Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000528814
Gene ID: ENSG00000147535
Gene Name: PLPP5
Sequence (UNICHARACTER ENCODING) CAGCGCAGCGUCGCUCGGAGCUCGCGGCCGGAUGGGGAAGGCGGCGGCGGCGGUGGCCUUUGGGGCCGAAGUGGGCGUGCGGCUCGCGCUGUUCGCGGCCUUCCUGGUGACGGAGCUGCUCCCCCCGUUCCAGAGACUCAPCCAGCCGGAGGAGAUGUGGCUCUACCGGAACCCCUACGUGGAGGCGGAGUAUUUCCCCACCAAGCCGAUGUUUGUGCGUGGAGAAAGAUCGUCUUUCCUCCCUCCCCAUGACCCGGCUUCCCGCGGGCACCUGUGCGUUUUCCACCCCGAGACGGCCUUUGUAGGGACCCACUGCCCACUCCGCUGCUGUGCGCUGGGUUCCGCCUCCUAGGGCUCGAGUGUUUAAGAUCCUGAUUGAGAGAGGAGGGUGUCCGAGCCUCUUUGGGCUGAGACAACGUUUUCCCGGGCGCUCUGUGCCUCAGCCUGAGGUACCGGGGCCCGAGCCGCACGGGCGCUGCUGUUCACUGGUGGCGCUGCCUGGCGCCCGGUUACGCGCACUCAGAGЖCCUUAUGUUAGCUCCAGUGAGUCCUGCUGUGUCACAUCCCUCUUUCCUGUAGGAGCACGAGUGUGGCUUUUUUUUGGAUUGUUUUUAACCUCUGACAUUCUGAUUCAGGUUAUUGCAUUUCUCUCUCCACUGUCUCUGAUCUUCCUGGCCAAAUUUCUCAAGAAGGCAGACACAAGAGACAGCAGACAAGCCUGCCUGGGUGAGCGCUAGCCCUUUCGGGCCGGUUUCUUCGUGCUGGGAACCUAGGAGGUCGUUGUGGGAUUCAGCCACGGUGAGCCUGUGUGGAGGCCACUGAGUUCUGCAUUCCUAAAGGAACUCUAUCCCCGCGGGAGAGGAAAAUAGCACUGCAGGGACUUGGUUACGCAGGCUACACGGCAGGCAGCCCUGUGCCUAAAUGCACUGGGUUAUUUGUACCUCAGAAAUGUCUUUGGCCUAGUACAAAAGUUCUCGGCUACAAAAGAGUGAUCACUGAGGACCCUAAUUAUUUUUGUGCCCAGGCCUGGUUGGAUUCUAUCCAUCUCAGAAACAGCACGGCUGCUCUCAUAACGAGGCCAUGACCAUACCUUUCCUCCUAGACAGAUCCUUUCAACUAAUGGCUUUGCUUUGCAGCUGCCAGCCUUGCCCUGGCUCUGAAUGGCGUCUPUACCAACACAAUAAAACUGAUCGUAGGGAGGCCACGCCCAGAUUUCUUCUACCGCUGCUUCCCUGAUGGGCUAGCCCAUUCUGACUUGAUGUGUACAGGGGAUAAGGACGUGGUGAAUGAGGGCCGAAAGAGCUUCCCCAGUGGACAUUCUUCCUGUAUGAAUAUCAUAUGGЖCUCUACCCUAUGCUUGUUUUCACAUCAUUGAAUUUAACCUAGAAAGCUAGUAGGGAUGGGAAAAUCUGACUACUCUUGUUUCUACAAUUUGGAAAAUCCCCCCUUCUPUAGUAACUCCACAGUUUAACAAGUCUGAGCCUUGACUAUUUGGGUAAAUAUUACAGAACAGAAAGGUAGUUUACCUUCAUGAGAUUUGCACAUUUAAUUGUUAUAUUAUUUGCCUAGAUCCUGCAAUCUUGUACUAGCAA
Sequence (SHORT NAMES ENCODING) CAGCGCAGCGUCGCUCGGAGCUCGCGGCCGGAUGGGGAAGGCGGCGGCGGCGGUGGCCUUUGGGGCCGAAGUGGGCGUGCGGCUCGCGCUGUUCGCGGCCUUCCUGGUGACGGAGCUGCUCCCCCCGUUCCAGAGACUCAYCCAGCCGGAGGAGAUGUGGCUCUACCGGAACCCCUACGUGGAGGCGGAGUAUUUCCCCACCAAGCCGAUGUUUGUGCGUGGAGAAAGAUCGUCUUUCCUCCCUCCCCAUGACCCGGCUUCCCGCGGGCACCUGUGCGUUUUCCACCCCGAGACGGCCUUUGUAGGGACCCACUGCCCACUCCGCUGCUGUGCGCUGGGUUCCGCCUCCUAGGGCUCGAGUGUUUAAGAUCCUGAUUGAGAGAGGAGGGUGUCCGAGCCUCUUUGGGCUGAGACAACGUUUUCCCGGGCGCUCUGUGCCUCAGCCUGAGGUACCGGGGCCCGAGCCGCACGGGCGCUGCUGUUCACUGGUGGCGCUGCCUGGCGCCCGGUUACGCGCACUCAGAGm6ACCUUAUGUUAGCUCCAGUGAGUCCUGCUGUGUCACAUCCCUCUUUCCUGUAGGAGCACGAGUGUGGCUUUUUUUUGGAUUGUUUUUAACCUCUGACAUUCUGAUUCAGGUUAUUGCAUUUCUCUCUCCACUGUCUCUGAUCUUCCUGGCCAAAUUUCUCAAGAAGGCAGACACAAGAGACAGCAGACAAGCCUGCCUGGGUGAGCGCUAGCCCUUUCGGGCCGGUUUCUUCGUGCUGGGAACCUAGGAGGUCGUUGUGGGAUUCAGCCACGGUGAGCCUGUGUGGAGGCCACUGAGUUCUGCAUUCCUAAAGGAACUCUAUCCCCGCGGGAGAGGAAAAUAGCACUGCAGGGACUUGGUUACGCAGGCUACACGGCAGGCAGCCCUGUGCCUAAAUGCACUGGGUUAUUUGUACCUCAGAAAUGUCUUUGGCCUAGUACAAAAGUUCUCGGCUACAAAAGAGUGAUCACUGAGGACCCUAAUUAUUUUUGUGCCCAGGCCUGGUUGGAUUCUAUCCAUCUCAGAAACAGCACGGCUGCUCUCAUAACGAGGCCAUGACCAUACCUUUCCUCCUAGACAGAUCCUUUCAACUAAUGGCUUUGCUUUGCAGCUGCCAGCCUUGCCCUGGCUCUGAAUGGCGUCUYUACCAACACAAUAAAACUGAUCGUAGGGAGGCCACGCCCAGAUUUCUUCUACCGCUGCUUCCCUGAUGGGCUAGCCCAUUCUGACUUGAUGUGUACAGGGGAUAAGGACGUGGUGAAUGAGGGCCGAAAGAGCUUCCCCAGUGGACAUUCUUCCUGUAUGAAUAUCAUAUGGm6ACUCUACCCUAUGCUUGUUUUCACAUCAUUGAAUUUAACCUAGAAAGCUAGUAGGGAUGGGAAAAUCUGACUACUCUUGUUUCUACAAUUUGGAAAAUCCCCCCUUCUYUAGUAACUCCACAGUUUAACAAGUCUGAGCCUUGACUAUUUGGGUAAAUAUUACAGAACAGAAAGGUAGUUUACCUUCAUGAGAUUUGCACAUUUAAUUGUUAUAUUAUUUGCCUAGAUCCUGCAAUCUUGUACUAGCAA
Sequence (MODOMICS CODE ENCODING) CAGCGCAGCGUCGCUCGGAGCUCGCGGCCGGAUGGGGAAGGCGGCGGCGGCGGUGGCCUUUGGGGCCGAAGUGGGCGUGCGGCUCGCGCUGUUCGCGGCCUUCCUGGUGACGGAGCUGCUCCCCCCGUUCCAGAGACUCA2000000009UCCAGCCGGAGGAGAUGUGGCUCUACCGGAACCCCUACGUGGAGGCGGAGUAUUUCCCCACCAAGCCGAUGUUUGUGCGUGGAGAAAGAUCGUCUUUCCUCCCUCCCCAUGACCCGGCUUCCCGCGGGCACCUGUGCGUUUUCCACCCCGAGACGGCCUUUGUAGGGACCCACUGCCCACUCCGCUGCUGUGCGCUGGGUUCCGCCUCCUAGGGCUCGAGUGUUUAAGAUCCUGAUUGAGAGAGGAGGGUGUCCGAGCCUCUUUGGGCUGAGACAACGUUUUCCCGGGCGCUCUGUGCCUCAGCCUGAGGUACCGGGGCCCGAGCCGCACGGGCGCUGCUGUUCACUGGUGGCGCUGCCUGGCGCCCGGUUACGCGCACUCAGAG2000000006ACCUUAUGUUAGCUCCAGUGAGUCCUGCUGUGUCACAUCCCUCUUUCCUGUAGGAGCACGAGUGUGGCUUUUUUUUGGAUUGUUUUUAACCUCUGACAUUCUGAUUCAGGUUAUUGCAUUUCUCUCUCCACUGUCUCUGAUCUUCCUGGCCAAAUUUCUCAAGAAGGCAGACACAAGAGACAGCAGACAAGCCUGCCUGGGUGAGCGCUAGCCCUUUCGGGCCGGUUUCUUCGUGCUGGGAACCUAGGAGGUCGUUGUGGGAUUCAGCCACGGUGAGCCUGUGUGGAGGCCACUGAGUUCUGCAUUCCUAAAGGAACUCUAUCCCCGCGGGAGAGGAAAAUAGCACUGCAGGGACUUGGUUACGCAGGCUACACGGCAGGCAGCCCUGUGCCUAAAUGCACUGGGUUAUUUGUACCUCAGAAAUGUCUUUGGCCUAGUACAAAAGUUCUCGGCUACAAAAGAGUGAUCACUGAGGACCCUAAUUAUUUUUGUGCCCAGGCCUGGUUGGAUUCUAUCCAUCUCAGAAACAGCACGGCUGCUCUCAUAACGAGGCCAUGACCAUACCUUUCCUCCUAGACAGAUCCUUUCAACUAAUGGCUUUGCUUUGCAGCUGCCAGCCUUGCCCUGGCUCUGAAUGGCGUCU2000000009UUACCAACACAAUAAAACUGAUCGUAGGGAGGCCACGCCCAGAUUUCUUCUACCGCUGCUUCCCUGAUGGGCUAGCCCAUUCUGACUUGAUGUGUACAGGGGAUAAGGACGUGGUGAAUGAGGGCCGAAAGAGCUUCCCCAGUGGACAUUCUUCCUGUAUGAAUAUCAUAUGG2000000006ACUCUACCCUAUGCUUGUUUUCACAUCAUUGAAUUUAACCUAGAAAGCUAGUAGGGAUGGGAAAAUCUGACUACUCUUGUUUCUACAAUUUGGAAAAUCCCCCCUUCU2000000009UUAGUAACUCCACAGUUUAACAAGUCUGAGCCUUGACUAUUUGGGUAAAUAUUACAGAACAGAAAGGUAGUUUACCUUCAUGAGAUUUGCACAUUUAAUUGUUAUAUUAUUUGCCUAGAUCCUGCAAUCUUGUACUAGCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 141 526 1169 1342 1450
Modification Positions Y m6A Y m6A Y
Genomic Coordinates 8:38268955:- 8:38268570:- 8:38267927:- 8:38267249:- 8:38267141:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5Nnepx5V7yHo
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
WiQcrNTGZHPT
bXBqJigD9oV3
Yfn77uLS5tv8
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8