Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000517942
Gene ID: ENSG00000172728
Gene Name: FUT10
Sequence (UNICHARACTER ENCODING) CCCAGCAUCACAGЖCUGGCUUCCAAGUAACAAAAGUGCUAUUCUUGUAUCAGAAUUUUCUCACCCCAGGGAЖCUGGCAAGUUACAUCAGACGACUGGAUUCUGAUGACAGAUUGUAUGAGGCCUAUGUAGAAUGGAAGCUGAAGGGUGAGAUCUCUAACCAGCGACUUCUGACAGCUCUCAGGGAACGGAAAUGGGGAGUGCAAGACGUCAACCAGGACAAUUACAUCGAUGCAUUUGAGUGUAUGGUGUGCACCAAGGUGUGGGCUAAUAUCAGGCUUCAGGAAAAGGGCUUACCACCCAAAAGAUGGGAGGCAGAAGAUACCCACCUGAGUUGCCCAGAGCCCACAGUGUUUGCUUUCUCACCACUCCGGЖCUCCACCUUUGAGCUCUUUGCGAGAGAUGUGGAUUUCCAGCUUUGAACAAUCCAAGAAAGAAGCCCAGGCACUAAGCUUAUUGGUAUUUGGCAAACCUGGUAUCCUGCAGCCGAGCAUGAACAUGAAAUACAUUAGAACUUGGCAAUGAGAGAUCCCAUCUGUUGGUUUCCAGGGAUGUAAGUGAGUAAUAAAAGCUGUUUCAAGUUUA
Sequence (SHORT NAMES ENCODING) CCCAGCAUCACAGm6ACUGGCUUCCAAGUAACAAAAGUGCUAUUCUUGUAUCAGAAUUUUCUCACCCCAGGGAm6ACUGGCAAGUUACAUCAGACGACUGGAUUCUGAUGACAGAUUGUAUGAGGCCUAUGUAGAAUGGAAGCUGAAGGGUGAGAUCUCUAACCAGCGACUUCUGACAGCUCUCAGGGAACGGAAAUGGGGAGUGCAAGACGUCAACCAGGACAAUUACAUCGAUGCAUUUGAGUGUAUGGUGUGCACCAAGGUGUGGGCUAAUAUCAGGCUUCAGGAAAAGGGCUUACCACCCAAAAGAUGGGAGGCAGAAGAUACCCACCUGAGUUGCCCAGAGCCCACAGUGUUUGCUUUCUCACCACUCCGGm6ACUCCACCUUUGAGCUCUUUGCGAGAGAUGUGGAUUUCCAGCUUUGAACAAUCCAAGAAAGAAGCCCAGGCACUAAGCUUAUUGGUAUUUGGCAAACCUGGUAUCCUGCAGCCGAGCAUGAACAUGAAAUACAUUAGAACUUGGCAAUGAGAGAUCCCAUCUGUUGGUUUCCAGGGAUGUAAGUGAGUAAUAAAAGCUGUUUCAAGUUUA
Sequence (MODOMICS CODE ENCODING) CCCAGCAUCACAG2000000006ACUGGCUUCCAAGUAACAAAAGUGCUAUUCUUGUAUCAGAAUUUUCUCACCCCAGGGA2000000006ACUGGCAAGUUACAUCAGACGACUGGAUUCUGAUGACAGAUUGUAUGAGGCCUAUGUAGAAUGGAAGCUGAAGGGUGAGAUCUCUAACCAGCGACUUCUGACAGCUCUCAGGGAACGGAAAUGGGGAGUGCAAGACGUCAACCAGGACAAUUACAUCGAUGCAUUUGAGUGUAUGGUGUGCACCAAGGUGUGGGCUAAUAUCAGGCUUCAGGAAAAGGGCUUACCACCCAAAAGAUGGGAGGCAGAAGAUACCCACCUGAGUUGCCCAGAGCCCACAGUGUUUGCUUUCUCACCACUCCGG2000000006ACUCCACCUUUGAGCUCUUUGCGAGAGAUGUGGAUUUCCAGCUUUGAACAAUCCAAGAAAGAAGCCCAGGCACUAAGCUUAUUGGUAUUUGGCAAACCUGGUAUCCUGCAGCCGAGCAUGAACAUGAAAUACAUUAGAACUUGGCAAUGAGAGAUCCCAUCUGUUGGUUUCCAGGGAUGUAAGUGAGUAAUAAAAGCUGUUUCAAGUUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 14 72 373
Modification Positions m6A m6A m6A
Genomic Coordinates 8:33389237:- 8:33389179:- 8:33372720:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
Ap2q43bQLNek
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
BtsJQJ3DteUq