Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000688025
Gene ID: ENSG00000291048
Gene Name: None
Sequence (UNICHARACTER ENCODING) AAGCUUUCAGGCCCUGGAGAGAAUCUUACAAUAUCAGAAGUGGGAUUCACAUAGCGCUUCCCGUGACCCUCCAGGAAUAUCAAGUGACCCAGCAAGGGCUGUGACCGUCUACGACAAGCUGGCAUCUUUCUUUAAAGAGGCACCUCUGGACCUGCAGCACCGGCUCCUCAUGAAGCUCAGAACCUGAGGACCCAGCCAUGGAGCGGUCAGCCUUCAUGGAGCAGGAUGCUGGGAGCGGGCUGGUGAUGCGUCUCCAUGAGCGGCCAGCCCUGCUGGUCAGCAGCACACCUGGACAGAGUUUGAACAACUGACUCUUCACGGACGCAACCUUCCUUCUCUUGUCUGUGUGAUAACAGGCAAAGGGCCUCUGAGGGAGUAUUACAGCCGCCUCAUCCACCAGAAGCAUUUCCAGCACAUCCAGGUCUGCACCCACUGGCUGGAGGGCCGAGGACUACCCCCGCUUCUAGGUGUCUGCUGAUUGGUCUGCUGGCUUGCAGGGGUGGGCCUUUGUCCCUGGCCAGCGCUGGACCUGUGGAUUUCAGGЖCUGUGACCCAGGACCACAGGCAGAGCUCUGUUCGACCAGAGAGGGGACUGAGUGUGCUGGCAGGGCUGAGGGGUUUUUGGUGGCCCAGCCAAACACCACCUUCUCUCAAGGGCCCUGUCCUCGUCCCAGAЖCUGGUUGUUUUCCUCCUGUGGUCUCUGAAGGACACAGGGCAUGGCUCUGGGACAGAGCCAUGUGGUGAUGЖCUGUAAUGGGAGUAUGCCUGACUCCAACAAGAGGGCUGUGGCUUGAAGGUCACCUUAAGAGGCACCCCGUCCUUUGAUUUCACCCUGGAGGCCCAGAGUAACUCUUCUGGAAGCCCCAUCAUGUCCAUGCCUGACAGCGCCCAUUGUUCCCUUUUCCCAGAGCCAAGAGCUGGGUAGAGCUGCAAGGЖCAGUGCCUGCACAGGGUGCUCAGGGCUGGGCAUUACCUGCUGCAAUGACAACAUCUAGCUGGAAGGCAGAGCGCUGAUGGЖCCGUCACUACGUCCCAGUCCAGCGCUGGGCCAUUGUCACCCUAGGGCUGUCUAAGUUGGCAGUGAUGUCUGCCUCUAAUGAGAGGCCAUUGAGAAGGЖCAUUUCCUUGGAGCUGCUCGAGGЖCUCGGCUGUGACAGUCGCUGAAGAUGUAUGCCCGGGGGCGGCAUAUCUUGCAGAUGGCCAGGCCUGUGAGGCUGGCACCACUGCCAAGCUCUAAGACAGACCUGGCGAGAGGAAAGGGGЖCCGUGUCUGCGACUGCACCAGGGUAAGCCCGCCUCGGUGCCCUGCCCUGCGCCCCAAGGUCACCUGUGAGUGAAGGCUGCCGGGUUCUCGAUGGCCCAUUCUGCAAUGUAGAGGGCGGCAUCCCAUGUGACCAGACCCGUGGUGCUGUGGGAGAUGAUGGCCAUGCUUUCGGAGAGUGUGACCGAGCCUCCCGAGGGCUGCACCAAGAGAGGGCGAGAGAGUCAGUCCAGCAAUCAGAAGGCAAGUGGCUUAGAAGACAAAUAGCCAUCCACCACAUGGCCAAAUAAACCAUGACAGGЖCCAA
Sequence (SHORT NAMES ENCODING) AAGCUUUCAGGCCCUGGAGAGAAUCUUACAAUAUCAGAAGUGGGAUUCACAUAGCGCUUCCCGUGACCCUCCAGGAAUAUCAAGUGACCCAGCAAGGGCUGUGACCGUCUACGACAAGCUGGCAUCUUUCUUUAAAGAGGCACCUCUGGACCUGCAGCACCGGCUCCUCAUGAAGCUCAGAACCUGAGGACCCAGCCAUGGAGCGGUCAGCCUUCAUGGAGCAGGAUGCUGGGAGCGGGCUGGUGAUGCGUCUCCAUGAGCGGCCAGCCCUGCUGGUCAGCAGCACACCUGGACAGAGUUUGAACAACUGACUCUUCACGGACGCAACCUUCCUUCUCUUGUCUGUGUGAUAACAGGCAAAGGGCCUCUGAGGGAGUAUUACAGCCGCCUCAUCCACCAGAAGCAUUUCCAGCACAUCCAGGUCUGCACCCACUGGCUGGAGGGCCGAGGACUACCCCCGCUUCUAGGUGUCUGCUGAUUGGUCUGCUGGCUUGCAGGGGUGGGCCUUUGUCCCUGGCCAGCGCUGGACCUGUGGAUUUCAGGm6ACUGUGACCCAGGACCACAGGCAGAGCUCUGUUCGACCAGAGAGGGGACUGAGUGUGCUGGCAGGGCUGAGGGGUUUUUGGUGGCCCAGCCAAACACCACCUUCUCUCAAGGGCCCUGUCCUCGUCCCAGAm6ACUGGUUGUUUUCCUCCUGUGGUCUCUGAAGGACACAGGGCAUGGCUCUGGGACAGAGCCAUGUGGUGAUGm6ACUGUAAUGGGAGUAUGCCUGACUCCAACAAGAGGGCUGUGGCUUGAAGGUCACCUUAAGAGGCACCCCGUCCUUUGAUUUCACCCUGGAGGCCCAGAGUAACUCUUCUGGAAGCCCCAUCAUGUCCAUGCCUGACAGCGCCCAUUGUUCCCUUUUCCCAGAGCCAAGAGCUGGGUAGAGCUGCAAGGm6ACAGUGCCUGCACAGGGUGCUCAGGGCUGGGCAUUACCUGCUGCAAUGACAACAUCUAGCUGGAAGGCAGAGCGCUGAUGGm6ACCGUCACUACGUCCCAGUCCAGCGCUGGGCCAUUGUCACCCUAGGGCUGUCUAAGUUGGCAGUGAUGUCUGCCUCUAAUGAGAGGCCAUUGAGAAGGm6ACAUUUCCUUGGAGCUGCUCGAGGm6ACUCGGCUGUGACAGUCGCUGAAGAUGUAUGCCCGGGGGCGGCAUAUCUUGCAGAUGGCCAGGCCUGUGAGGCUGGCACCACUGCCAAGCUCUAAGACAGACCUGGCGAGAGGAAAGGGGm6ACCGUGUCUGCGACUGCACCAGGGUAAGCCCGCCUCGGUGCCCUGCCCUGCGCCCCAAGGUCACCUGUGAGUGAAGGCUGCCGGGUUCUCGAUGGCCCAUUCUGCAAUGUAGAGGGCGGCAUCCCAUGUGACCAGACCCGUGGUGCUGUGGGAGAUGAUGGCCAUGCUUUCGGAGAGUGUGACCGAGCCUCCCGAGGGCUGCACCAAGAGAGGGCGAGAGAGUCAGUCCAGCAAUCAGAAGGCAAGUGGCUUAGAAGACAAAUAGCCAUCCACCACAUGGCCAAAUAAACCAUGACAGGm6ACCAA
Sequence (MODOMICS CODE ENCODING) AAGCUUUCAGGCCCUGGAGAGAAUCUUACAAUAUCAGAAGUGGGAUUCACAUAGCGCUUCCCGUGACCCUCCAGGAAUAUCAAGUGACCCAGCAAGGGCUGUGACCGUCUACGACAAGCUGGCAUCUUUCUUUAAAGAGGCACCUCUGGACCUGCAGCACCGGCUCCUCAUGAAGCUCAGAACCUGAGGACCCAGCCAUGGAGCGGUCAGCCUUCAUGGAGCAGGAUGCUGGGAGCGGGCUGGUGAUGCGUCUCCAUGAGCGGCCAGCCCUGCUGGUCAGCAGCACACCUGGACAGAGUUUGAACAACUGACUCUUCACGGACGCAACCUUCCUUCUCUUGUCUGUGUGAUAACAGGCAAAGGGCCUCUGAGGGAGUAUUACAGCCGCCUCAUCCACCAGAAGCAUUUCCAGCACAUCCAGGUCUGCACCCACUGGCUGGAGGGCCGAGGACUACCCCCGCUUCUAGGUGUCUGCUGAUUGGUCUGCUGGCUUGCAGGGGUGGGCCUUUGUCCCUGGCCAGCGCUGGACCUGUGGAUUUCAGG2000000006ACUGUGACCCAGGACCACAGGCAGAGCUCUGUUCGACCAGAGAGGGGACUGAGUGUGCUGGCAGGGCUGAGGGGUUUUUGGUGGCCCAGCCAAACACCACCUUCUCUCAAGGGCCCUGUCCUCGUCCCAGA2000000006ACUGGUUGUUUUCCUCCUGUGGUCUCUGAAGGACACAGGGCAUGGCUCUGGGACAGAGCCAUGUGGUGAUG2000000006ACUGUAAUGGGAGUAUGCCUGACUCCAACAAGAGGGCUGUGGCUUGAAGGUCACCUUAAGAGGCACCCCGUCCUUUGAUUUCACCCUGGAGGCCCAGAGUAACUCUUCUGGAAGCCCCAUCAUGUCCAUGCCUGACAGCGCCCAUUGUUCCCUUUUCCCAGAGCCAAGAGCUGGGUAGAGCUGCAAGG2000000006ACAGUGCCUGCACAGGGUGCUCAGGGCUGGGCAUUACCUGCUGCAAUGACAACAUCUAGCUGGAAGGCAGAGCGCUGAUGG2000000006ACCGUCACUACGUCCCAGUCCAGCGCUGGGCCAUUGUCACCCUAGGGCUGUCUAAGUUGGCAGUGAUGUCUGCCUCUAAUGAGAGGCCAUUGAGAAGG2000000006ACAUUUCCUUGGAGCUGCUCGAGG2000000006ACUCGGCUGUGACAGUCGCUGAAGAUGUAUGCCCGGGGGCGGCAUAUCUUGCAGAUGGCCAGGCCUGUGAGGCUGGCACCACUGCCAAGCUCUAAGACAGACCUGGCGAGAGGAAAGGGG2000000006ACCGUGUCUGCGACUGCACCAGGGUAAGCCCGCCUCGGUGCCCUGCCCUGCGCCCCAAGGUCACCUGUGAGUGAAGGCUGCCGGGUUCUCGAUGGCCCAUUCUGCAAUGUAGAGGGCGGCAUCCCAUGUGACCAGACCCGUGGUGCUGUGGGAGAUGAUGGCCAUGCUUUCGGAGAGUGUGACCGAGCCUCCCGAGGGCUGCACCAAGAGAGGGCGAGAGAGUCAGUCCAGCAAUCAGAAGGCAAGUGGCUUAGAAGACAAAUAGCCAUCCACCACAUGGCCAAAUAAACCAUGACAGG2000000006ACCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 544 675 746 934 1015 1113 1137 1257 1556
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 8:8236726:- 8:8236595:- 8:8236524:- 8:8236336:- 8:8236255:- 8:8236157:- 8:8236133:- 8:8236013:- 8:8235714:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
5FhTyQVy2tKW
6AyXsheySjfx
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
5FhTyQVy2tKW
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
Ap2q43bQLNek
gZuvgwMuBfgh
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn