Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000408965
Gene ID: ENSG00000221869
Gene Name: CEBPD
Sequence (UNICHARACTER ENCODING) AGGUGACAGCCUCGCUUGGACGCAGAGCCCGGCCCGACGCCGCCAUGAGCGCCGCGCUCUUCAGCCUGGACGGCCCGGCGCGCGGCGCGCCCUGGCCUGCGGAGCCUGCGCCCUUCUACGAЖCCGGGCCGGGCGGGCAAGCCGGGCCGCGGGGCCGAGCCAGGGGCCCUAGGCGAGCCAGGCGCCGCCGCCCCCGCCAUGUACGACGACGAGAGCGCCAUCGACUUCAGCGCCUACЖUCGACUCCAUGGCCGCCGUGCCCACCCUGGAGCUGUGCCACGACGAGCUCUUCGCCGACCUCUUCAACAGCAAUCACAAGGCGGGCGGCGCGGGGCCCCUGGAGCUUCUUCCCGGCGGCCCCGCGCGCCCCUUGGGCCCGGGCCCUGCCGCUCCCCGCCUGCUCAAGCGCGAGCCCGACUGGGGCGACGGCGACGCGCCCGGCUCGCUGUUGCCCGCGCAGGUGGCCGCGUGCGCACAGACCGUGGUGAGCUUGGCGGCCGCAGGGCAGCCCACCCCGCCCACGUCGCCGGAGCCGCCGCGCAGCAGCCCCAGGCAGACCCCCGCGCCCGGCCCCGCCCGGGAGAAGAGCGCCGGCAAGAGGGGCBCGGACCGCGGCAGCCCCGAGUACCGGCAGCGGCGCGAGCGCAACAACAUCGCCGUGCGCAAGAGCCGCGACAAGGCCAAGCGGCGCAACCAGGAGAUGCAGCAGAAGUUGGUGGAGCUGUCGGCUGAGAACGAGAAGCUGCACCAGCGCGUGGAGCAGCUCACGCGGGACCUGGCCGGCCUCCGGCAGUUCUUCAAGCAGCUGCCCAGCCCGCCCUUCCUGCCGGCCGCCGGGЖCAGCAGЖCUGCCGGUAACGCGCGGCCGGGGCGGGAGAGЖCUCAGCAACGACCCAUACCUCAGЖCCCGACGGCCCGGAGCGGAGCGCGCCCUGCCCUGGCGCAGCCAGAGCCGCCGGGUGCCCGCUGCAGUUUCUUGGGЖCAUAGGAGCGCAAAGAAGCUACAGCCUGGЖCUUACCACCACUAAЖCUGCGAGAGAAGCUAAACGUGUUUAUUUUCCCUUAAAUUAUUUUUGUAAUGGUAGCUUUUUCUACAUCUUACUCCUGUUGAUGCAGCUAAGGUACAUUUGUAAAAAGAAAAAAAACCAGЖCUUUUCAGACAAACCCUUUGUAUUGUAGAUAAGAGGAAAAGЖCUGAGCAUGCUCACUUUUUUAUAUUAAUUUUUACAGUAUUUGUAAGAAUAAAGCAGCAUUUGAAAUCGC
Sequence (SHORT NAMES ENCODING) AGGUGACAGCCUCGCUUGGACGCAGAGCCCGGCCCGACGCCGCCAUGAGCGCCGCGCUCUUCAGCCUGGACGGCCCGGCGCGCGGCGCGCCCUGGCCUGCGGAGCCUGCGCCCUUCUACGAm6ACCGGGCCGGGCGGGCAAGCCGGGCCGCGGGGCCGAGCCAGGGGCCCUAGGCGAGCCAGGCGCCGCCGCCCCCGCCAUGUACGACGACGAGAGCGCCAUCGACUUCAGCGCCUACm6AUCGACUCCAUGGCCGCCGUGCCCACCCUGGAGCUGUGCCACGACGAGCUCUUCGCCGACCUCUUCAACAGCAAUCACAAGGCGGGCGGCGCGGGGCCCCUGGAGCUUCUUCCCGGCGGCCCCGCGCGCCCCUUGGGCCCGGGCCCUGCCGCUCCCCGCCUGCUCAAGCGCGAGCCCGACUGGGGCGACGGCGACGCGCCCGGCUCGCUGUUGCCCGCGCAGGUGGCCGCGUGCGCACAGACCGUGGUGAGCUUGGCGGCCGCAGGGCAGCCCACCCCGCCCACGUCGCCGGAGCCGCCGCGCAGCAGCCCCAGGCAGACCCCCGCGCCCGGCCCCGCCCGGGAGAAGAGCGCCGGCAAGAGGGGCCmCGGACCGCGGCAGCCCCGAGUACCGGCAGCGGCGCGAGCGCAACAACAUCGCCGUGCGCAAGAGCCGCGACAAGGCCAAGCGGCGCAACCAGGAGAUGCAGCAGAAGUUGGUGGAGCUGUCGGCUGAGAACGAGAAGCUGCACCAGCGCGUGGAGCAGCUCACGCGGGACCUGGCCGGCCUCCGGCAGUUCUUCAAGCAGCUGCCCAGCCCGCCCUUCCUGCCGGCCGCCGGGm6ACAGCAGm6ACUGCCGGUAACGCGCGGCCGGGGCGGGAGAGm6ACUCAGCAACGACCCAUACCUCAGm6ACCCGACGGCCCGGAGCGGAGCGCGCCCUGCCCUGGCGCAGCCAGAGCCGCCGGGUGCCCGCUGCAGUUUCUUGGGm6ACAUAGGAGCGCAAAGAAGCUACAGCCUGGm6ACUUACCACCACUAAm6ACUGCGAGAGAAGCUAAACGUGUUUAUUUUCCCUUAAAUUAUUUUUGUAAUGGUAGCUUUUUCUACAUCUUACUCCUGUUGAUGCAGCUAAGGUACAUUUGUAAAAAGAAAAAAAACCAGm6ACUUUUCAGACAAACCCUUUGUAUUGUAGAUAAGAGGAAAAGm6ACUGAGCAUGCUCACUUUUUUAUAUUAAUUUUUACAGUAUUUGUAAGAAUAAAGCAGCAUUUGAAAUCGC
Sequence (MODOMICS CODE ENCODING) AGGUGACAGCCUCGCUUGGACGCAGAGCCCGGCCCGACGCCGCCAUGAGCGCCGCGCUCUUCAGCCUGGACGGCCCGGCGCGCGGCGCGCCCUGGCCUGCGGAGCCUGCGCCCUUCUACGA2000000006ACCGGGCCGGGCGGGCAAGCCGGGCCGCGGGGCCGAGCCAGGGGCCCUAGGCGAGCCAGGCGCCGCCGCCCCCGCCAUGUACGACGACGAGAGCGCCAUCGACUUCAGCGCCUAC2000000006AUCGACUCCAUGGCCGCCGUGCCCACCCUGGAGCUGUGCCACGACGAGCUCUUCGCCGACCUCUUCAACAGCAAUCACAAGGCGGGCGGCGCGGGGCCCCUGGAGCUUCUUCCCGGCGGCCCCGCGCGCCCCUUGGGCCCGGGCCCUGCCGCUCCCCGCCUGCUCAAGCGCGAGCCCGACUGGGGCGACGGCGACGCGCCCGGCUCGCUGUUGCCCGCGCAGGUGGCCGCGUGCGCACAGACCGUGGUGAGCUUGGCGGCCGCAGGGCAGCCCACCCCGCCCACGUCGCCGGAGCCGCCGCGCAGCAGCCCCAGGCAGACCCCCGCGCCCGGCCCCGCCCGGGAGAAGAGCGCCGGCAAGAGGGGC2000000090CCGGACCGCGGCAGCCCCGAGUACCGGCAGCGGCGCGAGCGCAACAACAUCGCCGUGCGCAAGAGCCGCGACAAGGCCAAGCGGCGCAACCAGGAGAUGCAGCAGAAGUUGGUGGAGCUGUCGGCUGAGAACGAGAAGCUGCACCAGCGCGUGGAGCAGCUCACGCGGGACCUGGCCGGCCUCCGGCAGUUCUUCAAGCAGCUGCCCAGCCCGCCCUUCCUGCCGGCCGCCGGG2000000006ACAGCAG2000000006ACUGCCGGUAACGCGCGGCCGGGGCGGGAGAG2000000006ACUCAGCAACGACCCAUACCUCAG2000000006ACCCGACGGCCCGGAGCGGAGCGCGCCCUGCCCUGGCGCAGCCAGAGCCGCCGGGUGCCCGCUGCAGUUUCUUGGG2000000006ACAUAGGAGCGCAAAGAAGCUACAGCCUGG2000000006ACUUACCACCACUAA2000000006ACUGCGAGAGAAGCUAAACGUGUUUAUUUUCCCUUAAAUUAUUUUUGUAAUGGUAGCUUUUUCUACAUCUUACUCCUGUUGAUGCAGCUAAGGUACAUUUGUAAAAAGAAAAAAAACCAG2000000006ACUUUUCAGACAAACCCUUUGUAUUGUAGAUAAGAGGAAAAG2000000006ACUGAGCAUGCUCACUUUUUUAUAUUAAUUUUUACAGUAUUUGUAAGAAUAAAGCAGCAUUUGAAAUCGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 122 237 603 837 844 876 900 976 1006 1021 1141 1183
Modification Positions m6A m6A Cm m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 8:47738043:- 8:47737928:- 8:47737562:- 8:47737328:- 8:47737321:- 8:47737289:- 8:47737265:- 8:47737189:- 8:47737159:- 8:47737144:- 8:47737024:- 8:47736982:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
jaSvBXBkn3xs
YkSG92k4EHDM
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
WiQcrNTGZHPT
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
ArijeGVTwYBw
KTLz8piFYdwC
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
ArijeGVTwYBw
KTLz8piFYdwC
nfCHyrYzE6fB
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
Yfn77uLS5tv8
aivdrAsbdKEU
Ap2q43bQLNek
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
V5PvfiKsgFMd
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
Yfn77uLS5tv8