Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000678997
Gene ID: ENSG00000147601
Gene Name: TERF1
Sequence (UNICHARACTER ENCODING) AGUACCCAAGCGAGCCAUUUAACAUGGCGGAGGAUGUUUCCUCAGCGGCCCCGAGCCCGCGGGGCUGUGCGGAUGGUAGGGAUGCCGACCCUACUGAGGAGCAGAUGGCAGAAACAGAGAGAAACGACGAGGAGCAGUUCGAAUGCCAGGAACUGCUCGAGUGCCAGGUGCAGGUGGGGGCCCCCGAGGAGGAGGAGGAGGAGGAGGAGGACGCGGGCCUGGUGGCCGAGGCCGAGGCCGUGGCUGCCGGCUGGAUGCUCGAUUUCCUCUGCCUCUCUCUUUGCCGAGCUUUCCGCGACGGCCGCUCCGAGGACUUCCGCAGGACCCGCAACAGCGCAGAGGAUUAAAACCUUCAUGGGGGCAGAGACUGGCUAUCUGAAGUCAUCACCUCCUAACACAGGCUGGCAGUAGAUGUUCACUAUUAUUCAUGGACUAUCCAGUCUAЖCAGCUUGCCAGUUGAGAACGAUAUACAUAUGUCAGUUUUUGACAAGAAUUGCAGCAGGAAAAACCCUUGAUGCACAGUUUGAAAAUGAUGAACGAAUUACACCCUUGGAAUCAGCCCUGAUGAUUUGGGGUUCAAUUGAAAAGGAACAUGACAAACUUCAUGAAGAAAUACAGAAUUUAAUUAAAAUUCAGGCUAUAGCUGUUUGUAUGGAAAAUGGCAACUPUAAAGAAGCAGAAGAAGUCUUUGAAAGAAUAUUUGGUGAUCCAAAUUCUCAUAUGCCUUUCAAAAGCAAAUUGCUUAUGAUAAUCUCUCAGAAAGAUACAUUUCAUUCCUUUUUUCAACACUUCAGCUACAACCACAUGAUGGAGAAAAUUAAGAGUUAUGUGAAUUAUGUGCUAAGUGAAAAAUCAUCAACCUUUCUAAUGAAGGCAGCGGCAAAAGUAGUAGAAAGCAAAAGGACAAGAACAAUAЖCUUCUCAAGAUAAACCUAGUGGUAAUGAUGUUGAAAUGGAAACUGAAGCUAAUUUGGAUACAAGAAAAAGGUCUCACAAGAAUCUUUUCUUAUCUAAGUUGCAACAUGGAACCCAGCAACAAGACCUUAAUAAGAAAGAAAGAAGAGUAGGAACUCCUCAAAGUACAAAAAAGAAAAAAGAAAGCAGAAGAGCCACUGAAAGCAGAAUACCUGUUUCAAAGAGUCAGCCGGUAACUCCUGAAAAACAUCGAGCUAGAAAAAGACAGGCAUGGCUUUGGGAAGAAGACAAGAAUUUGAGAUCUGGCGUGAGGAAAUAUGGAGAGGGAAACUGGUCUAAAAUACUGUUGCAUUAUAAAUUCAACAACCGGACAAGUGUCAUGUUAAAAGACAGAUGGAGGACCAUGAAGAAACUAAAACUGAUUUCCUCAGACAGCGAAGACUGAUUGUGUUUGUAAAAGCUUGAUGAAAGGЖCAGUUAAGUAUUUUGAUCACUGCAUUUUGUUUGAAACUUGUGUCAUUGAUGUAAUUUAAAACUUUUGUUUAAAGCAUUACAGUAUUUUUCUGUGACCAUCAAUUAAUGAGGGUUUGUGCUACCAGAGUUAAAGCAUAUGCUAUCAUUGUAUUCUPUAAGAACCUUAUUUUGAUAAAAUGUAAAUUUGUUGAACCCUGCCACAUUUAGUAUCCCCACCCCCAAAUCCUGUUCCAAUGAAAAAAUUAAAACCUGAUACGAAAAAAAAAAAAUUCCAGUUAACCUAUUUUGUGUCUGUAGGCUGACCUCAACCCUGUAACGUAACCCAUUAAAAUGAAUUUCUUUUUUUUUAAGACAGAGUUUCUCUCUGUUGCCCAGGCUGGAGUGCAGUGGCGCAAUUUCAGCUCACUGCAACCUCUGCCUCCCAGGUUCAAGUGAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCACACACCACCACGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGGCGGGGUUUCACCAUGCUGGUCAGGAUGUUCUCCAACUCCUGACUUCAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGAGAUUACAGACGUGAGCCACUGCGUCCUGCCUAAAAUGAAUUUUCUAGAUGAUUGAAUAACAGUAGUCCUUUGAUAGAAGAUAAUGACUUGGUUUAUGGCCUUAAUAUACUACUUAAUUACUUAAGAUGUUUAUUAAUAGAAUGAUAAAUGUACAGAGUAACCUAUAAGCAUGACAUACUUUUGCUUUCAGUAGUUUCAUGUAAAGAAAAAAACUUGAAAAUAGUAAUACCUGAGUACCCAUGGGAAUAAUAGACACUGGGGAGGUAGGGUGGGGAGCGGGAGCAAGAGCUGAAAAACUUACCUACUGGGGACUGUGCUCACUACCUGGGUGACAGGAUCAUACGUACCCCAAACCUCAACAUCACACAGUAUACUCAGCUAACAAACCUGCCCAUGUGUUUCCUGAAUCUAAAAUAAAAAUCGAAAUAAUUUUUUUAAAAAAGAAAAAGACAAUAGUAUUACCCAUGGGACAAAAUUUGUACUAUUAGCAAGAAUCAUUUUGUGUCUCAUUUAGAAACAAUUUGACUUUUGUUCCAGUGUUUAAACUUUGACAAAAAUGGUUUUGAAUAGAUCUPUAUAACCUGAUGCCAUAAAUACAAGAUUCUCUGAUACCUUCAUUUAAUAUAUCAAUAUUGGGCCUAAAACAGUAUUCUGUAAAGCUUAAAUUGGUAUUAACUAUGAUCAUCUUGAUGUCUAUGAUAGAUAAUAAACAAGGUCAUACAUACCUUACUAAACAAUUUUGGUUUUUCACCAACAUUUUAUUCUUUAAAAGAUUUAGACUAACAGAAUUAUUUAGCAUUUCGAGUCAUGUGCUUUAUUUAGCAAGUGAGUAAAAAUAUUGGAAUAUUGAAGUAUUUGCAUAAAAAAUCAAAUGGUGGUGUUUUGUAAUCUCUAUUGUAUUUCCUAUUAAGGUUUCAUAUAUUACUUUCCCAUUGUUCCUGAAUUUGU
Sequence (SHORT NAMES ENCODING) AGUACCCAAGCGAGCCAUUUAACAUGGCGGAGGAUGUUUCCUCAGCGGCCCCGAGCCCGCGGGGCUGUGCGGAUGGUAGGGAUGCCGACCCUACUGAGGAGCAGAUGGCAGAAACAGAGAGAAACGACGAGGAGCAGUUCGAAUGCCAGGAACUGCUCGAGUGCCAGGUGCAGGUGGGGGCCCCCGAGGAGGAGGAGGAGGAGGAGGAGGACGCGGGCCUGGUGGCCGAGGCCGAGGCCGUGGCUGCCGGCUGGAUGCUCGAUUUCCUCUGCCUCUCUCUUUGCCGAGCUUUCCGCGACGGCCGCUCCGAGGACUUCCGCAGGACCCGCAACAGCGCAGAGGAUUAAAACCUUCAUGGGGGCAGAGACUGGCUAUCUGAAGUCAUCACCUCCUAACACAGGCUGGCAGUAGAUGUUCACUAUUAUUCAUGGACUAUCCAGUCUAm6ACAGCUUGCCAGUUGAGAACGAUAUACAUAUGUCAGUUUUUGACAAGAAUUGCAGCAGGAAAAACCCUUGAUGCACAGUUUGAAAAUGAUGAACGAAUUACACCCUUGGAAUCAGCCCUGAUGAUUUGGGGUUCAAUUGAAAAGGAACAUGACAAACUUCAUGAAGAAAUACAGAAUUUAAUUAAAAUUCAGGCUAUAGCUGUUUGUAUGGAAAAUGGCAACUYUAAAGAAGCAGAAGAAGUCUUUGAAAGAAUAUUUGGUGAUCCAAAUUCUCAUAUGCCUUUCAAAAGCAAAUUGCUUAUGAUAAUCUCUCAGAAAGAUACAUUUCAUUCCUUUUUUCAACACUUCAGCUACAACCACAUGAUGGAGAAAAUUAAGAGUUAUGUGAAUUAUGUGCUAAGUGAAAAAUCAUCAACCUUUCUAAUGAAGGCAGCGGCAAAAGUAGUAGAAAGCAAAAGGACAAGAACAAUAm6ACUUCUCAAGAUAAACCUAGUGGUAAUGAUGUUGAAAUGGAAACUGAAGCUAAUUUGGAUACAAGAAAAAGGUCUCACAAGAAUCUUUUCUUAUCUAAGUUGCAACAUGGAACCCAGCAACAAGACCUUAAUAAGAAAGAAAGAAGAGUAGGAACUCCUCAAAGUACAAAAAAGAAAAAAGAAAGCAGAAGAGCCACUGAAAGCAGAAUACCUGUUUCAAAGAGUCAGCCGGUAACUCCUGAAAAACAUCGAGCUAGAAAAAGACAGGCAUGGCUUUGGGAAGAAGACAAGAAUUUGAGAUCUGGCGUGAGGAAAUAUGGAGAGGGAAACUGGUCUAAAAUACUGUUGCAUUAUAAAUUCAACAACCGGACAAGUGUCAUGUUAAAAGACAGAUGGAGGACCAUGAAGAAACUAAAACUGAUUUCCUCAGACAGCGAAGACUGAUUGUGUUUGUAAAAGCUUGAUGAAAGGm6ACAGUUAAGUAUUUUGAUCACUGCAUUUUGUUUGAAACUUGUGUCAUUGAUGUAAUUUAAAACUUUUGUUUAAAGCAUUACAGUAUUUUUCUGUGACCAUCAAUUAAUGAGGGUUUGUGCUACCAGAGUUAAAGCAUAUGCUAUCAUUGUAUUCUYUAAGAACCUUAUUUUGAUAAAAUGUAAAUUUGUUGAACCCUGCCACAUUUAGUAUCCCCACCCCCAAAUCCUGUUCCAAUGAAAAAAUUAAAACCUGAUACGAAAAAAAAAAAAUUCCAGUUAACCUAUUUUGUGUCUGUAGGCUGACCUCAACCCUGUAACGUAACCCAUUAAAAUGAAUUUCUUUUUUUUUAAGACAGAGUUUCUCUCUGUUGCCCAGGCUGGAGUGCAGUGGCGCAAUUUCAGCUCACUGCAACCUCUGCCUCCCAGGUUCAAGUGAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCACACACCACCACGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGGCGGGGUUUCACCAUGCUGGUCAGGAUGUUCUCCAACUCCUGACUUCAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGAGAUUACAGACGUGAGCCACUGCGUCCUGCCUAAAAUGAAUUUUCUAGAUGAUUGAAUAACAGUAGUCCUUUGAUAGAAGAUAAUGACUUGGUUUAUGGCCUUAAUAUACUACUUAAUUACUUAAGAUGUUUAUUAAUAGAAUGAUAAAUGUACAGAGUAACCUAUAAGCAUGACAUACUUUUGCUUUCAGUAGUUUCAUGUAAAGAAAAAAACUUGAAAAUAGUAAUACCUGAGUACCCAUGGGAAUAAUAGACACUGGGGAGGUAGGGUGGGGAGCGGGAGCAAGAGCUGAAAAACUUACCUACUGGGGACUGUGCUCACUACCUGGGUGACAGGAUCAUACGUACCCCAAACCUCAACAUCACACAGUAUACUCAGCUAACAAACCUGCCCAUGUGUUUCCUGAAUCUAAAAUAAAAAUCGAAAUAAUUUUUUUAAAAAAGAAAAAGACAAUAGUAUUACCCAUGGGACAAAAUUUGUACUAUUAGCAAGAAUCAUUUUGUGUCUCAUUUAGAAACAAUUUGACUUUUGUUCCAGUGUUUAAACUUUGACAAAAAUGGUUUUGAAUAGAUCUYUAUAACCUGAUGCCAUAAAUACAAGAUUCUCUGAUACCUUCAUUUAAUAUAUCAAUAUUGGGCCUAAAACAGUAUUCUGUAAAGCUUAAAUUGGUAUUAACUAUGAUCAUCUUGAUGUCUAUGAUAGAUAAUAAACAAGGUCAUACAUACCUUACUAAACAAUUUUGGUUUUUCACCAACAUUUUAUUCUUUAAAAGAUUUAGACUAACAGAAUUAUUUAGCAUUUCGAGUCAUGUGCUUUAUUUAGCAAGUGAGUAAAAAUAUUGGAAUAUUGAAGUAUUUGCAUAAAAAAUCAAAUGGUGGUGUUUUGUAAUCUCUAUUGUAUUUCCUAUUAAGGUUUCAUAUAUUACUUUCCCAUUGUUCCUGAAUUUGU
Sequence (MODOMICS CODE ENCODING) AGUACCCAAGCGAGCCAUUUAACAUGGCGGAGGAUGUUUCCUCAGCGGCCCCGAGCCCGCGGGGCUGUGCGGAUGGUAGGGAUGCCGACCCUACUGAGGAGCAGAUGGCAGAAACAGAGAGAAACGACGAGGAGCAGUUCGAAUGCCAGGAACUGCUCGAGUGCCAGGUGCAGGUGGGGGCCCCCGAGGAGGAGGAGGAGGAGGAGGAGGACGCGGGCCUGGUGGCCGAGGCCGAGGCCGUGGCUGCCGGCUGGAUGCUCGAUUUCCUCUGCCUCUCUCUUUGCCGAGCUUUCCGCGACGGCCGCUCCGAGGACUUCCGCAGGACCCGCAACAGCGCAGAGGAUUAAAACCUUCAUGGGGGCAGAGACUGGCUAUCUGAAGUCAUCACCUCCUAACACAGGCUGGCAGUAGAUGUUCACUAUUAUUCAUGGACUAUCCAGUCUA2000000006ACAGCUUGCCAGUUGAGAACGAUAUACAUAUGUCAGUUUUUGACAAGAAUUGCAGCAGGAAAAACCCUUGAUGCACAGUUUGAAAAUGAUGAACGAAUUACACCCUUGGAAUCAGCCCUGAUGAUUUGGGGUUCAAUUGAAAAGGAACAUGACAAACUUCAUGAAGAAAUACAGAAUUUAAUUAAAAUUCAGGCUAUAGCUGUUUGUAUGGAAAAUGGCAACU2000000009UUAAAGAAGCAGAAGAAGUCUUUGAAAGAAUAUUUGGUGAUCCAAAUUCUCAUAUGCCUUUCAAAAGCAAAUUGCUUAUGAUAAUCUCUCAGAAAGAUACAUUUCAUUCCUUUUUUCAACACUUCAGCUACAACCACAUGAUGGAGAAAAUUAAGAGUUAUGUGAAUUAUGUGCUAAGUGAAAAAUCAUCAACCUUUCUAAUGAAGGCAGCGGCAAAAGUAGUAGAAAGCAAAAGGACAAGAACAAUA2000000006ACUUCUCAAGAUAAACCUAGUGGUAAUGAUGUUGAAAUGGAAACUGAAGCUAAUUUGGAUACAAGAAAAAGGUCUCACAAGAAUCUUUUCUUAUCUAAGUUGCAACAUGGAACCCAGCAACAAGACCUUAAUAAGAAAGAAAGAAGAGUAGGAACUCCUCAAAGUACAAAAAAGAAAAAAGAAAGCAGAAGAGCCACUGAAAGCAGAAUACCUGUUUCAAAGAGUCAGCCGGUAACUCCUGAAAAACAUCGAGCUAGAAAAAGACAGGCAUGGCUUUGGGAAGAAGACAAGAAUUUGAGAUCUGGCGUGAGGAAAUAUGGAGAGGGAAACUGGUCUAAAAUACUGUUGCAUUAUAAAUUCAACAACCGGACAAGUGUCAUGUUAAAAGACAGAUGGAGGACCAUGAAGAAACUAAAACUGAUUUCCUCAGACAGCGAAGACUGAUUGUGUUUGUAAAAGCUUGAUGAAAGG2000000006ACAGUUAAGUAUUUUGAUCACUGCAUUUUGUUUGAAACUUGUGUCAUUGAUGUAAUUUAAAACUUUUGUUUAAAGCAUUACAGUAUUUUUCUGUGACCAUCAAUUAAUGAGGGUUUGUGCUACCAGAGUUAAAGCAUAUGCUAUCAUUGUAUUCU2000000009UUAAGAACCUUAUUUUGAUAAAAUGUAAAUUUGUUGAACCCUGCCACAUUUAGUAUCCCCACCCCCAAAUCCUGUUCCAAUGAAAAAAUUAAAACCUGAUACGAAAAAAAAAAAAUUCCAGUUAACCUAUUUUGUGUCUGUAGGCUGACCUCAACCCUGUAACGUAACCCAUUAAAAUGAAUUUCUUUUUUUUUAAGACAGAGUUUCUCUCUGUUGCCCAGGCUGGAGUGCAGUGGCGCAAUUUCAGCUCACUGCAACCUCUGCCUCCCAGGUUCAAGUGAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCACACACCACCACGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGGCGGGGUUUCACCAUGCUGGUCAGGAUGUUCUCCAACUCCUGACUUCAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGAGAUUACAGACGUGAGCCACUGCGUCCUGCCUAAAAUGAAUUUUCUAGAUGAUUGAAUAACAGUAGUCCUUUGAUAGAAGAUAAUGACUUGGUUUAUGGCCUUAAUAUACUACUUAAUUACUUAAGAUGUUUAUUAAUAGAAUGAUAAAUGUACAGAGUAACCUAUAAGCAUGACAUACUUUUGCUUUCAGUAGUUUCAUGUAAAGAAAAAAACUUGAAAAUAGUAAUACCUGAGUACCCAUGGGAAUAAUAGACACUGGGGAGGUAGGGUGGGGAGCGGGAGCAAGAGCUGAAAAACUUACCUACUGGGGACUGUGCUCACUACCUGGGUGACAGGAUCAUACGUACCCCAAACCUCAACAUCACACAGUAUACUCAGCUAACAAACCUGCCCAUGUGUUUCCUGAAUCUAAAAUAAAAAUCGAAAUAAUUUUUUUAAAAAAGAAAAAGACAAUAGUAUUACCCAUGGGACAAAAUUUGUACUAUUAGCAAGAAUCAUUUUGUGUCUCAUUUAGAAACAAUUUGACUUUUGUUCCAGUGUUUAAACUUUGACAAAAAUGGUUUUGAAUAGAUCU2000000009UUAUAACCUGAUGCCAUAAAUACAAGAUUCUCUGAUACCUUCAUUUAAUAUAUCAAUAUUGGGCCUAAAACAGUAUUCUGUAAAGCUUAAAUUGGUAUUAACUAUGAUCAUCUUGAUGUCUAUGAUAGAUAAUAAACAAGGUCAUACAUACCUUACUAAACAAUUUUGGUUUUUCACCAACAUUUUAUUCUUUAAAAGAUUUAGACUAACAGAAUUAUUUAGCAUUUCGAGUCAUGUGCUUUAUUUAGCAAGUGAGUAAAAAUAUUGGAAUAUUGAAGUAUUUGCAUAAAAAAUCAAAUGGUGGUGUUUUGUAAUCUCUAUUGUAUUUCCUAUUAAGGUUUCAUAUAUUACUUUCCCAUUGUUCCUGAAUUUGU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 445 668 916 1387 1542 2560
Modification Positions m6A Y m6A m6A Y Y
Genomic Coordinates 8:73013921:+ 8:73022247:+ 8:73026982:+ 8:73046165:+ 8:73046320:+ 8:73047338:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
BtsJQJ3DteUq
dknfVe6BK8aP