Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000527827
Gene ID: ENSG00000071894
Gene Name: CPSF1
Sequence (UNICHARACTER ENCODING) CAUCAACUUCCGUGAGAAGAAGCCAAAGCCAPCCAAGAAGAAAGCAGAAGGUGGCGGCGCAGAGGAGGGGGCUGGGGCCCGGGGCCGCGUGGCGCGUUUCCGCUACUUCGAGGAUAUUUAUGGCUACU?AGGGGUCUUCAUCUGCGGCCCCUCCCCUCACUGGCUCUUGGUGACCGGCCGAGGGGCUCUGCGGCUACACCCCAUGGCCAUCGACGGCCCGGUCGACUCUUUCGCUCCAUUCCACAAUGUCAACUGUCCCCGCGGCUUCCUGUACUUCAACAGACAGGUGGGGCCCGGCCGGUUCCCAGCAGCACUGGCUGAUGCUGCCCCAGCUGGGGGCUGAGGGGGAGGGGACAGGAGAAGGGACCAUUGGCUCCACCCUGAGGACCAGGAAGGAGUGUCCAGAGGGCGAUGGGGUUGAGGUCGAGGAGGUGGAACCUGUGACUUGGUUGCUCCAAAGGUCUGGAAAGGGGUGGUUGGGAGCUGGGGCUGCAGCCCCUGGGGUCCCCACCACUGCUCUGCCGGCUCGCCGGGCAAGCCCUCGCAGGGCCUGGCCUCCACACUUCUCAGGAGAGCUGACGUGAGUGCUAGCUCUGCCCCUUGGCUGCUCUGUGЖCUUU
Sequence (SHORT NAMES ENCODING) CAUCAACUUCCGUGAGAAGAAGCCAAAGCCAYCCAAGAAGAAAGCAGAAGGUGGCGGCGCAGAGGAGGGGGCUGGGGCCCGGGGCCGCGUGGCGCGUUUCCGCUACUUCGAGGAUAUUUAUGGCUACUm5CAGGGGUCUUCAUCUGCGGCCCCUCCCCUCACUGGCUCUUGGUGACCGGCCGAGGGGCUCUGCGGCUACACCCCAUGGCCAUCGACGGCCCGGUCGACUCUUUCGCUCCAUUCCACAAUGUCAACUGUCCCCGCGGCUUCCUGUACUUCAACAGACAGGUGGGGCCCGGCCGGUUCCCAGCAGCACUGGCUGAUGCUGCCCCAGCUGGGGGCUGAGGGGGAGGGGACAGGAGAAGGGACCAUUGGCUCCACCCUGAGGACCAGGAAGGAGUGUCCAGAGGGCGAUGGGGUUGAGGUCGAGGAGGUGGAACCUGUGACUUGGUUGCUCCAAAGGUCUGGAAAGGGGUGGUUGGGAGCUGGGGCUGCAGCCCCUGGGGUCCCCACCACUGCUCUGCCGGCUCGCCGGGCAAGCCCUCGCAGGGCCUGGCCUCCACACUUCUCAGGAGAGCUGACGUGAGUGCUAGCUCUGCCCCUUGGCUGCUCUGUGm6ACUUU
Sequence (MODOMICS CODE ENCODING) CAUCAACUUCCGUGAGAAGAAGCCAAAGCCA2000000009UCCAAGAAGAAAGCAGAAGGUGGCGGCGCAGAGGAGGGGGCUGGGGCCCGGGGCCGCGUGGCGCGUUUCCGCUACUUCGAGGAUAUUUAUGGCUACU2000000005CAGGGGUCUUCAUCUGCGGCCCCUCCCCUCACUGGCUCUUGGUGACCGGCCGAGGGGCUCUGCGGCUACACCCCAUGGCCAUCGACGGCCCGGUCGACUCUUUCGCUCCAUUCCACAAUGUCAACUGUCCCCGCGGCUUCCUGUACUUCAACAGACAGGUGGGGCCCGGCCGGUUCCCAGCAGCACUGGCUGAUGCUGCCCCAGCUGGGGGCUGAGGGGGAGGGGACAGGAGAAGGGACCAUUGGCUCCACCCUGAGGACCAGGAAGGAGUGUCCAGAGGGCGAUGGGGUUGAGGUCGAGGAGGUGGAACCUGUGACUUGGUUGCUCCAAAGGUCUGGAAAGGGGUGGUUGGGAGCUGGGGCUGCAGCCCCUGGGGUCCCCACCACUGCUCUGCCGGCUCGCCGGGCAAGCCCUCGCAGGGCCUGGCCUCCACACUUCUCAGGAGAGCUGACGUGAGUGCUAGCUCUGCCCCUUGGCUGCUCUGUG2000000006ACUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 32 129 615
Modification Positions Y m5C m6A
Genomic Coordinates 8:144396699:- 8:144396602:- 8:144396019:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
4RW3xrzJ5VQa
Er3yHVFp6tX8
JBTYPMm6qNsy
KyXZuxKVckYS
4Hod8ruppnD2
5tjPWDS39J3i
9De2LACts9mj
BnpqjwVeTStU
bvmqLAbo2zqf
mNhhJTdKpjtR
3TeAZFYFxgvp
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se