Modomics - A Database of RNA Modifications

General Data

RNA Type snRNA
SOTerm SO:0000393
Original Source AF204671
Sequence (UNICHARACTER ENCODING) AAGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGUGAUUGUUCAUUUAGUGCUAUACUAʍAAACUCCA#UACUCCUAUACGGGAAUAUUUGCAUCCACCAAGGGUGGGGAA
Sequence (SHORT NAMES ENCODING) m2,2,7GpppNAAGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGUGAUUGUUCAUUUAGUGCUAUACUApAmAAACUCCApGmUACUCCUAUACGGGAAUAUUUGCAUCCACCAAGGGUGGGGAA
Sequence (MODOMICS CODE ENCODING) 2002279553NAAGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGUGAUUGUUCAUUUAGUGCUAUACUA2000090551AAAACUCCA2000090551GUACUCCUAUACGGGAAUAUUUGCAUCCACCAAGGGUGGGGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment None 64 None 73 None
Position in the sequence 0 64 64 73 73
Modification positions m2,2,7GpppN Am pAm Gm pGm
Level of Experimental Evidence 5 None 5 None 5
Level of Experimental Reliability 5 None 5 None 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS