General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000523308
Gene ID:	ENSG00000105339
Gene Name:	DENND3
Sequence (UNICHARACTER ENCODING)	CAGUUCUGCUUGUUCACAUACAGUCGGUCUCAUCAUUUGGAGAUUCCGUAUUUGCAAAUUCGACCACCUGCUAAUAUUUACUUGUAACUCCCAAAACAGAUACUCGUGGUAUUUUCUUGGUGAUCCACAGACAUCCACGUGCACAGACGGGGGAAAAACUUGAGUCACCUGAUAUGGAUUUUCUGGGCCAACAAGUGUCCUCUCCUCGGCCUGAUUGGUGCCACAGUUUUCACAUUUUUUGCUUUUCGUUGGUGAUUUUGCCAUUUAAGAAAGCCUCAAGCAUGGAGCUCCCUAAGCACAAGGAGGCGGUGACGUGUCUUGCAGAGAAAAUGCAUGUGUGAGAUGAGCUUGGUUCAGGCCGCAGUGACAGUGCUGGCGGCCGUGGGUUUCGUGUUAAUGAAUCAAUCAUACGUAGUCAAUAAGGUGUCUGUGAACAGAGCACGCGGAGAACAAGGUUAUGCACUGAUGGGUGGAUGACAACGUCAGGGCCAGAGGCUCCCAGGACCCUGAGCCGGCGUGUCCCCUAGGAGCAGUGGUUCCAUAUCCGCUAAUUCAGCACGUGCAGUAAAUGUAUAGAAUAUGACUUCACCAGUAUCGAGACUGЖCUGAUUUCUCACGUUCCCGUGGCCUCCUGUUAGAACUGCAUGGUGAUGGCCGACCAGAACCAGGUGUGGGUUGGCUCGGAAGACUCCGUCAUCUACAUCAUCAACGUCCACAGCAUGUCCUGCAACAAGCAGCUCACAGCCCACUGCUCCAGUGUCACGGAUUUGAUUGUGCAGGACGGACAGGAGGCACCCAGCAACGUGUACUCGUGCAGCAUGGACGGCAUGGUGCUGGUGUGGAAUGUGAGCACACUGCAGGUGACCAGCCGCUUCCAGCUGCCGCGAGGUGGCCUGACGUCCAUCAGACUGCACGGCGGCCGCCUGUGGUGCUGCACAGGUAACAGCAUCAUGGUCAUGAAAAUGAAUGGAUCCCUCCAUCAAGAAUUGAAGAUUGAGGAGAACUUCAAAGACACCAGUACCUCCUUCCUGGCCUUCCAGCUCCUUCCUGAGGAGGAGCAGCUGUGGGCGGCCUGUGCAGGACGCAGCGAGGUUUACAUCUGGAGCCUGAAGGACCUGGCCCAGCCCCCGCAGAGGGUGCCCCUCGAGGACUGCUCUGAGAUCAACUGCAUGAUCCGGGUGAAGAAGCAGGUCUGGGUGGGCAGCCGAGGGCUGGGGCAGGGAACACCCAAGGGGAAAAUCUACGUGAUUGACGCCGAGAGGAAGACCGUGGAGAAGGAGCUGGUGGCGCACAUGGACACCGUGAGGACGCUGUGCUCGGCUGAGGЖCAGAUACGUGCUGAGUGGGUCGGGCAGGGAGGAGGGGAAAGUCGCCAUUUGGAAAGGCGAAUAAACGUGGCUGAGUCUGCCAAGUGGAЖCUGUGCCCUAUGUGUGGGGЖCUGGCUGCCCCCUAGAGCCUGCCAGGAGCAGAAGCCUGGAGGGGUGGCAGGGCAGAGCAGCCCAGGCUCAGCAUGGAGCCCACUUACCGUGUGGCCAGCCGCGAGACCCAUGGCCACGCACCUUCUCUCAGGCCUUCGGGCCCCCUGGUUAAACUGCACCAAGGGUGUUUCCUGUUGGGGUGUGUCUCAGGCAGGCAGCUGCGUCUUGUUGGUGAUAACCUCUGCUGGGAGGUUACUUUGUUGCCUAGAAAGUUCUGGAAUCCACAACCAGGGGCUGGCACUGGAGCCAGCAGCUUGGCCGAGUCACAGGUGACCCGUGGCCCUCACGUCUCUGGUUUUACCUUUCCUUACUUCAUUCAUUCACUCACCCAGUCCUUACGAAUCACCGAGGAACACUGGGCUGAGCACAUGACAGGGAGCCUGGAGCCCCGGGGCCUCCAGCGAGGCCUGAGAAGGGUGGUUCGGGUAACCACUGUGGGCUCUCUCCCAUCACAGAAGGUGGACAGGGCCUACCCAGGUGGAGGGGACCACCCUGCGAUCAGGUGUUUGCGACAGGGGUUGGGCCAGCUGAGGCAAGCUGUCUUUUUUCCCUUUUCUUUUUAAUAGAUGCAACAUUUUUAUAAUAAUCCUAGAGACCUUUUUUCUACCAAAGAUCACAGACCAGAAAAAGUUCCAUCUAAAAUAUCAUGCCCAGGAAAGCACAUGGGAUCAAAAGUAAAAUAGCAUCAUGUGUGAUCUCGUCUUCCAGCGUGCCGCUCAGUUCCCCGAAUCCGUGUGCACACGUGUGAUCUCGUCUUCAGUGUGCCGCUCAGUUCCCUGAAUCCGUGUGCACACUGCGUAUGUGUACGCGCAGCAUGCUAUACUGAЖCUCAACAAGAUCUUGGCUGUACAUAAAUAUUUGUAAAAGAGЖCCCUUUGCACCUUUUUACUGUAAUGUUGAGACUUCAUUACUUAAAUGUUCUACGGAAGGUUCUGGUGUGGUUGUUGGAGCCGGAGGGAGCGUGUCAGCACGUGCUGAGGGCAUGGGGCCUGCCCCCUGGGCACCCAUCCACAAGCUGGGCCACGGAGCUCCAGCUUCUCAGGЖCAAAGCCCCGGGGCUGGCGCAUCCUGAGGGUCUCUGGGGGUGUUUGCCAGGCUCCUGGGAUGGGCCGCUUUCAGAAGCCCUGCAGUGCCUCCAGAUGGAAAGGCGGGCCCGGCCUCCGGUUGGGUCUGCAUUUUGGAGAGUCCACACCACGGACCAGGUUUUCCCCCAAGGCUUGGCUUUGUGUAGCUACUAACUUCUUGGGGCAUUCUGAGAGUGUGGGCAGAGAGAAUUAUGUGGCCUCAUCCUCCCCCAAGGCUGUGCUUGCAGCCCGGGCACCUUCCCACUUUCUAGCUCUGGAGAGGUUGGAUUUUGCUUUUGUAAACACAUGAAUCCUUAUGAUAAAAGUCUGUCAGUCAAAAAUACAUUUAUAAAUUAUUUAAUGCCAGUCCUCAUGUAACCUCAGGUAUCUUCAGCUUGUGGAGAAUAAAUCUGGUUUAAUAAA
Sequence (SHORT NAMES ENCODING)	CAGUUCUGCUUGUUCACAUACAGUCGGUCUCAUCAUUUGGAGAUUCCGUAUUUGCAAAUUCGACCACCUGCUAAUAUUUACUUGUAACUCCCAAAACAGAUACUCGUGGUAUUUUCUUGGUGAUCCACAGACAUCCACGUGCACAGACGGGGGAAAAACUUGAGUCACCUGAUAUGGAUUUUCUGGGCCAACAAGUGUCCUCUCCUCGGCCUGAUUGGUGCCACAGUUUUCACAUUUUUUGCUUUUCGUUGGUGAUUUUGCCAUUUAAGAAAGCCUCAAGCAUGGAGCUCCCUAAGCACAAGGAGGCGGUGACGUGUCUUGCAGAGAAAAUGCAUGUGUGAGAUGAGCUUGGUUCAGGCCGCAGUGACAGUGCUGGCGGCCGUGGGUUUCGUGUUAAUGAAUCAAUCAUACGUAGUCAAUAAGGUGUCUGUGAACAGAGCACGCGGAGAACAAGGUUAUGCACUGAUGGGUGGAUGACAACGUCAGGGCCAGAGGCUCCCAGGACCCUGAGCCGGCGUGUCCCCUAGGAGCAGUGGUUCCAUAUCCGCUAAUUCAGCACGUGCAGUAAAUGUAUAGAAUAUGACUUCACCAGUAUCGAGACUGm6ACUGAUUUCUCACGUUCCCGUGGCCUCCUGUUAGAACUGCAUGGUGAUGGCCGACCAGAACCAGGUGUGGGUUGGCUCGGAAGACUCCGUCAUCUACAUCAUCAACGUCCACAGCAUGUCCUGCAACAAGCAGCUCACAGCCCACUGCUCCAGUGUCACGGAUUUGAUUGUGCAGGACGGACAGGAGGCACCCAGCAACGUGUACUCGUGCAGCAUGGACGGCAUGGUGCUGGUGUGGAAUGUGAGCACACUGCAGGUGACCAGCCGCUUCCAGCUGCCGCGAGGUGGCCUGACGUCCAUCAGACUGCACGGCGGCCGCCUGUGGUGCUGCACAGGUAACAGCAUCAUGGUCAUGAAAAUGAAUGGAUCCCUCCAUCAAGAAUUGAAGAUUGAGGAGAACUUCAAAGACACCAGUACCUCCUUCCUGGCCUUCCAGCUCCUUCCUGAGGAGGAGCAGCUGUGGGCGGCCUGUGCAGGACGCAGCGAGGUUUACAUCUGGAGCCUGAAGGACCUGGCCCAGCCCCCGCAGAGGGUGCCCCUCGAGGACUGCUCUGAGAUCAACUGCAUGAUCCGGGUGAAGAAGCAGGUCUGGGUGGGCAGCCGAGGGCUGGGGCAGGGAACACCCAAGGGGAAAAUCUACGUGAUUGACGCCGAGAGGAAGACCGUGGAGAAGGAGCUGGUGGCGCACAUGGACACCGUGAGGACGCUGUGCUCGGCUGAGGm6ACAGAUACGUGCUGAGUGGGUCGGGCAGGGAGGAGGGGAAAGUCGCCAUUUGGAAAGGCGAAUAAACGUGGCUGAGUCUGCCAAGUGGAm6ACUGUGCCCUAUGUGUGGGGm6ACUGGCUGCCCCCUAGAGCCUGCCAGGAGCAGAAGCCUGGAGGGGUGGCAGGGCAGAGCAGCCCAGGCUCAGCAUGGAGCCCACUUACCGUGUGGCCAGCCGCGAGACCCAUGGCCACGCACCUUCUCUCAGGCCUUCGGGCCCCCUGGUUAAACUGCACCAAGGGUGUUUCCUGUUGGGGUGUGUCUCAGGCAGGCAGCUGCGUCUUGUUGGUGAUAACCUCUGCUGGGAGGUUACUUUGUUGCCUAGAAAGUUCUGGAAUCCACAACCAGGGGCUGGCACUGGAGCCAGCAGCUUGGCCGAGUCACAGGUGACCCGUGGCCCUCACGUCUCUGGUUUUACCUUUCCUUACUUCAUUCAUUCACUCACCCAGUCCUUACGAAUCACCGAGGAACACUGGGCUGAGCACAUGACAGGGAGCCUGGAGCCCCGGGGCCUCCAGCGAGGCCUGAGAAGGGUGGUUCGGGUAACCACUGUGGGCUCUCUCCCAUCACAGAAGGUGGACAGGGCCUACCCAGGUGGAGGGGACCACCCUGCGAUCAGGUGUUUGCGACAGGGGUUGGGCCAGCUGAGGCAAGCUGUCUUUUUUCCCUUUUCUUUUUAAUAGAUGCAACAUUUUUAUAAUAAUCCUAGAGACCUUUUUUCUACCAAAGAUCACAGACCAGAAAAAGUUCCAUCUAAAAUAUCAUGCCCAGGAAAGCACAUGGGAUCAAAAGUAAAAUAGCAUCAUGUGUGAUCUCGUCUUCCAGCGUGCCGCUCAGUUCCCCGAAUCCGUGUGCACACGUGUGAUCUCGUCUUCAGUGUGCCGCUCAGUUCCCUGAAUCCGUGUGCACACUGCGUAUGUGUACGCGCAGCAUGCUAUACUGAm6ACUCAACAAGAUCUUGGCUGUACAUAAAUAUUUGUAAAAGAGm6ACCCUUUGCACCUUUUUACUGUAAUGUUGAGACUUCAUUACUUAAAUGUUCUACGGAAGGUUCUGGUGUGGUUGUUGGAGCCGGAGGGAGCGUGUCAGCACGUGCUGAGGGCAUGGGGCCUGCCCCCUGGGCACCCAUCCACAAGCUGGGCCACGGAGCUCCAGCUUCUCAGGm6ACAAAGCCCCGGGGCUGGCGCAUCCUGAGGGUCUCUGGGGGUGUUUGCCAGGCUCCUGGGAUGGGCCGCUUUCAGAAGCCCUGCAGUGCCUCCAGAUGGAAAGGCGGGCCCGGCCUCCGGUUGGGUCUGCAUUUUGGAGAGUCCACACCACGGACCAGGUUUUCCCCCAAGGCUUGGCUUUGUGUAGCUACUAACUUCUUGGGGCAUUCUGAGAGUGUGGGCAGAGAGAAUUAUGUGGCCUCAUCCUCCCCCAAGGCUGUGCUUGCAGCCCGGGCACCUUCCCACUUUCUAGCUCUGGAGAGGUUGGAUUUUGCUUUUGUAAACACAUGAAUCCUUAUGAUAAAAGUCUGUCAGUCAAAAAUACAUUUAUAAAUUAUUUAAUGCCAGUCCUCAUGUAACCUCAGGUAUCUUCAGCUUGUGGAGAAUAAAUCUGGUUUAAUAAA
Sequence (MODOMICS CODE ENCODING)	CAGUUCUGCUUGUUCACAUACAGUCGGUCUCAUCAUUUGGAGAUUCCGUAUUUGCAAAUUCGACCACCUGCUAAUAUUUACUUGUAACUCCCAAAACAGAUACUCGUGGUAUUUUCUUGGUGAUCCACAGACAUCCACGUGCACAGACGGGGGAAAAACUUGAGUCACCUGAUAUGGAUUUUCUGGGCCAACAAGUGUCCUCUCCUCGGCCUGAUUGGUGCCACAGUUUUCACAUUUUUUGCUUUUCGUUGGUGAUUUUGCCAUUUAAGAAAGCCUCAAGCAUGGAGCUCCCUAAGCACAAGGAGGCGGUGACGUGUCUUGCAGAGAAAAUGCAUGUGUGAGAUGAGCUUGGUUCAGGCCGCAGUGACAGUGCUGGCGGCCGUGGGUUUCGUGUUAAUGAAUCAAUCAUACGUAGUCAAUAAGGUGUCUGUGAACAGAGCACGCGGAGAACAAGGUUAUGCACUGAUGGGUGGAUGACAACGUCAGGGCCAGAGGCUCCCAGGACCCUGAGCCGGCGUGUCCCCUAGGAGCAGUGGUUCCAUAUCCGCUAAUUCAGCACGUGCAGUAAAUGUAUAGAAUAUGACUUCACCAGUAUCGAGACUG2000000006ACUGAUUUCUCACGUUCCCGUGGCCUCCUGUUAGAACUGCAUGGUGAUGGCCGACCAGAACCAGGUGUGGGUUGGCUCGGAAGACUCCGUCAUCUACAUCAUCAACGUCCACAGCAUGUCCUGCAACAAGCAGCUCACAGCCCACUGCUCCAGUGUCACGGAUUUGAUUGUGCAGGACGGACAGGAGGCACCCAGCAACGUGUACUCGUGCAGCAUGGACGGCAUGGUGCUGGUGUGGAAUGUGAGCACACUGCAGGUGACCAGCCGCUUCCAGCUGCCGCGAGGUGGCCUGACGUCCAUCAGACUGCACGGCGGCCGCCUGUGGUGCUGCACAGGUAACAGCAUCAUGGUCAUGAAAAUGAAUGGAUCCCUCCAUCAAGAAUUGAAGAUUGAGGAGAACUUCAAAGACACCAGUACCUCCUUCCUGGCCUUCCAGCUCCUUCCUGAGGAGGAGCAGCUGUGGGCGGCCUGUGCAGGACGCAGCGAGGUUUACAUCUGGAGCCUGAAGGACCUGGCCCAGCCCCCGCAGAGGGUGCCCCUCGAGGACUGCUCUGAGAUCAACUGCAUGAUCCGGGUGAAGAAGCAGGUCUGGGUGGGCAGCCGAGGGCUGGGGCAGGGAACACCCAAGGGGAAAAUCUACGUGAUUGACGCCGAGAGGAAGACCGUGGAGAAGGAGCUGGUGGCGCACAUGGACACCGUGAGGACGCUGUGCUCGGCUGAGG2000000006ACAGAUACGUGCUGAGUGGGUCGGGCAGGGAGGAGGGGAAAGUCGCCAUUUGGAAAGGCGAAUAAACGUGGCUGAGUCUGCCAAGUGGA2000000006ACUGUGCCCUAUGUGUGGGG2000000006ACUGGCUGCCCCCUAGAGCCUGCCAGGAGCAGAAGCCUGGAGGGGUGGCAGGGCAGAGCAGCCCAGGCUCAGCAUGGAGCCCACUUACCGUGUGGCCAGCCGCGAGACCCAUGGCCACGCACCUUCUCUCAGGCCUUCGGGCCCCCUGGUUAAACUGCACCAAGGGUGUUUCCUGUUGGGGUGUGUCUCAGGCAGGCAGCUGCGUCUUGUUGGUGAUAACCUCUGCUGGGAGGUUACUUUGUUGCCUAGAAAGUUCUGGAAUCCACAACCAGGGGCUGGCACUGGAGCCAGCAGCUUGGCCGAGUCACAGGUGACCCGUGGCCCUCACGUCUCUGGUUUUACCUUUCCUUACUUCAUUCAUUCACUCACCCAGUCCUUACGAAUCACCGAGGAACACUGGGCUGAGCACAUGACAGGGAGCCUGGAGCCCCGGGGCCUCCAGCGAGGCCUGAGAAGGGUGGUUCGGGUAACCACUGUGGGCUCUCUCCCAUCACAGAAGGUGGACAGGGCCUACCCAGGUGGAGGGGACCACCCUGCGAUCAGGUGUUUGCGACAGGGGUUGGGCCAGCUGAGGCAAGCUGUCUUUUUUCCCUUUUCUUUUUAAUAGAUGCAACAUUUUUAUAAUAAUCCUAGAGACCUUUUUUCUACCAAAGAUCACAGACCAGAAAAAGUUCCAUCUAAAAUAUCAUGCCCAGGAAAGCACAUGGGAUCAAAAGUAAAAUAGCAUCAUGUGUGAUCUCGUCUUCCAGCGUGCCGCUCAGUUCCCCGAAUCCGUGUGCACACGUGUGAUCUCGUCUUCAGUGUGCCGCUCAGUUCCCUGAAUCCGUGUGCACACUGCGUAUGUGUACGCGCAGCAUGCUAUACUGA2000000006ACUCAACAAGAUCUUGGCUGUACAUAAAUAUUUGUAAAAGAG2000000006ACCCUUUGCACCUUUUUACUGUAAUGUUGAGACUUCAUUACUUAAAUGUUCUACGGAAGGUUCUGGUGUGGUUGUUGGAGCCGGAGGGAGCGUGUCAGCACGUGCUGAGGGCAUGGGGCCUGCCCCCUGGGCACCCAUCCACAAGCUGGGCCACGGAGCUCCAGCUUCUCAGG2000000006ACAAAGCCCCGGGGCUGGCGCAUCCUGAGGGUCUCUGGGGGUGUUUGCCAGGCUCCUGGGAUGGGCCGCUUUCAGAAGCCCUGCAGUGCCUCCAGAUGGAAAGGCGGGCCCGGCCUCCGGUUGGGUCUGCAUUUUGGAGAGUCCACACCACGGACCAGGUUUUCCCCCAAGGCUUGGCUUUGUGUAGCUACUAACUUCUUGGGGCAUUCUGAGAGUGUGGGCAGAGAGAAUUAUGUGGCCUCAUCCUCCCCCAAGGCUGUGCUUGCAGCCCGGGCACCUUCCCACUUUCUAGCUCUGGAGAGGUUGGAUUUUGCUUUUGUAAACACAUGAAUCCUUAUGAUAAAAGUCUGUCAGUCAAAAAUACAUUUAUAAAUUAUUUAAUGCCAGUCCUCAUGUAACCUCAGGUAUCUUCAGCUUGUGGAGAAUAAAUCUGGUUUAAUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	604	1326	1415	1435	2302	2344	2517
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	8:141188952:+	8:141194169:+	8:141194258:+	8:141194278:+	8:141195145:+	8:141195187:+	8:141195360:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv jNkxUQNx8GRd VL7zkHvkfkoB	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	VyCX26p5UBRL WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn