Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000517654
Gene ID: ENSG00000153310
Gene Name: CYRIB
Sequence (UNICHARACTER ENCODING) AAACGGCGGCGGCGGCGGCACCGGAGGCUCCGAGGCUCCUGCGCUCCCGCGCCGCGCUCCCCUCGCCCGCCCGGGCCGCCAGGAGAAGAAЖCUGAGGCCUGGAAUUUGAUUAЖCUCAUUCAAGGUUACCCAGUUGAUAGAAGGACAAGGACAGAAUCACCAGCACUGGCUGAAGGUACCUUAЖCAUGGGGAAUCUUCUUAAAGUUUUGACAUGCACAGACCUUGAGCAGGGGCCAAAUUUUUUCCUUGAUUUUGAAAAUGCCCAGCCUACAGAGUCUGAGAAGGAAAUUUAUAAUCAGGUGAAUGUAGUAUUAAAAGAUGCAGAAGGCAUCUUGGAGGACUUGCAGUCAUACAGAGGAGCUGGCCACGAAAUACGAGAGGCAAUCCAGCAPCCAGCAGAUGAGAAGUUGCAAGAGAAGGCAUGGGGUGCAGUUGUUCCACUAGUAGGCAAAUUAAAGAAAUUUUACGAAUUUUCUCAGAGGUUAGAAGCAGCAUUAAGAGGUCUUCUGGGAGCCUUAЖCAAGUACCCCAUAUUCUCCCACCCAGCAUCUAGAGCGAGAGCAGGCUCUUGCUAAACAGUUUGCAGAAAUUCUUCAUUUCACACUCCGGUUUGAUGAACUCAAGAUGACAAAUCCUGCCAUACAGAAUGAUUUCAGCUAUUAUAGAAGAACAUUGAGUCGUAUGAGGAUUAACAAUGUACCGGCAGAAGGAGAAAAUGAAGUAAAUAAUGAAUUGGCAAAUCGAAUGUCUUUGUUUUAUGCUGAGGCAACUCCAAUGCUGAAAACCUUGAGUGAUGCCACAACAAAAUUUGUAUCAGAGAAUAAAAAUUUACCAAUAGAAAAUACCACAGAUUGUUUAAGCACAAUGGCUAGUGUAUGCAGAGUCAUGCUGGAAACACCGGAAUACAGAAGCAGAUUUACЖAAUGAAGAGЖCAGUGUCAUUCUGCUUGAGGGUAAUGGUGGGUGUCAUAAUACUCUAUGACCACGUACAPCCAGUGGGAGCAUUUGCUAAAACUUCCAAAAUUGAUAUGAAAGGUUGUAUCAAAGUUCUUAAGGACCAACCPCCUAAUAGUGUGGAAGGUCUUCUAAAUGCUCUCAGGUACACAACAAAACAUUUGAAUGAUGAGACUACCPCCAAGCAAAUUAAAUCCAUGCUGCAAUAACAAUUCUGGAAUAAGCACCUGCUGUAGЖCAGAAGACAGUAUUCUGCAAUGACUGAGAAUGCAGUUUUUUAGUGAUUGCAAUUACUAUCUCAUUUAUUCUUGCUUUUAUUUCUUUCCUCUGUUCCUCUUCCCUCUUUUUUAAUCAUGUUCUUAAGACUUCUUUUCUGUGCCAAAAUCAGUAAAGUUACЖCUCUGAAGGGAUAUCAPCCUUUCAAACGGGCCAUCUAAGGCAGCUAAUUAUGCAUUGCAUUGGGGUCUCUACUGAGAAAAAUUCUGUGACUUGAACUAAAUAUUUUUAAAUGUGGAUUUUUUUUGAAACUAAUAUUUAAUAUUGCUUCUCCUGCAUGGCAAAACUGCCUAUUCUGCUAUUUAAAAACCCUCAAUGACUPUAUUUUCUACUGCCGCCUUUUUCAUGUGCAACCAAAAUGAAAAUGUUUAAAUUAACUGUGUUGUACAAAUGGUACCCAACACAAACUUUUUUUAAAUUAGUAAUACUUUUGUUUAAAGUUUUAAGUUUGCAUUUUGACUUUUUUUGUAAGGAUGUAUGUUGUGUGUUUAACCUPUAUUAACUAACGUUAAAAGCUGUGAUGUGUGCGUAGAAUAUUACGUAUGCAUGUUCAUGUCUAAAGAAUGGCUGUUGAUGAUAAAAUAAAAAUCAGC
Sequence (SHORT NAMES ENCODING) AAACGGCGGCGGCGGCGGCACCGGAGGCUCCGAGGCUCCUGCGCUCCCGCGCCGCGCUCCCCUCGCCCGCCCGGGCCGCCAGGAGAAGAAm6ACUGAGGCCUGGAAUUUGAUUAm6ACUCAUUCAAGGUUACCCAGUUGAUAGAAGGACAAGGACAGAAUCACCAGCACUGGCUGAAGGUACCUUAm6ACAUGGGGAAUCUUCUUAAAGUUUUGACAUGCACAGACCUUGAGCAGGGGCCAAAUUUUUUCCUUGAUUUUGAAAAUGCCCAGCCUACAGAGUCUGAGAAGGAAAUUUAUAAUCAGGUGAAUGUAGUAUUAAAAGAUGCAGAAGGCAUCUUGGAGGACUUGCAGUCAUACAGAGGAGCUGGCCACGAAAUACGAGAGGCAAUCCAGCAYCCAGCAGAUGAGAAGUUGCAAGAGAAGGCAUGGGGUGCAGUUGUUCCACUAGUAGGCAAAUUAAAGAAAUUUUACGAAUUUUCUCAGAGGUUAGAAGCAGCAUUAAGAGGUCUUCUGGGAGCCUUAm6ACAAGUACCCCAUAUUCUCCCACCCAGCAUCUAGAGCGAGAGCAGGCUCUUGCUAAACAGUUUGCAGAAAUUCUUCAUUUCACACUCCGGUUUGAUGAACUCAAGAUGACAAAUCCUGCCAUACAGAAUGAUUUCAGCUAUUAUAGAAGAACAUUGAGUCGUAUGAGGAUUAACAAUGUACCGGCAGAAGGAGAAAAUGAAGUAAAUAAUGAAUUGGCAAAUCGAAUGUCUUUGUUUUAUGCUGAGGCAACUCCAAUGCUGAAAACCUUGAGUGAUGCCACAACAAAAUUUGUAUCAGAGAAUAAAAAUUUACCAAUAGAAAAUACCACAGAUUGUUUAAGCACAAUGGCUAGUGUAUGCAGAGUCAUGCUGGAAACACCGGAAUACAGAAGCAGAUUUACm6AAAUGAAGAGm6ACAGUGUCAUUCUGCUUGAGGGUAAUGGUGGGUGUCAUAAUACUCUAUGACCACGUACAYCCAGUGGGAGCAUUUGCUAAAACUUCCAAAAUUGAUAUGAAAGGUUGUAUCAAAGUUCUUAAGGACCAACCYCCUAAUAGUGUGGAAGGUCUUCUAAAUGCUCUCAGGUACACAACAAAACAUUUGAAUGAUGAGACUACCYCCAAGCAAAUUAAAUCCAUGCUGCAAUAACAAUUCUGGAAUAAGCACCUGCUGUAGm6ACAGAAGACAGUAUUCUGCAAUGACUGAGAAUGCAGUUUUUUAGUGAUUGCAAUUACUAUCUCAUUUAUUCUUGCUUUUAUUUCUUUCCUCUGUUCCUCUUCCCUCUUUUUUAAUCAUGUUCUUAAGACUUCUUUUCUGUGCCAAAAUCAGUAAAGUUACm6ACUCUGAAGGGAUAUCAYCCUUUCAAACGGGCCAUCUAAGGCAGCUAAUUAUGCAUUGCAUUGGGGUCUCUACUGAGAAAAAUUCUGUGACUUGAACUAAAUAUUUUUAAAUGUGGAUUUUUUUUGAAACUAAUAUUUAAUAUUGCUUCUCCUGCAUGGCAAAACUGCCUAUUCUGCUAUUUAAAAACCCUCAAUGACUYUAUUUUCUACUGCCGCCUUUUUCAUGUGCAACCAAAAUGAAAAUGUUUAAAUUAACUGUGUUGUACAAAUGGUACCCAACACAAACUUUUUUUAAAUUAGUAAUACUUUUGUUUAAAGUUUUAAGUUUGCAUUUUGACUUUUUUUGUAAGGAUGUAUGUUGUGUGUUUAACCUYUAUUAACUAACGUUAAAAGCUGUGAUGUGUGCGUAGAAUAUUACGUAUGCAUGUUCAUGUCUAAAGAAUGGCUGUUGAUGAUAAAAUAAAAAUCAGC
Sequence (MODOMICS CODE ENCODING) AAACGGCGGCGGCGGCGGCACCGGAGGCUCCGAGGCUCCUGCGCUCCCGCGCCGCGCUCCCCUCGCCCGCCCGGGCCGCCAGGAGAAGAA2000000006ACUGAGGCCUGGAAUUUGAUUA2000000006ACUCAUUCAAGGUUACCCAGUUGAUAGAAGGACAAGGACAGAAUCACCAGCACUGGCUGAAGGUACCUUA2000000006ACAUGGGGAAUCUUCUUAAAGUUUUGACAUGCACAGACCUUGAGCAGGGGCCAAAUUUUUUCCUUGAUUUUGAAAAUGCCCAGCCUACAGAGUCUGAGAAGGAAAUUUAUAAUCAGGUGAAUGUAGUAUUAAAAGAUGCAGAAGGCAUCUUGGAGGACUUGCAGUCAUACAGAGGAGCUGGCCACGAAAUACGAGAGGCAAUCCAGCA2000000009UCCAGCAGAUGAGAAGUUGCAAGAGAAGGCAUGGGGUGCAGUUGUUCCACUAGUAGGCAAAUUAAAGAAAUUUUACGAAUUUUCUCAGAGGUUAGAAGCAGCAUUAAGAGGUCUUCUGGGAGCCUUA2000000006ACAAGUACCCCAUAUUCUCCCACCCAGCAUCUAGAGCGAGAGCAGGCUCUUGCUAAACAGUUUGCAGAAAUUCUUCAUUUCACACUCCGGUUUGAUGAACUCAAGAUGACAAAUCCUGCCAUACAGAAUGAUUUCAGCUAUUAUAGAAGAACAUUGAGUCGUAUGAGGAUUAACAAUGUACCGGCAGAAGGAGAAAAUGAAGUAAAUAAUGAAUUGGCAAAUCGAAUGUCUUUGUUUUAUGCUGAGGCAACUCCAAUGCUGAAAACCUUGAGUGAUGCCACAACAAAAUUUGUAUCAGAGAAUAAAAAUUUACCAAUAGAAAAUACCACAGAUUGUUUAAGCACAAUGGCUAGUGUAUGCAGAGUCAUGCUGGAAACACCGGAAUACAGAAGCAGAUUUAC2000000006AAAUGAAGAG2000000006ACAGUGUCAUUCUGCUUGAGGGUAAUGGUGGGUGUCAUAAUACUCUAUGACCACGUACA2000000009UCCAGUGGGAGCAUUUGCUAAAACUUCCAAAAUUGAUAUGAAAGGUUGUAUCAAAGUUCUUAAGGACCAACC2000000009UCCUAAUAGUGUGGAAGGUCUUCUAAAUGCUCUCAGGUACACAACAAAACAUUUGAAUGAUGAGACUACC2000000009UCCAAGCAAAUUAAAUCCAUGCUGCAAUAACAAUUCUGGAAUAAGCACCUGCUGUAG2000000006ACAGAAGACAGUAUUCUGCAAUGACUGAGAAUGCAGUUUUUUAGUGAUUGCAAUUACUAUCUCAUUUAUUCUUGCUUUUAUUUCUUUCCUCUGUUCCUCUUCCCUCUUUUUUAAUCAUGUUCUUAAGACUUCUUUUCUGUGCCAAAAUCAGUAAAGUUAC2000000006ACUCUGAAGGGAUAUCA2000000009UCCUUUCAAACGGGCCAUCUAAGGCAGCUAAUUAUGCAUUGCAUUGGGGUCUCUACUGAGAAAAAUUCUGUGACUUGAACUAAAUAUUUUUAAAUGUGGAUUUUUUUUGAAACUAAUAUUUAAUAUUGCUUCUCCUGCAUGGCAAAACUGCCUAUUCUGCUAUUUAAAAACCCUCAAUGACU2000000009UUAUUUUCUACUGCCGCCUUUUUCAUGUGCAACCAAAAUGAAAAUGUUUAAAUUAACUGUGUUGUACAAAUGGUACCCAACACAAACUUUUUUUAAAUUAGUAAUACUUUUGUUUAAAGUUUUAAGUUUGCAUUUUGACUUUUUUUGUAAGGAUGUAUGUUGUGUGUUUAACCU2000000009UUAUUAACUAACGUUAAAAGCUGUGAUGUGUGCGUAGAAUAUUACGUAUGCAUGUUCAUGUCUAAAGAAUGGCUGUUGAUGAUAAAAUAAAAAUCAGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 91 113 183 391 518 919 929 988 1060 1130 1187 1347 1364 1546 1720
Modification Positions m6A m6A m6A Y m6A m6A m6A Y Y Y m6A m6A Y Y Y
Genomic Coordinates 8:129970987:- 8:129970965:- 8:129879463:- 8:129862323:- 8:129855715:- 8:129849348:- 8:129849338:- 8:129849279:- 8:129846839:- 8:129842171:- 8:129842114:- 8:129841954:- 8:129841937:- 8:129841755:- 8:129841581:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
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BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
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Mk6ShCGm6RBJ
S9vNeQQYrhac
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bXBqJigD9oV3
dknfVe6BK8aP
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S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
ArijeGVTwYBw
KTLz8piFYdwC
BtsJQJ3DteUq
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Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
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8cMbzB4aD5Se
WiQcrNTGZHPT
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XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
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kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8