Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000315792
Gene ID: ENSG00000176907
Gene Name: TCIM
Sequence (UNICHARACTER ENCODING) ACAGACUCUCUGGAAAGCCUGGGAGCUGAAUUCCGGAAGAUCCCCACAUCGAUGAAAGCAAAGCGAAGCCACCAAGCCGUCAUCAUGUCCACGUCGCUACGAGUCAGCCCAUCCAUCCAUGGCUACCACUUCGACACAGCCUCUCGUAAGAAAGCCGUGGGCAACAUCUUUGAAAACACAGACCAAGAAUCACUAGAAAGGCUCUUCAGAAACUCUGGAGACAAGAAAGCAGAGGAGAGAGCCAAGAUCAUUUUUGCCAUAGAUCAAGAUGUGGAGGAGAAAACGCGUGCCCUGAUGGCCUUGAAGAAGAGGACAAAAGACAAGCUUUUCCAGUUUCUGAAACUGCGGAAAUAUUCCAUCAAAGUUCACUGAAGAGAAGAGGAUGGAUAAGGЖCGUUAUCCAAGAAUGGЖCAUUCAAAGACCAAGUGAGUUUGUGAGAUUCUAACAGAUGCAGCAUUUUGCUGCUACCUUACAAGCUUCUCUUCUGUCAGGЖCUCCAGAGGCUGGAAAGGGACCGGGЖCUGGAAAGGGACCAGGЖCUGAACAGЖCUGGUUACЖAAGЖCUCCAAACAAUUUCAUGCCCUGUGCUGUUACAGAGGAGAACAAAAUGCUUUCAGCAAGGAUUUGAAAACUCUUCCGUCCCUGCAGGAAAGGAUUGAUGCUGAUAGAAGAGCCUGGЖCAGAUGUAAUGAGAЖCUAAAGAAAACAGAUGGCUGGAGAUGACAUUUAUCCAGGGUCACUUUGUCAGGCCCUAGGЖCUUAAAUCGAAGUUGAЖCUUUUUUUUUUUUUUUUAACCAAAUAGAUAGGGGAAGGGAGGAGGGAGAGGGAGGACAGGGAGAGAAAAUACCAUGCAUAAAUUGUUUACUGAAUUUUUAUAUCUGAGUGUUCAAAAUAUUUCCAAGCCUGAGUAUUGUCUAUUGGUAUAGAUUUUUAGAAAUCAAUAAUUGAUUAUUUAUUUGCACUUAUUACAAUGCCUGAAAAAGUGCACCACAUGGAUGUUAAGUAGAAAUUCAAGAAAGUAAGAUGUCUUCAGCAACUCAGUAAAACCUUACGCCACCUUUUGGUUUGUAAAAGGUUUUUUAUACAUUUCAAACAGGUUGCACAAAAGUUAAAAUAAUGGGGUCUUUUAUAAAUCCAAAGUACUGUGAAAACAUUUUACAUAUUUUUUAAAUCUUCUGACUAAUGCUAAAACGUAAUCUAAUUAAAUUUCAUACAGUUACUGCAGUAAGCAUUAGGAAGUGAAUAUGAUAUACAAAAUAGUUUAUAAAGACUCUAUAGUUUCUAUAAUUUAUUUUACUGGCAAAUGUCAUGCAACAAUAAUAAAUUAUUGUAAACUUUGUGGCUUUUGGUCUGUGAUGCUUGGUCUCAAAGGAAAAAAUAAGAUGGUAAAUGUUGAUAUUUACAAACUUUUCUAAAGAUGUGUCUCUAACAAUAAAAGUUAAUUUUAGAGUAGUUUUAUAUUAAUUACCAAACUUUUUCAAAACAAAUUCUUACGUCAAAUAUCUGGGAAGUUUCUCUGUCCCAAUCUUAAAAUAUAAAAUAUAGAUAUAGAAGUUCAUAGAUUGACUCCUUGGCAUUUCUAUUUAUGUAUCCAUUAAGGAUGAGUUUUAAAAGGCUUUCUCUUCAUACUUUUGAAAAAUUUCUUCUAUGAUUACAGUAGCUAUGUACAUGUGUACAUCUAUUUUUCCCAAGCAAUAUGUUUUGGGUUUAGAGUCUGAGUGAUGACCAAGAUUCUGUGUGUUACUACUGUUUGUUUAAUAGGAACAAAUAUAGAAAUAAUAUUAUCUCUUUGCUUAUUUCCCGUUAAAACUAUAAUAAAAUGUUUCUAGGACAGCAUA
Sequence (SHORT NAMES ENCODING) ACAGACUCUCUGGAAAGCCUGGGAGCUGAAUUCCGGAAGAUCCCCACAUCGAUGAAAGCAAAGCGAAGCCACCAAGCCGUCAUCAUGUCCACGUCGCUACGAGUCAGCCCAUCCAUCCAUGGCUACCACUUCGACACAGCCUCUCGUAAGAAAGCCGUGGGCAACAUCUUUGAAAACACAGACCAAGAAUCACUAGAAAGGCUCUUCAGAAACUCUGGAGACAAGAAAGCAGAGGAGAGAGCCAAGAUCAUUUUUGCCAUAGAUCAAGAUGUGGAGGAGAAAACGCGUGCCCUGAUGGCCUUGAAGAAGAGGACAAAAGACAAGCUUUUCCAGUUUCUGAAACUGCGGAAAUAUUCCAUCAAAGUUCACUGAAGAGAAGAGGAUGGAUAAGGm6ACGUUAUCCAAGAAUGGm6ACAUUCAAAGACCAAGUGAGUUUGUGAGAUUCUAACAGAUGCAGCAUUUUGCUGCUACCUUACAAGCUUCUCUUCUGUCAGGm6ACUCCAGAGGCUGGAAAGGGACCGGGm6ACUGGAAAGGGACCAGGm6ACUGAACAGm6ACUGGUUACm6AAAGm6ACUCCAAACAAUUUCAUGCCCUGUGCUGUUACAGAGGAGAACAAAAUGCUUUCAGCAAGGAUUUGAAAACUCUUCCGUCCCUGCAGGAAAGGAUUGAUGCUGAUAGAAGAGCCUGGm6ACAGAUGUAAUGAGAm6ACUAAAGAAAACAGAUGGCUGGAGAUGACAUUUAUCCAGGGUCACUUUGUCAGGCCCUAGGm6ACUUAAAUCGAAGUUGAm6ACUUUUUUUUUUUUUUUUAACCAAAUAGAUAGGGGAAGGGAGGAGGGAGAGGGAGGACAGGGAGAGAAAAUACCAUGCAUAAAUUGUUUACUGAAUUUUUAUAUCUGAGUGUUCAAAAUAUUUCCAAGCCUGAGUAUUGUCUAUUGGUAUAGAUUUUUAGAAAUCAAUAAUUGAUUAUUUAUUUGCACUUAUUACAAUGCCUGAAAAAGUGCACCACAUGGAUGUUAAGUAGAAAUUCAAGAAAGUAAGAUGUCUUCAGCAACUCAGUAAAACCUUACGCCACCUUUUGGUUUGUAAAAGGUUUUUUAUACAUUUCAAACAGGUUGCACAAAAGUUAAAAUAAUGGGGUCUUUUAUAAAUCCAAAGUACUGUGAAAACAUUUUACAUAUUUUUUAAAUCUUCUGACUAAUGCUAAAACGUAAUCUAAUUAAAUUUCAUACAGUUACUGCAGUAAGCAUUAGGAAGUGAAUAUGAUAUACAAAAUAGUUUAUAAAGACUCUAUAGUUUCUAUAAUUUAUUUUACUGGCAAAUGUCAUGCAACAAUAAUAAAUUAUUGUAAACUUUGUGGCUUUUGGUCUGUGAUGCUUGGUCUCAAAGGAAAAAAUAAGAUGGUAAAUGUUGAUAUUUACAAACUUUUCUAAAGAUGUGUCUCUAACAAUAAAAGUUAAUUUUAGAGUAGUUUUAUAUUAAUUACCAAACUUUUUCAAAACAAAUUCUUACGUCAAAUAUCUGGGAAGUUUCUCUGUCCCAAUCUUAAAAUAUAAAAUAUAGAUAUAGAAGUUCAUAGAUUGACUCCUUGGCAUUUCUAUUUAUGUAUCCAUUAAGGAUGAGUUUUAAAAGGCUUUCUCUUCAUACUUUUGAAAAAUUUCUUCUAUGAUUACAGUAGCUAUGUACAUGUGUACAUCUAUUUUUCCCAAGCAAUAUGUUUUGGGUUUAGAGUCUGAGUGAUGACCAAGAUUCUGUGUGUUACUACUGUUUGUUUAAUAGGAACAAAUAUAGAAAUAAUAUUAUCUCUUUGCUUAUUUCCCGUUAAAACUAUAAUAAAAUGUUUCUAGGACAGCAUA
Sequence (MODOMICS CODE ENCODING) ACAGACUCUCUGGAAAGCCUGGGAGCUGAAUUCCGGAAGAUCCCCACAUCGAUGAAAGCAAAGCGAAGCCACCAAGCCGUCAUCAUGUCCACGUCGCUACGAGUCAGCCCAUCCAUCCAUGGCUACCACUUCGACACAGCCUCUCGUAAGAAAGCCGUGGGCAACAUCUUUGAAAACACAGACCAAGAAUCACUAGAAAGGCUCUUCAGAAACUCUGGAGACAAGAAAGCAGAGGAGAGAGCCAAGAUCAUUUUUGCCAUAGAUCAAGAUGUGGAGGAGAAAACGCGUGCCCUGAUGGCCUUGAAGAAGAGGACAAAAGACAAGCUUUUCCAGUUUCUGAAACUGCGGAAAUAUUCCAUCAAAGUUCACUGAAGAGAAGAGGAUGGAUAAGG2000000006ACGUUAUCCAAGAAUGG2000000006ACAUUCAAAGACCAAGUGAGUUUGUGAGAUUCUAACAGAUGCAGCAUUUUGCUGCUACCUUACAAGCUUCUCUUCUGUCAGG2000000006ACUCCAGAGGCUGGAAAGGGACCGGG2000000006ACUGGAAAGGGACCAGG2000000006ACUGAACAG2000000006ACUGGUUAC2000000006AAAG2000000006ACUCCAAACAAUUUCAUGCCCUGUGCUGUUACAGAGGAGAACAAAAUGCUUUCAGCAAGGAUUUGAAAACUCUUCCGUCCCUGCAGGAAAGGAUUGAUGCUGAUAGAAGAGCCUGG2000000006ACAGAUGUAAUGAGA2000000006ACUAAAGAAAACAGAUGGCUGGAGAUGACAUUUAUCCAGGGUCACUUUGUCAGGCCCUAGG2000000006ACUUAAAUCGAAGUUGA2000000006ACUUUUUUUUUUUUUUUUAACCAAAUAGAUAGGGGAAGGGAGGAGGGAGAGGGAGGACAGGGAGAGAAAAUACCAUGCAUAAAUUGUUUACUGAAUUUUUAUAUCUGAGUGUUCAAAAUAUUUCCAAGCCUGAGUAUUGUCUAUUGGUAUAGAUUUUUAGAAAUCAAUAAUUGAUUAUUUAUUUGCACUUAUUACAAUGCCUGAAAAAGUGCACCACAUGGAUGUUAAGUAGAAAUUCAAGAAAGUAAGAUGUCUUCAGCAACUCAGUAAAACCUUACGCCACCUUUUGGUUUGUAAAAGGUUUUUUAUACAUUUCAAACAGGUUGCACAAAAGUUAAAAUAAUGGGGUCUUUUAUAAAUCCAAAGUACUGUGAAAACAUUUUACAUAUUUUUUAAAUCUUCUGACUAAUGCUAAAACGUAAUCUAAUUAAAUUUCAUACAGUUACUGCAGUAAGCAUUAGGAAGUGAAUAUGAUAUACAAAAUAGUUUAUAAAGACUCUAUAGUUUCUAUAAUUUAUUUUACUGGCAAAUGUCAUGCAACAAUAAUAAAUUAUUGUAAACUUUGUGGCUUUUGGUCUGUGAUGCUUGGUCUCAAAGGAAAAAAUAAGAUGGUAAAUGUUGAUAUUUACAAACUUUUCUAAAGAUGUGUCUCUAACAAUAAAAGUUAAUUUUAGAGUAGUUUUAUAUUAAUUACCAAACUUUUUCAAAACAAAUUCUUACGUCAAAUAUCUGGGAAGUUUCUCUGUCCCAAUCUUAAAAUAUAAAAUAUAGAUAUAGAAGUUCAUAGAUUGACUCCUUGGCAUUUCUAUUUAUGUAUCCAUUAAGGAUGAGUUUUAAAAGGCUUUCUCUUCAUACUUUUGAAAAAUUUCUUCUAUGAUUACAGUAGCUAUGUACAUGUGUACAUCUAUUUUUCCCAAGCAAUAUGUUUUGGGUUUAGAGUCUGAGUGAUGACCAAGAUUCUGUGUGUUACUACUGUUUGUUUAAUAGGAACAAAUAUAGAAAUAAUAUUAUCUCUUUGCUUAUUUCCCGUUAAAACUAUAAUAAAAUGUUUCUAGGACAGCAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 393 410 492 518 535 544 553 557 673 688 749 766
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 8:40153874:+ 8:40153891:+ 8:40153973:+ 8:40153999:+ 8:40154016:+ 8:40154025:+ 8:40154034:+ 8:40154038:+ 8:40154154:+ 8:40154169:+ 8:40154230:+ 8:40154247:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
aJksAshEgQ8U
D6ncpa2PPWj3
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
aJksAshEgQ8U
D6ncpa2PPWj3
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
3TeAZFYFxgvp
aivdrAsbdKEU
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
93arJtwJmuS9
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
dknfVe6BK8aP
aivdrAsbdKEU
gZuvgwMuBfgh
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
Lny8GcCeVGc9
UKen6WEino9G
dknfVe6BK8aP
aivdrAsbdKEU
gZuvgwMuBfgh
nGifePrmgHfe
QmcpiJ88DBDn
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
nfCHyrYzE6fB
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
3kRDPWwiRCgi
L6w2k2VEv4EY
3TeAZFYFxgvp
aivdrAsbdKEU
gZuvgwMuBfgh
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
3TeAZFYFxgvp
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
dknfVe6BK8aP
3TeAZFYFxgvp
aivdrAsbdKEU
gZuvgwMuBfgh
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
93arJtwJmuS9
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
3TeAZFYFxgvp
nGifePrmgHfe
NjZ8bGGJsNSR
UN3tNpbCPHYf
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP