Modomics - A Database of RNA Modifications

General Data

RNA Type snRNA
SOTerm SO:0000396
Original Source None
Sequence (UNICHARACTER ENCODING) §CUUCGGGGACAUCCGAUAAAAPUGGAACGACACЖGAGʍAGAUUʍGCAUGGCCBCUGCGBAʍGGAUGACAC#CACAAAUC#AGAAAPGGUCCAAAUUUU
Sequence (SHORT NAMES ENCODING) mpppNCUUCGGGGACAUCCGAUAAAApYUGGAACGACACpm6AGAGpAmAGAUUpAmGCAUGGCCpCmCUGCGpCmApAmGGAUGACACpGmCACAAAUCpGmAGAAApYGGUCCAAAUUUU
Sequence (MODOMICS CODE ENCODING) 2000001553NCUUCGGGGACAUCCGAUAAAA2000009551UUGGAACGACAC2000006551AGAG2000090551AAGAUU2000090551AGCAUGGCC2000090551CCUGCG2000090551CA2000090551AGGAUGACAC2000090551GCACAAAUC2000090551GAGAAA2000009551UGGUCCAAAUUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment None 28 None 41 None 45 None 51 None 60 None 66 None 68 None 78 None 86 None 92 None
Position in the sequence 0 22 22 34 34 38 38 44 44 53 53 59 59 61 61 71 71 80 80 86 86
Modification positions mpppN pY pY pm6A pm6A pAm pAm pAm pAm pCm pCm pCm pCm pAm pAm pGm pGm pGm pGm pY pY
Level of Experimental Evidence 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Level of Experimental Reliability 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS