General Data

RNA Type	pseudogene
Original Source	Sci-ModoM
Transcript ID:	ENST00000248151
Gene ID:	ENSG00000127589
Gene Name:	TUBBP1
Sequence (UNICHARACTER ENCODING)	AUGAGGGAAAUCGUGCACAUCCAGGCUGGUCAGCGUGGCAACCAGAUCGGUGCCAAGUUCUGGGAGGUGAUCAGUGAUGAACAUGGCAUCGACCCCACUGGCACCUACCACGGGGACAGCGACCUGCAGCUGGACCGCAUCUCCGUGUACUACAGUGAAGCCACUGAUGGCAAAUAUGUUCCUCGUGCCAUACUGGUGGAUCUAGAACCUGGGACCAUGGACUCUGUUCGCUCAGGUCCUUUUGGCCAGAUCUUUAGACCAGACAACUUUGUAUUUGGUCAGUCUGGGGCAGGUAACAACUGGGCCAAAGGCCACUACACAGAGGGCGCCGAGCUGGUUGAUUCUGUCCUGGAUGUGGUACGGAAGGAGGCAGAGAGCUGUGACUGCCUGCAGGGCUUCCAGCUCACCCACUCACUGGGUGGGGGCACAGGCUCUGGAAUGGGCACUCUCCUUAUCAGCAAGAUCCGAGAAGAAUACCCUGAUCGCAUCAUGAAUACCUUCAGUGUGGUGCCUUCACCCAAAGUGUCUGACACCGUGAUCGAGUCCUACAAUGCUACCCUCUCCGUCCAUCAGUUGGUAGAGAACACUGAUGAGACCUAUUGCAUUGACAACGAGGCCCUCUAUGAUAUCUGCUUCCGCACUCUGAGGGUGACCACACCAACCUAUGGGGAUCUGAACCACCUCCUCUAAGACACCAUGAGUGGUGUCACCACCUGCCUCCGCUUCCCUGGCCAGCUCAAUGCUGACCUCUGCAAGUUGGCAGUUAACAUGGUCCCCUUCCCACGUCUCCAUUUCUUUAUGCCUGGCUUUGCCCCUCUCACCAGCCAUGGAAGCCAGCAGUAUCGAGCUCUCACAGUGCCGGAЖCUCACCCAGCAGGUCUUCGAUGCCAAGAGCAUGAUGGCUGCCUGUGACCCCCGCCACGGCCGAUACCUCACCGUGGCUGCUGЖCUUCCGUGGUCGGAUGUCCAUGAAGGAGGUCGAUGAGCAGAUGUUUAACGUGCAGAACAAGAACAGCAGCUACUUUGUGGAAUGGAUCCCCAACAAUAUCAAGACAGCUGUCUGUGACAUCCCACCUCGUGGCCUCAAGAUGGCAGUCACCUUCAUCGGCAGUAGCACGGCCAUCCAGGAGCUCUUCAAGCACAUCUCGGAGCAGUUCACUGCCAUGUUCCGCCGGAAGGCCUUCCUCCACUGGUACACAGGCGAGGGCAUGGACGAGAUGGAGUUCACCGAGGCUGACAGCAACAUGAACGACCUCGUCUCUGAGUAUCAGCAGUACCAGGAUGCCACCGCAGAAGAGGAGGAGGAUUUCGGUGAGGAGGCCAAAGAGGAGGCCUAA
Sequence (SHORT NAMES ENCODING)	AUGAGGGAAAUCGUGCACAUCCAGGCUGGUCAGCGUGGCAACCAGAUCGGUGCCAAGUUCUGGGAGGUGAUCAGUGAUGAACAUGGCAUCGACCCCACUGGCACCUACCACGGGGACAGCGACCUGCAGCUGGACCGCAUCUCCGUGUACUACAGUGAAGCCACUGAUGGCAAAUAUGUUCCUCGUGCCAUACUGGUGGAUCUAGAACCUGGGACCAUGGACUCUGUUCGCUCAGGUCCUUUUGGCCAGAUCUUUAGACCAGACAACUUUGUAUUUGGUCAGUCUGGGGCAGGUAACAACUGGGCCAAAGGCCACUACACAGAGGGCGCCGAGCUGGUUGAUUCUGUCCUGGAUGUGGUACGGAAGGAGGCAGAGAGCUGUGACUGCCUGCAGGGCUUCCAGCUCACCCACUCACUGGGUGGGGGCACAGGCUCUGGAAUGGGCACUCUCCUUAUCAGCAAGAUCCGAGAAGAAUACCCUGAUCGCAUCAUGAAUACCUUCAGUGUGGUGCCUUCACCCAAAGUGUCUGACACCGUGAUCGAGUCCUACAAUGCUACCCUCUCCGUCCAUCAGUUGGUAGAGAACACUGAUGAGACCUAUUGCAUUGACAACGAGGCCCUCUAUGAUAUCUGCUUCCGCACUCUGAGGGUGACCACACCAACCUAUGGGGAUCUGAACCACCUCCUCUAAGACACCAUGAGUGGUGUCACCACCUGCCUCCGCUUCCCUGGCCAGCUCAAUGCUGACCUCUGCAAGUUGGCAGUUAACAUGGUCCCCUUCCCACGUCUCCAUUUCUUUAUGCCUGGCUUUGCCCCUCUCACCAGCCAUGGAAGCCAGCAGUAUCGAGCUCUCACAGUGCCGGAm6ACUCACCCAGCAGGUCUUCGAUGCCAAGAGCAUGAUGGCUGCCUGUGACCCCCGCCACGGCCGAUACCUCACCGUGGCUGCUGm6ACUUCCGUGGUCGGAUGUCCAUGAAGGAGGUCGAUGAGCAGAUGUUUAACGUGCAGAACAAGAACAGCAGCUACUUUGUGGAAUGGAUCCCCAACAAUAUCAAGACAGCUGUCUGUGACAUCCCACCUCGUGGCCUCAAGAUGGCAGUCACCUUCAUCGGCAGUAGCACGGCCAUCCAGGAGCUCUUCAAGCACAUCUCGGAGCAGUUCACUGCCAUGUUCCGCCGGAAGGCCUUCCUCCACUGGUACACAGGCGAGGGCAUGGACGAGAUGGAGUUCACCGAGGCUGACAGCAACAUGAACGACCUCGUCUCUGAGUAUCAGCAGUACCAGGAUGCCACCGCAGAAGAGGAGGAGGAUUUCGGUGAGGAGGCCAAAGAGGAGGCCUAA
Sequence (MODOMICS CODE ENCODING)	AUGAGGGAAAUCGUGCACAUCCAGGCUGGUCAGCGUGGCAACCAGAUCGGUGCCAAGUUCUGGGAGGUGAUCAGUGAUGAACAUGGCAUCGACCCCACUGGCACCUACCACGGGGACAGCGACCUGCAGCUGGACCGCAUCUCCGUGUACUACAGUGAAGCCACUGAUGGCAAAUAUGUUCCUCGUGCCAUACUGGUGGAUCUAGAACCUGGGACCAUGGACUCUGUUCGCUCAGGUCCUUUUGGCCAGAUCUUUAGACCAGACAACUUUGUAUUUGGUCAGUCUGGGGCAGGUAACAACUGGGCCAAAGGCCACUACACAGAGGGCGCCGAGCUGGUUGAUUCUGUCCUGGAUGUGGUACGGAAGGAGGCAGAGAGCUGUGACUGCCUGCAGGGCUUCCAGCUCACCCACUCACUGGGUGGGGGCACAGGCUCUGGAAUGGGCACUCUCCUUAUCAGCAAGAUCCGAGAAGAAUACCCUGAUCGCAUCAUGAAUACCUUCAGUGUGGUGCCUUCACCCAAAGUGUCUGACACCGUGAUCGAGUCCUACAAUGCUACCCUCUCCGUCCAUCAGUUGGUAGAGAACACUGAUGAGACCUAUUGCAUUGACAACGAGGCCCUCUAUGAUAUCUGCUUCCGCACUCUGAGGGUGACCACACCAACCUAUGGGGAUCUGAACCACCUCCUCUAAGACACCAUGAGUGGUGUCACCACCUGCCUCCGCUUCCCUGGCCAGCUCAAUGCUGACCUCUGCAAGUUGGCAGUUAACAUGGUCCCCUUCCCACGUCUCCAUUUCUUUAUGCCUGGCUUUGCCCCUCUCACCAGCCAUGGAAGCCAGCAGUAUCGAGCUCUCACAGUGCCGGA2000000006ACUCACCCAGCAGGUCUUCGAUGCCAAGAGCAUGAUGGCUGCCUGUGACCCCCGCCACGGCCGAUACCUCACCGUGGCUGCUG2000000006ACUUCCGUGGUCGGAUGUCCAUGAAGGAGGUCGAUGAGCAGAUGUUUAACGUGCAGAACAAGAACAGCAGCUACUUUGUGGAAUGGAUCCCCAACAAUAUCAAGACAGCUGUCUGUGACAUCCCACCUCGUGGCCUCAAGAUGGCAGUCACCUUCAUCGGCAGUAGCACGGCCAUCCAGGAGCUCUUCAAGCACAUCUCGGAGCAGUUCACUGCCAUGUUCCGCCGGAAGGCCUUCCUCCACUGGUACACAGGCGAGGGCAUGGACGAGAUGGAGUUCACCGAGGCUGACAGCAACAUGAACGACCUCGUCUCUGAGUAUCAGCAGUACCAGGAUGCCACCGCAGAAGAGGAGGAGGAUUUCGGUGAGGAGGCCAAAGAGGAGGCCUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	864	947
Modification Positions	m6A	m6A
Genomic Coordinates	8:30352871:+	8:30352954:+
Level of Experimental Evidence	3	3
Level of Experimental Reliability	3	3
Source	Sci-ModoM	Sci-ModoM
EUFIDs	6AyXsheySjfx msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VyCX26p5UBRL