 876 1181 1423 1428 1434 1448 1531 1594 1601 1769 1876 1940 1949 1955 1983
Modification Positions Y Y m6A Y Y m6A Y m6A m6A m6A Y m6A Y m6A m6A m6A m6A m6A m6A Y m6A
Genomic Coordinates 8:18084057:- 8:18075587:- 8:18071386:- 8:18067223:- 8:18062374:- 8:18062371:- 8:18059647:- 8:18057575:- 8:18057333:- 8:18057328:- 8:18057322:- 8:18057308:- 8:18057225:- 8:18057162:- 8:18057155:- 8:18056987:- 8:18056880:- 8:18056816:- 8:18056807:- 8:18056801:- 8:18056773:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
ArijeGVTwYBw
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
ArijeGVTwYBw
WiQcrNTGZHPT
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda