Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000497143
Gene ID: ENSG00000172766
Gene Name: NAA16
Sequence (UNICHARACTER ENCODING) UUUGAUAUUCAUCACCACCCUAAGAGGACACACAGCUGAUGGCAACCUCUUUCCCCUUUAAAACAUCAGGAUCUGGUCCGCAGUCAGCCUCUCUCCAGUUUGUCUUCCCAGGAUAUUUGCUCUCACAUUCAGUAUUCUGUAUAACAAUCUAUGGCCAGUUUGCAGGCUUAUUUUAUUGCUUGCUUUUAGGAUUAUUUGUGUGAUGUGCCUUAGUGAGGGGACUUUUCUUUUCCUUUGUGUGAAUUUUUGUUUUCCUGUUCUUUGUCAUCUCUGAAGCACUCUCCUUCCACAUGGACCACAGGAGGAAAAGAGCCGCAAAUGCACCCCUGAGGCAGUCCUCAGCAGCCCUCAGUUGUGGGGGCAAUCGGCACCACUGUUCCCAUCCUGACGCAGUAUAGAACCACAGGCAUCGUAGUCAGCAUUUUUUUGAGAUAACUGAUGACCAAUUCGACUUCCAUACAUACUGCAUGAGAAAGAUGACCCUUCGUGCCUAUGUUGACCUUUUGAGAUUAGAAGAUAUACUCAGAAGACAUGCCUUUUAUUUCAAGGCUGCUAGAUCAGCGAUUGAAAUAUACUUGAAAUUGUAUGAUAAUCCCUUAACCAAUGAAAGCAAACAACAAGAAAUAAACUCAGAAAACUUGUCAGCCAAAGAAUUGAAGAAAAUGCUUAGCAAGCAGAGAAGAGCUCAGAAAAAGGCUAAACUAGAAGAAGAAAGAAAGCAUGCAGAAAGAGAACGUCAACAGAAAAAUCAAAAGAAAAAAAGAGAUGAAGAAGAAGAAGAAGCCAGUGGCCUUAAGGAAGAACUUAUACCUGAAAAAUUAGAAAGGGUAGAAAAUCCAUUAGAGGAAGCCGUUAAGUUCCUUAUACCUCUUAAGAACCUUGUUGCUGAUAACAUUGACACUCAUCUGUUAGCAUUUGAAAUAUAUUUUAGAAAAGGAAAGUUUCUGUUAAUGCUGCAGUCUGUCAAACGAGCUUUUGCCAUUAACAGUAAUAACCCAUGGUUACAUGAAUGUUUAAUUAGAUUUUCUAAAUCUGUGUCUAAUCAUAGUAAUCUUCCAGACAUUGUGAGCAAAGUUCUAUCUCAAGAAAUGCAGAAAAUAUUUGUCAAAAAGGAUUUGGAAAGUUUUAAUGAGGAUUUUCUGAAACGUAACGCUACCUCUCUUCAGCAUCUACUUUCAGGUGCUAAAAUGAUGUAUUUUCUGGACAAGUCAAGGCAGGAGAAAGCAAUUGCUAUAGCCACUAGACUAGAUGAAACUAUAAAAGAUAAAGAUGUAAAGACAUUAAUAAAGGUUUCUGAAGCACUGCUUGAUGGCAGCUUUGGGAACUGUAGUUCCCAAUAUGAAGAAUAUAGGAUGGCCUGUCAUAACCUGCUUCCUUUUACAUCUGCCUUCUUGCCUGCUGUGAAUGAAGUCGACAAUCCUAAUGUGGCACUGAACCAUACAGCUAAUUAUGAUGUCUUGGCAAAUGAAAUUUGAAAUCUUCUAGAAAGUAGACUCCUAUAGЖCUCAAAGCUGAAUUGAGAUCAGGGUUUCUUUUCCAGGGUGCAUUUUAAUAUACGUAUGAAAUGAAAUAUUUGGUUAGGAUUUUUAAAUGGCAUAUUCUGUAAGCUUAUUUUGUUCUUUACCCGACCUGCCAAUUUACAUAACCAUCUGUUAAAAUUACCUGUUUAUUCUUACACAGUUUUGUGGUAGCUCCGAUCGCUUCUGUAUAAUUAUAAUUUCUUACUAAGCUAAGUUGUAUACAACCCCACUGUAUUAUUUUCUUUAGAUUCUGAUUUCAGGAUCUGUGCUUUGAUUCCUUGUCUGUUUUAUCGUAUAUUUGCUUGCUUUUUAAUUAAAGCACAUCAGUUUUAAAGUGUUAACUAUAUGUUAACAAUAUGGAGGCUGGGCGUGGUGGCUCACACCUGUAAUCCCAGCACUUUGGGAGGCCCAGACUGGCGGAUCACCUGAGGUCAGGAGAUCGAGAUCAGCCUGGCCAACAUGGUGAAACCCCUUCUCUACUGAAAAUACAAAAAUUAGCCAGACGUGAUGGCACAUACCUGUAAUCCAAGCUGCCCAGGAGCUGAGGCCGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGAGCCGAGAUCAUGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCGAAAAAAAGGAAUUCCUCUUGGCAGAUAUUGAAGUUUAUUUGAAAAUUUAAUUCGUCCUUUUUUCAUUGUAAUAUUUCAUGGUUUACUAUUUCCUUUUAGUAUUCAUGAAAAUGGUAUUUUCUGGUUGAAUAAGGGUACUCUAGUUUUAUGUAGAUGAUUUCAGAAUGUGAAGGCUGGUUUGCCUGUCAGUCAUGGAAAUUCACUGGUAAAAUUGUUGAAUAUUUCUCUCUCCCAGUCUUAAAAGCCCACAGGCAAGAAUUAAUGCUUUCUUAACUAAGUUACUUUGAGUAUUAACAAGUAGCUUAUACUGAGGUGUGCUUCAAGGGAGCAUUAUAGGGCAGAAAACAAAUUAAAAUGAAAUGUUGUUGUUAUAGCCAUGCAUUGACCAUUAAAUGCAUUUUAAUAUCUCGGCAAAAUGAGAUUUGAAACUCAUUAGUUUAACUCUUAAAACAUAGUGUUGUUAAACAGUAUUUUUUGGGGGCGGGUGGAUAGCUUUUUGUUCUAUCUUGUACAGAAAACAGUAAUGGAAUCACUCAUGUUCAGAACCUUGUAAAUAUGUCUGUAAUAUUAAUGCUUCCCUPUAUUAAGACAAAUAUACAUUCAAAAAGGGAGAUUUUAUUUAGACACACAUUUUCUUUUCACCCUAAUCUAUUUAGAUUCAUACUUAUUGAGACGGGAAAAACUCGCUGUAAAAUAAUGCCAACCUAGAUAAUGCUAUAAUAAAUUAUUUUGUACACAGUU
Sequence (SHORT NAMES ENCODING) UUUGAUAUUCAUCACCACCCUAAGAGGACACACAGCUGAUGGCAACCUCUUUCCCCUUUAAAACAUCAGGAUCUGGUCCGCAGUCAGCCUCUCUCCAGUUUGUCUUCCCAGGAUAUUUGCUCUCACAUUCAGUAUUCUGUAUAACAAUCUAUGGCCAGUUUGCAGGCUUAUUUUAUUGCUUGCUUUUAGGAUUAUUUGUGUGAUGUGCCUUAGUGAGGGGACUUUUCUUUUCCUUUGUGUGAAUUUUUGUUUUCCUGUUCUUUGUCAUCUCUGAAGCACUCUCCUUCCACAUGGACCACAGGAGGAAAAGAGCCGCAAAUGCACCCCUGAGGCAGUCCUCAGCAGCCCUCAGUUGUGGGGGCAAUCGGCACCACUGUUCCCAUCCUGACGCAGUAUAGAACCACAGGCAUCGUAGUCAGCAUUUUUUUGAGAUAACUGAUGACCAAUUCGACUUCCAUACAUACUGCAUGAGAAAGAUGACCCUUCGUGCCUAUGUUGACCUUUUGAGAUUAGAAGAUAUACUCAGAAGACAUGCCUUUUAUUUCAAGGCUGCUAGAUCAGCGAUUGAAAUAUACUUGAAAUUGUAUGAUAAUCCCUUAACCAAUGAAAGCAAACAACAAGAAAUAAACUCAGAAAACUUGUCAGCCAAAGAAUUGAAGAAAAUGCUUAGCAAGCAGAGAAGAGCUCAGAAAAAGGCUAAACUAGAAGAAGAAAGAAAGCAUGCAGAAAGAGAACGUCAACAGAAAAAUCAAAAGAAAAAAAGAGAUGAAGAAGAAGAAGAAGCCAGUGGCCUUAAGGAAGAACUUAUACCUGAAAAAUUAGAAAGGGUAGAAAAUCCAUUAGAGGAAGCCGUUAAGUUCCUUAUACCUCUUAAGAACCUUGUUGCUGAUAACAUUGACACUCAUCUGUUAGCAUUUGAAAUAUAUUUUAGAAAAGGAAAGUUUCUGUUAAUGCUGCAGUCUGUCAAACGAGCUUUUGCCAUUAACAGUAAUAACCCAUGGUUACAUGAAUGUUUAAUUAGAUUUUCUAAAUCUGUGUCUAAUCAUAGUAAUCUUCCAGACAUUGUGAGCAAAGUUCUAUCUCAAGAAAUGCAGAAAAUAUUUGUCAAAAAGGAUUUGGAAAGUUUUAAUGAGGAUUUUCUGAAACGUAACGCUACCUCUCUUCAGCAUCUACUUUCAGGUGCUAAAAUGAUGUAUUUUCUGGACAAGUCAAGGCAGGAGAAAGCAAUUGCUAUAGCCACUAGACUAGAUGAAACUAUAAAAGAUAAAGAUGUAAAGACAUUAAUAAAGGUUUCUGAAGCACUGCUUGAUGGCAGCUUUGGGAACUGUAGUUCCCAAUAUGAAGAAUAUAGGAUGGCCUGUCAUAACCUGCUUCCUUUUACAUCUGCCUUCUUGCCUGCUGUGAAUGAAGUCGACAAUCCUAAUGUGGCACUGAACCAUACAGCUAAUUAUGAUGUCUUGGCAAAUGAAAUUUGAAAUCUUCUAGAAAGUAGACUCCUAUAGm6ACUCAAAGCUGAAUUGAGAUCAGGGUUUCUUUUCCAGGGUGCAUUUUAAUAUACGUAUGAAAUGAAAUAUUUGGUUAGGAUUUUUAAAUGGCAUAUUCUGUAAGCUUAUUUUGUUCUUUACCCGACCUGCCAAUUUACAUAACCAUCUGUUAAAAUUACCUGUUUAUUCUUACACAGUUUUGUGGUAGCUCCGAUCGCUUCUGUAUAAUUAUAAUUUCUUACUAAGCUAAGUUGUAUACAACCCCACUGUAUUAUUUUCUUUAGAUUCUGAUUUCAGGAUCUGUGCUUUGAUUCCUUGUCUGUUUUAUCGUAUAUUUGCUUGCUUUUUAAUUAAAGCACAUCAGUUUUAAAGUGUUAACUAUAUGUUAACAAUAUGGAGGCUGGGCGUGGUGGCUCACACCUGUAAUCCCAGCACUUUGGGAGGCCCAGACUGGCGGAUCACCUGAGGUCAGGAGAUCGAGAUCAGCCUGGCCAACAUGGUGAAACCCCUUCUCUACUGAAAAUACAAAAAUUAGCCAGACGUGAUGGCACAUACCUGUAAUCCAAGCUGCCCAGGAGCUGAGGCCGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGAGCCGAGAUCAUGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCGAAAAAAAGGAAUUCCUCUUGGCAGAUAUUGAAGUUUAUUUGAAAAUUUAAUUCGUCCUUUUUUCAUUGUAAUAUUUCAUGGUUUACUAUUUCCUUUUAGUAUUCAUGAAAAUGGUAUUUUCUGGUUGAAUAAGGGUACUCUAGUUUUAUGUAGAUGAUUUCAGAAUGUGAAGGCUGGUUUGCCUGUCAGUCAUGGAAAUUCACUGGUAAAAUUGUUGAAUAUUUCUCUCUCCCAGUCUUAAAAGCCCACAGGCAAGAAUUAAUGCUUUCUUAACUAAGUUACUUUGAGUAUUAACAAGUAGCUUAUACUGAGGUGUGCUUCAAGGGAGCAUUAUAGGGCAGAAAACAAAUUAAAAUGAAAUGUUGUUGUUAUAGCCAUGCAUUGACCAUUAAAUGCAUUUUAAUAUCUCGGCAAAAUGAGAUUUGAAACUCAUUAGUUUAACUCUUAAAACAUAGUGUUGUUAAACAGUAUUUUUUGGGGGCGGGUGGAUAGCUUUUUGUUCUAUCUUGUACAGAAAACAGUAAUGGAAUCACUCAUGUUCAGAACCUUGUAAAUAUGUCUGUAAUAUUAAUGCUUCCCUYUAUUAAGACAAAUAUACAUUCAAAAAGGGAGAUUUUAUUUAGACACACAUUUUCUUUUCACCCUAAUCUAUUUAGAUUCAUACUUAUUGAGACGGGAAAAACUCGCUGUAAAAUAAUGCCAACCUAGAUAAUGCUAUAAUAAAUUAUUUUGUACACAGUU
Sequence (MODOMICS CODE ENCODING) UUUGAUAUUCAUCACCACCCUAAGAGGACACACAGCUGAUGGCAACCUCUUUCCCCUUUAAAACAUCAGGAUCUGGUCCGCAGUCAGCCUCUCUCCAGUUUGUCUUCCCAGGAUAUUUGCUCUCACAUUCAGUAUUCUGUAUAACAAUCUAUGGCCAGUUUGCAGGCUUAUUUUAUUGCUUGCUUUUAGGAUUAUUUGUGUGAUGUGCCUUAGUGAGGGGACUUUUCUUUUCCUUUGUGUGAAUUUUUGUUUUCCUGUUCUUUGUCAUCUCUGAAGCACUCUCCUUCCACAUGGACCACAGGAGGAAAAGAGCCGCAAAUGCACCCCUGAGGCAGUCCUCAGCAGCCCUCAGUUGUGGGGGCAAUCGGCACCACUGUUCCCAUCCUGACGCAGUAUAGAACCACAGGCAUCGUAGUCAGCAUUUUUUUGAGAUAACUGAUGACCAAUUCGACUUCCAUACAUACUGCAUGAGAAAGAUGACCCUUCGUGCCUAUGUUGACCUUUUGAGAUUAGAAGAUAUACUCAGAAGACAUGCCUUUUAUUUCAAGGCUGCUAGAUCAGCGAUUGAAAUAUACUUGAAAUUGUAUGAUAAUCCCUUAACCAAUGAAAGCAAACAACAAGAAAUAAACUCAGAAAACUUGUCAGCCAAAGAAUUGAAGAAAAUGCUUAGCAAGCAGAGAAGAGCUCAGAAAAAGGCUAAACUAGAAGAAGAAAGAAAGCAUGCAGAAAGAGAACGUCAACAGAAAAAUCAAAAGAAAAAAAGAGAUGAAGAAGAAGAAGAAGCCAGUGGCCUUAAGGAAGAACUUAUACCUGAAAAAUUAGAAAGGGUAGAAAAUCCAUUAGAGGAAGCCGUUAAGUUCCUUAUACCUCUUAAGAACCUUGUUGCUGAUAACAUUGACACUCAUCUGUUAGCAUUUGAAAUAUAUUUUAGAAAAGGAAAGUUUCUGUUAAUGCUGCAGUCUGUCAAACGAGCUUUUGCCAUUAACAGUAAUAACCCAUGGUUACAUGAAUGUUUAAUUAGAUUUUCUAAAUCUGUGUCUAAUCAUAGUAAUCUUCCAGACAUUGUGAGCAAAGUUCUAUCUCAAGAAAUGCAGAAAAUAUUUGUCAAAAAGGAUUUGGAAAGUUUUAAUGAGGAUUUUCUGAAACGUAACGCUACCUCUCUUCAGCAUCUACUUUCAGGUGCUAAAAUGAUGUAUUUUCUGGACAAGUCAAGGCAGGAGAAAGCAAUUGCUAUAGCCACUAGACUAGAUGAAACUAUAAAAGAUAAAGAUGUAAAGACAUUAAUAAAGGUUUCUGAAGCACUGCUUGAUGGCAGCUUUGGGAACUGUAGUUCCCAAUAUGAAGAAUAUAGGAUGGCCUGUCAUAACCUGCUUCCUUUUACAUCUGCCUUCUUGCCUGCUGUGAAUGAAGUCGACAAUCCUAAUGUGGCACUGAACCAUACAGCUAAUUAUGAUGUCUUGGCAAAUGAAAUUUGAAAUCUUCUAGAAAGUAGACUCCUAUAG2000000006ACUCAAAGCUGAAUUGAGAUCAGGGUUUCUUUUCCAGGGUGCAUUUUAAUAUACGUAUGAAAUGAAAUAUUUGGUUAGGAUUUUUAAAUGGCAUAUUCUGUAAGCUUAUUUUGUUCUUUACCCGACCUGCCAAUUUACAUAACCAUCUGUUAAAAUUACCUGUUUAUUCUUACACAGUUUUGUGGUAGCUCCGAUCGCUUCUGUAUAAUUAUAAUUUCUUACUAAGCUAAGUUGUAUACAACCCCACUGUAUUAUUUUCUUUAGAUUCUGAUUUCAGGAUCUGUGCUUUGAUUCCUUGUCUGUUUUAUCGUAUAUUUGCUUGCUUUUUAAUUAAAGCACAUCAGUUUUAAAGUGUUAACUAUAUGUUAACAAUAUGGAGGCUGGGCGUGGUGGCUCACACCUGUAAUCCCAGCACUUUGGGAGGCCCAGACUGGCGGAUCACCUGAGGUCAGGAGAUCGAGAUCAGCCUGGCCAACAUGGUGAAACCCCUUCUCUACUGAAAAUACAAAAAUUAGCCAGACGUGAUGGCACAUACCUGUAAUCCAAGCUGCCCAGGAGCUGAGGCCGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGAGCCGAGAUCAUGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCGAAAAAAAGGAAUUCCUCUUGGCAGAUAUUGAAGUUUAUUUGAAAAUUUAAUUCGUCCUUUUUUCAUUGUAAUAUUUCAUGGUUUACUAUUUCCUUUUAGUAUUCAUGAAAAUGGUAUUUUCUGGUUGAAUAAGGGUACUCUAGUUUUAUGUAGAUGAUUUCAGAAUGUGAAGGCUGGUUUGCCUGUCAGUCAUGGAAAUUCACUGGUAAAAUUGUUGAAUAUUUCUCUCUCCCAGUCUUAAAAGCCCACAGGCAAGAAUUAAUGCUUUCUUAACUAAGUUACUUUGAGUAUUAACAAGUAGCUUAUACUGAGGUGUGCUUCAAGGGAGCAUUAUAGGGCAGAAAACAAAUUAAAAUGAAAUGUUGUUGUUAUAGCCAUGCAUUGACCAUUAAAUGCAUUUUAAUAUCUCGGCAAAAUGAGAUUUGAAACUCAUUAGUUUAACUCUUAAAACAUAGUGUUGUUAAACAGUAUUUUUUGGGGGCGGGUGGAUAGCUUUUUGUUCUAUCUUGUACAGAAAACAGUAAUGGAAUCACUCAUGUUCAGAACCUUGUAAAUAUGUCUGUAAUAUUAAUGCUUCCCU2000000009UUAUUAAGACAAAUAUACAUUCAAAAAGGGAGAUUUUAUUUAGACACACAUUUUCUUUUCACCCUAAUCUAUUUAGAUUCAUACUUAUUGAGACGGGAAAAACUCGCUGUAAAAUAAUGCCAACCUAGAUAAUGCUAUAAUAAAUUAUUUUGUACACAGUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1503 2743
Modification Positions m6A Y
Genomic Coordinates 13:41375630:+ 13:41376870:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
iezFbUdmY3A6