General Data

RNA Type	tRNA
SOTerm	SO:0000267
Original Source	tdbR00000063
Secondary Structure	(((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GCCGCCUUAGCUCA(ACUGGGAGAGCACUCGACUGAAKAPCGAGCUGU?CCCGG]PBOAAUCCGGGAGGCGGCACCA
Sequence (SHORT NAMES ENCODING)	GCCGCCUUAGCUCApG+ACUGGGAGAGCACUCGACUGAApm1GApYCGAGCUGUpm5CCCCGGpm1YpYpCmpm1IAAUCCGGGAGGCGGCACCA
Sequence (MODOMICS CODE ENCODING)	GCCGCCUUAGCUCA2000103551GACUGGGAGAGCACUCGACUGAA2000001551GA2000009551UCGAGCUGU2000005551CCCCGG2000019551U2000009551U2000090551C2000019551AAAUCCGGGAGGCGGCACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GCCGCCUUAGCUCA(ACUGGG--AGAGCACUCGACUGAAKAPCGAGCUGU?-------------------CCCGG]PBOAAUCCGGGAGGCGGCACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	15	37	39	45C	54	55	56	57
Position in the sequence	15	38	40	49	55	56	57	58
Modification positions	G+	m1G	Y	m5C	m1Y	Y	Cm	m1I
Level of Experimental Evidence	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS