Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000517684
Gene ID: ENSG00000170881
Gene Name: RNF139
Sequence (UNICHARACTER ENCODING) AGUGGAUUGUGAAAUGCGUCUACUGUAAUAAUAUGCAAUGUCUUGAUUACCUGCUGAAAUAAGGUGUAUUUGCAPCCAGUAUUGUUCUGAUCUUGUCACAACGAUCACUUUUCAAGUUUUACACGUACAGCUCAGCCUUUCUGUUAGCUGCAACUUCAGUGUUGGUGAAUUAUUAUGCUUCUUUGCACAUUGЖCUUCUAUGGUGCCUACAACACGUCAGCUUUUGGAAUUGAGCUGCUUCCUCGAAAAGGUCCCUCGCUGUGGAUGGCACUUAUCGUUCUACAGCUAЖCAUUUGGAAUUGGAUACGUUACACUACUCCAGAUUCAUUCCAUCUAUUCACAAUUAAUUAUUUUGGAUCUCUUGGUUCCUGUAAUAGGCUUAAUCACAGAGCUACCAUUACACAUCAGAGAGЖCUPUACUGUUUACUUCUUCCUUGAUUCUCACAUUAAAUACAGUGUUUGUCCUGGCA
Sequence (SHORT NAMES ENCODING) AGUGGAUUGUGAAAUGCGUCUACUGUAAUAAUAUGCAAUGUCUUGAUUACCUGCUGAAAUAAGGUGUAUUUGCAYCCAGUAUUGUUCUGAUCUUGUCACAACGAUCACUUUUCAAGUUUUACACGUACAGCUCAGCCUUUCUGUUAGCUGCAACUUCAGUGUUGGUGAAUUAUUAUGCUUCUUUGCACAUUGm6ACUUCUAUGGUGCCUACAACACGUCAGCUUUUGGAAUUGAGCUGCUUCCUCGAAAAGGUCCCUCGCUGUGGAUGGCACUUAUCGUUCUACAGCUAm6ACAUUUGGAAUUGGAUACGUUACACUACUCCAGAUUCAUUCCAUCUAUUCACAAUUAAUUAUUUUGGAUCUCUUGGUUCCUGUAAUAGGCUUAAUCACAGAGCUACCAUUACACAUCAGAGAGm6ACUYUACUGUUUACUUCUUCCUUGAUUCUCACAUUAAAUACAGUGUUUGUCCUGGCA
Sequence (MODOMICS CODE ENCODING) AGUGGAUUGUGAAAUGCGUCUACUGUAAUAAUAUGCAAUGUCUUGAUUACCUGCUGAAAUAAGGUGUAUUUGCA2000000009UCCAGUAUUGUUCUGAUCUUGUCACAACGAUCACUUUUCAAGUUUUACACGUACAGCUCAGCCUUUCUGUUAGCUGCAACUUCAGUGUUGGUGAAUUAUUAUGCUUCUUUGCACAUUG2000000006ACUUCUAUGGUGCCUACAACACGUCAGCUUUUGGAAUUGAGCUGCUUCCUCGAAAAGGUCCCUCGCUGUGGAUGGCACUUAUCGUUCUACAGCUA2000000006ACAUUUGGAAUUGGAUACGUUACACUACUCCAGAUUCAUUCCAUCUAUUCACAAUUAAUUAUUUUGGAUCUCUUGGUUCCUGUAAUAGGCUUAAUCACAGAGCUACCAUUACACAUCAGAGAG2000000006ACU2000000009UUACUGUUUACUUCUUCCUUGAUUCUCACAUUAAAUACAGUGUUUGUCCUGGCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 75 193 288 411 414
Modification Positions Y m6A m6A m6A Y
Genomic Coordinates 8:124485842:+ 8:124485960:+ 8:124486055:+ 8:124486178:+ 8:124486181:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
aHkqKEJkRYyb
jNkxUQNx8GRd
msuJfBpJvM5H
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QmcpiJ88DBDn
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VL7zkHvkfkoB
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aJksAshEgQ8U
D6ncpa2PPWj3
8cMbzB4aD5Se
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KTLz8piFYdwC
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BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
Yfn77uLS5tv8
msuJfBpJvM5H
QmcpiJ88DBDn
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
KRfQJWH4K5KH
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
8cMbzB4aD5Se
BkoLW2CBToyL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8