General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000259526
Gene ID:	ENSG00000136999
Gene Name:	CCN3
Sequence (UNICHARACTER ENCODING)	AAGCACCGGACCAGGGGGAAGGCGAGCAGUGCCAAUCUACAGCGAAGAAAGUCUCGUUUGGUAAAAGCGAGAGGGGAAAGCCUGAGCAUGCAGAGUGUGCAGAGCACGAGCUUUUGUCUCCGAAAGCAGUGCCUUUGCCUGACCUUCCUGCUUCUCCAUCUCCUGGGACAGGUCGCUGCGACUCAGCGCUGCCCUCCCCAGUGCCCGGGCCGGUGCCCUGCGACGCCGCCGACCUGCGCCCCCGGGGUGCGCGCGGUGCUGGACGGCUGCUCAUGCUGUCUGGUGUGUGCCCGCCAGCGUGGCGAGAGCUGCUCAGAUCUGGAGCCAUGCGACGAGAGCAGUGGCCUCUACUGUGAUCGCAGCGCGGACCCCAGCAACCAGACUGGCAUCUGCACGGCGGUAGAGGGAGAUAACUGUGUGUUCGAUGGGGUCAUCUACCGCAGUGGAGAGAAAUUUCAGCCAAGCUGCAAAUUCCAGUGCACCUGCAGAGAUGGGCAGAUUGGCUGUGUGCCCCGCUGUCAGCUGGAUGUGCUACUGCCUGAGCCUAACUGCCCAGCUCCAAGAAAAGUUGAGGUGCCUGGAGAGUGCUGUGAAAAGUGGAUCUGUGGCCCAGAUGAGGAGGAUUCACUGGGAGGCCUUACCCUUGCAGCUUACAGGCCAGAAGCCACCCUAGGAGUAGAAGUCUCUGACUCAAGUGUCAACUGCAUUGAЖCAGACCACAGAGUGGACAGCAUGCUCCAAGAGCUGUGGUAUGGGGUUCUCCACCCGGGUCACCAAUAGGAACCGUCAAUGUGAGAUGCUGAAACAGACUCGGCUCUGCAUGGUGCGGCCCUGUGAACAAGAGCCAGAGCAGCCAACAGAUAAGAAAGGAAAAAAGUGUCUCCGCACCAAGAAGUCACUCAAAGCCAPCCACCUGCAGUUCAAGAACUGCACCAGCCUGCACACCUACAAGCCCAGGUUCUGUGGGGUCUGCAGUGAUGGCCGCUGCUGCACUCCCCACAAUACCAAAACCAUCCAGGCAGAGUUUCAGUGCUCCCCAGGGCAAAUAGUCAAGAAGCCAGUGAUGGUCAUUGGGЖCCUGCACCUGUCACACCAACUGUCCUAAGAЖCAAUGAGGCCUUCCPCCAGGAGCUGGAGCUGAAGACUACCAGAGGGAAAAUGUAACCUGUCACUCAAGAAGCACACCUACAGAGCACCUGUAGCUGCUGCGCCACCCACCAUCAAAGGAAUAUAAGAAAAGUAAUGAAGAAUCACGAUUUCAPCCUUGAAUCCUAUGUAUUUUCCUAAUGUGAUCAUAUGAGGЖCCUPUAUAUCUGUCUUUUAUUUAACAAAAAAUGUAAUUAACUGUAAACUUGGAAUCAAGGUAAGCUCAGGAUAUGGCUUAGGAAUGACUUACUUUCCUGUGGUUUUAUUACAAAUGCAAAUUUCUAUAAAUUUAAGAAAACAAGUAUAUAAUUUACUUUGUAGACUGUUUCACAUUGCACUCAUCAUAUUUUGUUGUGCACUAGUGCAAUUCCAAGAAAAUAUCACUGUAAUGAGUCAGUGAAGUCUAGAAUCAUACUUAACAUUUCAUUGUACAAGUAUUACAACCAUAUAUUGAGGUUCAUUGGGAAGAUUCUCUAUUGGCUCCCUUUUUGGGUAAACCAGCUCUGAACUUCCAAGCUCCAAAUCCAAGGAAACAUGCAGCUCUUCAACAUGACAPCCAGAGAUGACUAUUACUUUUCUGUUUAGUUUUACACUAGGAAACGUGUUGUAUCUACAGUAAUGAAAUGUUUACUAAGUGGACUGGUGUCAUAAACUUUCUCCAUUUAAGACACAUUGACUCCUUUCCAAUAGAAAGAAACUAAЖCAGAAAACUCCCAAUACAAAGAUGACUGGUCCCUCAUAGCCCUCAGACAUUUAUAUAUUGGAAGCUGCUGAGGCCCCCAAGUUUUUUAAUUAAGCAGAAЖCAGCAUAUUAGCAGGGAUUCUCUCAUCUAACUGAUGAGUAAACUGAGGCCCAAAGCACUUGCUUACAPCCUCUGAUAGCUGUUUCAAAUGUGCAUUUUGUGGAAUUUUGAGAAAAAUAGAGCAAAAUCAACAUGACUGGUGGUGAGAGACCACACAUUUUAUGAGAGUUUGGAAUUAUUGUAGACAUGCCCAAAACUUAUCCUUGGGCCAUAAUUAUGAAAACUCAUGAUCAAGAUAUAUGUGUAUACAUACAUGUAUCUGGUUUGUCAGGCUACAAGGUAGGCUGCAAAAUUAAAUCUAGACAUUCUUUUAAUGCCACCACACGUGUUCCGCUUCUCUCUUUUAAAGUAUUUAUAAAAAUAUAAAUUGUACAUUUUGUAAAAUAUUAUGUUUGAUUUCUCUACUUGUCAUAUCACUAAAUAAACACGAUUUUAUUGCUGCGUGACUCUGUAUUACUUUGGUGCAUAAAAGUUGAACAUUGUUGUUUACUGAAAAUAAAAUUAAAAUUUAUGAAUUAAA
Sequence (SHORT NAMES ENCODING)	AAGCACCGGACCAGGGGGAAGGCGAGCAGUGCCAAUCUACAGCGAAGAAAGUCUCGUUUGGUAAAAGCGAGAGGGGAAAGCCUGAGCAUGCAGAGUGUGCAGAGCACGAGCUUUUGUCUCCGAAAGCAGUGCCUUUGCCUGACCUUCCUGCUUCUCCAUCUCCUGGGACAGGUCGCUGCGACUCAGCGCUGCCCUCCCCAGUGCCCGGGCCGGUGCCCUGCGACGCCGCCGACCUGCGCCCCCGGGGUGCGCGCGGUGCUGGACGGCUGCUCAUGCUGUCUGGUGUGUGCCCGCCAGCGUGGCGAGAGCUGCUCAGAUCUGGAGCCAUGCGACGAGAGCAGUGGCCUCUACUGUGAUCGCAGCGCGGACCCCAGCAACCAGACUGGCAUCUGCACGGCGGUAGAGGGAGAUAACUGUGUGUUCGAUGGGGUCAUCUACCGCAGUGGAGAGAAAUUUCAGCCAAGCUGCAAAUUCCAGUGCACCUGCAGAGAUGGGCAGAUUGGCUGUGUGCCCCGCUGUCAGCUGGAUGUGCUACUGCCUGAGCCUAACUGCCCAGCUCCAAGAAAAGUUGAGGUGCCUGGAGAGUGCUGUGAAAAGUGGAUCUGUGGCCCAGAUGAGGAGGAUUCACUGGGAGGCCUUACCCUUGCAGCUUACAGGCCAGAAGCCACCCUAGGAGUAGAAGUCUCUGACUCAAGUGUCAACUGCAUUGAm6ACAGACCACAGAGUGGACAGCAUGCUCCAAGAGCUGUGGUAUGGGGUUCUCCACCCGGGUCACCAAUAGGAACCGUCAAUGUGAGAUGCUGAAACAGACUCGGCUCUGCAUGGUGCGGCCCUGUGAACAAGAGCCAGAGCAGCCAACAGAUAAGAAAGGAAAAAAGUGUCUCCGCACCAAGAAGUCACUCAAAGCCAYCCACCUGCAGUUCAAGAACUGCACCAGCCUGCACACCUACAAGCCCAGGUUCUGUGGGGUCUGCAGUGAUGGCCGCUGCUGCACUCCCCACAAUACCAAAACCAUCCAGGCAGAGUUUCAGUGCUCCCCAGGGCAAAUAGUCAAGAAGCCAGUGAUGGUCAUUGGGm6ACCUGCACCUGUCACACCAACUGUCCUAAGAm6ACAAUGAGGCCUUCCYCCAGGAGCUGGAGCUGAAGACUACCAGAGGGAAAAUGUAACCUGUCACUCAAGAAGCACACCUACAGAGCACCUGUAGCUGCUGCGCCACCCACCAUCAAAGGAAUAUAAGAAAAGUAAUGAAGAAUCACGAUUUCAYCCUUGAAUCCUAUGUAUUUUCCUAAUGUGAUCAUAUGAGGm6ACCUYUAUAUCUGUCUUUUAUUUAACAAAAAAUGUAAUUAACUGUAAACUUGGAAUCAAGGUAAGCUCAGGAUAUGGCUUAGGAAUGACUUACUUUCCUGUGGUUUUAUUACAAAUGCAAAUUUCUAUAAAUUUAAGAAAACAAGUAUAUAAUUUACUUUGUAGACUGUUUCACAUUGCACUCAUCAUAUUUUGUUGUGCACUAGUGCAAUUCCAAGAAAAUAUCACUGUAAUGAGUCAGUGAAGUCUAGAAUCAUACUUAACAUUUCAUUGUACAAGUAUUACAACCAUAUAUUGAGGUUCAUUGGGAAGAUUCUCUAUUGGCUCCCUUUUUGGGUAAACCAGCUCUGAACUUCCAAGCUCCAAAUCCAAGGAAACAUGCAGCUCUUCAACAUGACAYCCAGAGAUGACUAUUACUUUUCUGUUUAGUUUUACACUAGGAAACGUGUUGUAUCUACAGUAAUGAAAUGUUUACUAAGUGGACUGGUGUCAUAAACUUUCUCCAUUUAAGACACAUUGACUCCUUUCCAAUAGAAAGAAACUAAm6ACAGAAAACUCCCAAUACAAAGAUGACUGGUCCCUCAUAGCCCUCAGACAUUUAUAUAUUGGAAGCUGCUGAGGCCCCCAAGUUUUUUAAUUAAGCAGAAm6ACAGCAUAUUAGCAGGGAUUCUCUCAUCUAACUGAUGAGUAAACUGAGGCCCAAAGCACUUGCUUACAYCCUCUGAUAGCUGUUUCAAAUGUGCAUUUUGUGGAAUUUUGAGAAAAAUAGAGCAAAAUCAACAUGACUGGUGGUGAGAGACCACACAUUUUAUGAGAGUUUGGAAUUAUUGUAGACAUGCCCAAAACUUAUCCUUGGGCCAUAAUUAUGAAAACUCAUGAUCAAGAUAUAUGUGUAUACAUACAUGUAUCUGGUUUGUCAGGCUACAAGGUAGGCUGCAAAAUUAAAUCUAGACAUUCUUUUAAUGCCACCACACGUGUUCCGCUUCUCUCUUUUAAAGUAUUUAUAAAAAUAUAAAUUGUACAUUUUGUAAAAUAUUAUGUUUGAUUUCUCUACUUGUCAUAUCACUAAAUAAACACGAUUUUAUUGCUGCGUGACUCUGUAUUACUUUGGUGCAUAAAAGUUGAACAUUGUUGUUUACUGAAAAUAAAAUUAAAAUUUAUGAAUUAAA
Sequence (MODOMICS CODE ENCODING)	AAGCACCGGACCAGGGGGAAGGCGAGCAGUGCCAAUCUACAGCGAAGAAAGUCUCGUUUGGUAAAAGCGAGAGGGGAAAGCCUGAGCAUGCAGAGUGUGCAGAGCACGAGCUUUUGUCUCCGAAAGCAGUGCCUUUGCCUGACCUUCCUGCUUCUCCAUCUCCUGGGACAGGUCGCUGCGACUCAGCGCUGCCCUCCCCAGUGCCCGGGCCGGUGCCCUGCGACGCCGCCGACCUGCGCCCCCGGGGUGCGCGCGGUGCUGGACGGCUGCUCAUGCUGUCUGGUGUGUGCCCGCCAGCGUGGCGAGAGCUGCUCAGAUCUGGAGCCAUGCGACGAGAGCAGUGGCCUCUACUGUGAUCGCAGCGCGGACCCCAGCAACCAGACUGGCAUCUGCACGGCGGUAGAGGGAGAUAACUGUGUGUUCGAUGGGGUCAUCUACCGCAGUGGAGAGAAAUUUCAGCCAAGCUGCAAAUUCCAGUGCACCUGCAGAGAUGGGCAGAUUGGCUGUGUGCCCCGCUGUCAGCUGGAUGUGCUACUGCCUGAGCCUAACUGCCCAGCUCCAAGAAAAGUUGAGGUGCCUGGAGAGUGCUGUGAAAAGUGGAUCUGUGGCCCAGAUGAGGAGGAUUCACUGGGAGGCCUUACCCUUGCAGCUUACAGGCCAGAAGCCACCCUAGGAGUAGAAGUCUCUGACUCAAGUGUCAACUGCAUUGA2000000006ACAGACCACAGAGUGGACAGCAUGCUCCAAGAGCUGUGGUAUGGGGUUCUCCACCCGGGUCACCAAUAGGAACCGUCAAUGUGAGAUGCUGAAACAGACUCGGCUCUGCAUGGUGCGGCCCUGUGAACAAGAGCCAGAGCAGCCAACAGAUAAGAAAGGAAAAAAGUGUCUCCGCACCAAGAAGUCACUCAAAGCCA2000000009UCCACCUGCAGUUCAAGAACUGCACCAGCCUGCACACCUACAAGCCCAGGUUCUGUGGGGUCUGCAGUGAUGGCCGCUGCUGCACUCCCCACAAUACCAAAACCAUCCAGGCAGAGUUUCAGUGCUCCCCAGGGCAAAUAGUCAAGAAGCCAGUGAUGGUCAUUGGG2000000006ACCUGCACCUGUCACACCAACUGUCCUAAGA2000000006ACAAUGAGGCCUUCC2000000009UCCAGGAGCUGGAGCUGAAGACUACCAGAGGGAAAAUGUAACCUGUCACUCAAGAAGCACACCUACAGAGCACCUGUAGCUGCUGCGCCACCCACCAUCAAAGGAAUAUAAGAAAAGUAAUGAAGAAUCACGAUUUCA2000000009UCCUUGAAUCCUAUGUAUUUUCCUAAUGUGAUCAUAUGAGG2000000006ACCU2000000009UUAUAUCUGUCUUUUAUUUAACAAAAAAUGUAAUUAACUGUAAACUUGGAAUCAAGGUAAGCUCAGGAUAUGGCUUAGGAAUGACUUACUUUCCUGUGGUUUUAUUACAAAUGCAAAUUUCUAUAAAUUUAAGAAAACAAGUAUAUAAUUUACUUUGUAGACUGUUUCACAUUGCACUCAUCAUAUUUUGUUGUGCACUAGUGCAAUUCCAAGAAAAUAUCACUGUAAUGAGUCAGUGAAGUCUAGAAUCAUACUUAACAUUUCAUUGUACAAGUAUUACAACCAUAUAUUGAGGUUCAUUGGGAAGAUUCUCUAUUGGCUCCCUUUUUGGGUAAACCAGCUCUGAACUUCCAAGCUCCAAAUCCAAGGAAACAUGCAGCUCUUCAACAUGACA2000000009UCCAGAGAUGACUAUUACUUUUCUGUUUAGUUUUACACUAGGAAACGUGUUGUAUCUACAGUAAUGAAAUGUUUACUAAGUGGACUGGUGUCAUAAACUUUCUCCAUUUAAGACACAUUGACUCCUUUCCAAUAGAAAGAAACUAA2000000006ACAGAAAACUCCCAAUACAAAGAUGACUGGUCCCUCAUAGCCCUCAGACAUUUAUAUAUUGGAAGCUGCUGAGGCCCCCAAGUUUUUUAAUUAAGCAGAA2000000006ACAGCAUAUUAGCAGGGAUUCUCUCAUCUAACUGAUGAGUAAACUGAGGCCCAAAGCACUUGCUUACA2000000009UCCUCUGAUAGCUGUUUCAAAUGUGCAUUUUGUGGAAUUUUGAGAAAAAUAGAGCAAAAUCAACAUGACUGGUGGUGAGAGACCACACAUUUUAUGAGAGUUUGGAAUUAUUGUAGACAUGCCCAAAACUUAUCCUUGGGCCAUAAUUAUGAAAACUCAUGAUCAAGAUAUAUGUGUAUACAUACAUGUAUCUGGUUUGUCAGGCUACAAGGUAGGCUGCAAAAUUAAAUCUAGACAUUCUUUUAAUGCCACCACACGUGUUCCGCUUCUCUCUUUUAAAGUAUUUAUAAAAAUAUAAAUUGUACAUUUUGUAAAAUAUUAUGUUUGAUUUCUCUACUUGUCAUAUCACUAAAUAAACACGAUUUUAUUGCUGCGUGACUCUGUAUUACUUUGGUGCAUAAAAGUUGAACAUUGUUGUUUACUGAAAAUAAAAUUAAAAUUUAUGAAUUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	711	908	1075	1106	1121	1259	1300	1304	1698	1844	1944	2012
Modification Positions	m6A	Y	m6A	m6A	Y	Y	m6A	Y	Y	m6A	m6A	Y
Genomic Coordinates	8:119419192:+	8:119422879:+	8:119423046:+	8:119423077:+	8:119423092:+	8:119423230:+	8:119423271:+	8:119423275:+	8:119423669:+	8:119423815:+	8:119423915:+	8:119423983:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac