General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000303202
Gene ID:	ENSG00000168333
Gene Name:	PPDPFL
Sequence (UNICHARACTER ENCODING)	CACUGGCCCUGCGUAUGUGGUGCAGCCUCUCUUCAAUCCCUAAGAACUGGUUCUUUCAAAGCAUGUAUUUUCUGAAGAAACUPUAGAACCACGUUUAUUUUAAAAGAACGAAUUGGAGAAAACAAAUCGAUUAAUGCUCACAGCUUCUUGGGUGCUUUCUCACGGGUAAAGCCAUGGCAPCCGUACCUUCCAUUGGUUGCCUUCUAGCCAGAAAUCAGUAUUAUCGAAAGUCCAGUGUUUCUUCAGUUAGUUCUPUAЖCUAGCUCUGAUUCUGUUAЖCUUCAUAGAUGACGACAAACCACAGCAAGGGUUGCCUGAAGUGGCAGAAUCCACCUGGUGGUUUAAAUCGUUUUUCCAUUCUGAACCUGUGCUUUCAAAUGUGAGAAUAAAAGAUCUGUCUGCUACUGGGUCGCUGUCAGGAAGAUCAUAGCACCCUUUCCAGUUCAAUCACUCAAGAGUGGUGGAGAAGUCAUAUGCCAAACUGUGUCAUUGUUUGGCGGGGGAUGGACUGAGAAUCAGAGGAAAGGGUCUAAAUUUGUUUUGCUCAUACCUUCAGGAAAAGAAUAACCAUUGUCUAGUUGUUGUCUUAAAUAACCUUAGGAUAACACUGCUGAUUUUGAUUAGCUUCUGUGUGGUGCAAAUUACUAGACAGGUUGAAUUGGGAGUUUGUGUGCAGUUGUUUUCAGACAUUUUGAACUCAAACACACUGACUAGCACAGUUGUAAUUUAAUAUAUUUAAACUACUUAUUUUGGAUUUUAGACAUUUGAAUGCCUAGUAACUAAAUGGAAUAGAAAGAAUCUAUAAUAAAGGGAUUCAUAGAUGCCAAUGUUGAAAUAUAGUGAUUCUGAUGAAUUUCCUAUCUAAGACAAAUUUAGAAUCAUUAUUUAAAAUUAGAAUCAUUAUUUAAAGUAUUUUUAAAAGCCAAUGCAAGAUUGAUUGUUGGAAAGAUGUUUUCUUGACACUCUUUAUCAAGUUUAUUCAUUUGAAUUAUCUGGACAGUGUUUCAUUUAUUUAUCCCCUCCUCUCUGACUACUAUAAAAUCAACCCAGAUUACAGAUGAGCACUUUGUAGCUGAUCAUCUUUGCACUGCCAUUUGAUGAACAUGUUGGUAACGGUUGCCUGCCUUAUGUAGCAUGAACAGUUGAUUCUGACAAUCAAGAUCCUCUGCCUGCUGCAGUGGUCCAUACAUGAACAGCUCCCCUUCAGCGCCCCAGCUAUUCCAGGЖCUCUUCUCCAUUGUAAGAAGACAGAAAUGUGUCUGAGAUCUCAUUUAUGAGACAAGAUCACAGCAGCCACUGAUAUAAAAAAAGUUUAGGCAUUUUUCUCAACACAAAGЖCUAUCGCUGGAAGUGGCACUUGCUACCUGGUGCAUCUUUGAAAAGUGUGCCUPUAGAAЖCAAGACACCCUUUUAAAGUAAUAUGUCUUCAAAUGUUGUGACUUACAUAAAGUAGCUCUUUCAUUUUUUAUAUCAUUUUUAUUAAAAAAЖCUUAAGUUAGACUCUU
Sequence (SHORT NAMES ENCODING)	CACUGGCCCUGCGUAUGUGGUGCAGCCUCUCUUCAAUCCCUAAGAACUGGUUCUUUCAAAGCAUGUAUUUUCUGAAGAAACUYUAGAACCACGUUUAUUUUAAAAGAACGAAUUGGAGAAAACAAAUCGAUUAAUGCUCACAGCUUCUUGGGUGCUUUCUCACGGGUAAAGCCAUGGCAYCCGUACCUUCCAUUGGUUGCCUUCUAGCCAGAAAUCAGUAUUAUCGAAAGUCCAGUGUUUCUUCAGUUAGUUCUYUAm6ACUAGCUCUGAUUCUGUUAm6ACUUCAUAGAUGACGACAAACCACAGCAAGGGUUGCCUGAAGUGGCAGAAUCCACCUGGUGGUUUAAAUCGUUUUUCCAUUCUGAACCUGUGCUUUCAAAUGUGAGAAUAAAAGAUCUGUCUGCUACUGGGUCGCUGUCAGGAAGAUCAUAGCACCCUUUCCAGUUCAAUCACUCAAGAGUGGUGGAGAAGUCAUAUGCCAAACUGUGUCAUUGUUUGGCGGGGGAUGGACUGAGAAUCAGAGGAAAGGGUCUAAAUUUGUUUUGCUCAUACCUUCAGGAAAAGAAUAACCAUUGUCUAGUUGUUGUCUUAAAUAACCUUAGGAUAACACUGCUGAUUUUGAUUAGCUUCUGUGUGGUGCAAAUUACUAGACAGGUUGAAUUGGGAGUUUGUGUGCAGUUGUUUUCAGACAUUUUGAACUCAAACACACUGACUAGCACAGUUGUAAUUUAAUAUAUUUAAACUACUUAUUUUGGAUUUUAGACAUUUGAAUGCCUAGUAACUAAAUGGAAUAGAAAGAAUCUAUAAUAAAGGGAUUCAUAGAUGCCAAUGUUGAAAUAUAGUGAUUCUGAUGAAUUUCCUAUCUAAGACAAAUUUAGAAUCAUUAUUUAAAAUUAGAAUCAUUAUUUAAAGUAUUUUUAAAAGCCAAUGCAAGAUUGAUUGUUGGAAAGAUGUUUUCUUGACACUCUUUAUCAAGUUUAUUCAUUUGAAUUAUCUGGACAGUGUUUCAUUUAUUUAUCCCCUCCUCUCUGACUACUAUAAAAUCAACCCAGAUUACAGAUGAGCACUUUGUAGCUGAUCAUCUUUGCACUGCCAUUUGAUGAACAUGUUGGUAACGGUUGCCUGCCUUAUGUAGCAUGAACAGUUGAUUCUGACAAUCAAGAUCCUCUGCCUGCUGCAGUGGUCCAUACAUGAACAGCUCCCCUUCAGCGCCCCAGCUAUUCCAGGm6ACUCUUCUCCAUUGUAAGAAGACAGAAAUGUGUCUGAGAUCUCAUUUAUGAGACAAGAUCACAGCAGCCACUGAUAUAAAAAAAGUUUAGGCAUUUUUCUCAACACAAAGm6ACUAUCGCUGGAAGUGGCACUUGCUACCUGGUGCAUCUUUGAAAAGUGUGCCUYUAGAAm6ACAAGACACCCUUUUAAAGUAAUAUGUCUUCAAAUGUUGUGACUUACAUAAAGUAGCUCUUUCAUUUUUUAUAUCAUUUUUAUUAAAAAAm6ACUUAAGUUAGACUCUU
Sequence (MODOMICS CODE ENCODING)	CACUGGCCCUGCGUAUGUGGUGCAGCCUCUCUUCAAUCCCUAAGAACUGGUUCUUUCAAAGCAUGUAUUUUCUGAAGAAACU2000000009UUAGAACCACGUUUAUUUUAAAAGAACGAAUUGGAGAAAACAAAUCGAUUAAUGCUCACAGCUUCUUGGGUGCUUUCUCACGGGUAAAGCCAUGGCA2000000009UCCGUACCUUCCAUUGGUUGCCUUCUAGCCAGAAAUCAGUAUUAUCGAAAGUCCAGUGUUUCUUCAGUUAGUUCU2000000009UUA2000000006ACUAGCUCUGAUUCUGUUA2000000006ACUUCAUAGAUGACGACAAACCACAGCAAGGGUUGCCUGAAGUGGCAGAAUCCACCUGGUGGUUUAAAUCGUUUUUCCAUUCUGAACCUGUGCUUUCAAAUGUGAGAAUAAAAGAUCUGUCUGCUACUGGGUCGCUGUCAGGAAGAUCAUAGCACCCUUUCCAGUUCAAUCACUCAAGAGUGGUGGAGAAGUCAUAUGCCAAACUGUGUCAUUGUUUGGCGGGGGAUGGACUGAGAAUCAGAGGAAAGGGUCUAAAUUUGUUUUGCUCAUACCUUCAGGAAAAGAAUAACCAUUGUCUAGUUGUUGUCUUAAAUAACCUUAGGAUAACACUGCUGAUUUUGAUUAGCUUCUGUGUGGUGCAAAUUACUAGACAGGUUGAAUUGGGAGUUUGUGUGCAGUUGUUUUCAGACAUUUUGAACUCAAACACACUGACUAGCACAGUUGUAAUUUAAUAUAUUUAAACUACUUAUUUUGGAUUUUAGACAUUUGAAUGCCUAGUAACUAAAUGGAAUAGAAAGAAUCUAUAAUAAAGGGAUUCAUAGAUGCCAAUGUUGAAAUAUAGUGAUUCUGAUGAAUUUCCUAUCUAAGACAAAUUUAGAAUCAUUAUUUAAAAUUAGAAUCAUUAUUUAAAGUAUUUUUAAAAGCCAAUGCAAGAUUGAUUGUUGGAAAGAUGUUUUCUUGACACUCUUUAUCAAGUUUAUUCAUUUGAAUUAUCUGGACAGUGUUUCAUUUAUUUAUCCCCUCCUCUCUGACUACUAUAAAAUCAACCCAGAUUACAGAUGAGCACUUUGUAGCUGAUCAUCUUUGCACUGCCAUUUGAUGAACAUGUUGGUAACGGUUGCCUGCCUUAUGUAGCAUGAACAGUUGAUUCUGACAAUCAAGAUCCUCUGCCUGCUGCAGUGGUCCAUACAUGAACAGCUCCCCUUCAGCGCCCCAGCUAUUCCAGG2000000006ACUCUUCUCCAUUGUAAGAAGACAGAAAUGUGUCUGAGAUCUCAUUUAUGAGACAAGAUCACAGCAGCCACUGAUAUAAAAAAAGUUUAGGCAUUUUUCUCAACACAAAG2000000006ACUAUCGCUGGAAGUGGCACUUGCUACCUGGUGCAUCUUUGAAAAGUGUGCCU2000000009UUAGAA2000000006ACAAGACACCCUUUUAAAGUAAUAUGUCUUCAAAUGUUGUGACUUACAUAAAGUAGCUCUUUCAUUUUUUAUAUCAUUUUUAUUAAAAAA2000000006ACUUAAGUUAGACUCUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	83	180	255	258	277	1224	1334	1387	1393	1483
Modification Positions	Y	Y	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	8:49072436:+	8:49072837:+	8:49074085:+	8:49074088:+	8:49074107:+	8:49075327:+	8:49075437:+	8:49075490:+	8:49075496:+	8:49075586:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ