Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000649952
Gene ID: ENSG00000139734
Gene Name: DIAPH3
Sequence (UNICHARACTER ENCODING) UGCUCUGCUUAAAAAAUCAUUUGAGCAGCCGACAGUGCUGACAGUGCCACUAUGUGGGCAGAAGCACAGCUUGACUCAGACCCUGACAACUGUUGAUCUGGGAGAGGGAAAGAGAAGACUGUUUAAAACCUGUUGAGAAGGUACUGAUGACAUGGAGAUUAAUUUGACACCAGUCCCUCAGAGAAAAUCAGAAAGUGCAGUUGACAGAAGGGUCACGUUCACACUACAAUAUCAAUUGCAACUCAACAAGGACUCCAGUCGCCAAGGAGCUUAAUUAUAAUCUAGACACUCAUACGUCUACUGGGAGGAUCAAGGCAGCUGAGAAGAAGGAAGCGUGUAAUGUAGAAAGCAACAGAAAAAAGGAAACGGAЖCUUCUUGGCUCUUUUUCUAAAAAUGAAUCAGUUCCCGAAGUUGAAGCCCUGCUGGCAAGAUUACGAGCUPUAUAAGUUAAACUGGUUUUUAAAAAAAAUGAUUAAGCCAAAUAUAAAGCCAUGCUCUAAACUAUAЖCACUUGAAAAAAUUGCUUUUAUGUAAGUGACUPUAUAUAGUUUUAAAUUAUGAUAUAUAUUAGAAAAAUAAAGCUAAAUAUAUGAUUGCAAUGCUUUUUCUAUGUACUGGAGGUUUUGGUUUAUUCAAGAUUGUACCGGGCUPUAAUCCUUUUUUUUUUUUUUUUGUCUCCUGGUAUUCCUCAGUUCUPUAUUUGGUGGUUAAAUUAUACAUAUUGCUPUAGAGAGCAGGUAGGUGGCCAUGUGUUCAGCAGUGUGUCCUUAAGAAAAUACCAUCUUUCUAAGCCACUGGAAUUUUUACUPUACUAUUUUUAACAUUAAUGGAUGUCAGGUCAUCAACCUCAAGUCUUUACAUAUCCAUGUAUAUUCCAUAUAUAUUGUUUAUAUAGGCCCAAGUUUCUCCUUAAUUGGGAUCUAUAUACUACCAGCACAACAUCAAAAACAUGUAAUUGAAUACAUCAGAGCUAUAUAUGUAAGGAAAUGACUGGUGACCCCAUUAUCAUCAUUGUUGAAUUCAUGUUAAGUAGACCCUCUAGGGGACCAPAAGGCAAUUGAGCACAUAACGAAAAAUGAUGCAAUAAGAAUGUAUGCACUCUCUUUGCCAAAUGCAUGUGCUUUUGUGUAACGUGGAUGUAAЖCAGAAUUGCAGUGCUGCCGAAAUUCUUGAUCUUGGCUAAGAGAGUAUUUUUCCCCUUGUAAUUAUGACUCUGAGAUAAAAUUGCCAUUUUGAAAUUUCCAAAGUAACAACUUUUUUUAUUUUAUGAAUAAACUUGGGAUUGCAAUUUCUCUGAUCUGACAAUCAAUAACUPUAACAAAGAUCUAAAUAAGUGUUUC
Sequence (SHORT NAMES ENCODING) UGCUCUGCUUAAAAAAUCAUUUGAGCAGCCGACAGUGCUGACAGUGCCACUAUGUGGGCAGAAGCACAGCUUGACUCAGACCCUGACAACUGUUGAUCUGGGAGAGGGAAAGAGAAGACUGUUUAAAACCUGUUGAGAAGGUACUGAUGACAUGGAGAUUAAUUUGACACCAGUCCCUCAGAGAAAAUCAGAAAGUGCAGUUGACAGAAGGGUCACGUUCACACUACAAUAUCAAUUGCAACUCAACAAGGACUCCAGUCGCCAAGGAGCUUAAUUAUAAUCUAGACACUCAUACGUCUACUGGGAGGAUCAAGGCAGCUGAGAAGAAGGAAGCGUGUAAUGUAGAAAGCAACAGAAAAAAGGAAACGGAm6ACUUCUUGGCUCUUUUUCUAAAAAUGAAUCAGUUCCCGAAGUUGAAGCCCUGCUGGCAAGAUUACGAGCUYUAUAAGUUAAACUGGUUUUUAAAAAAAAUGAUUAAGCCAAAUAUAAAGCCAUGCUCUAAACUAUAm6ACACUUGAAAAAAUUGCUUUUAUGUAAGUGACUYUAUAUAGUUUUAAAUUAUGAUAUAUAUUAGAAAAAUAAAGCUAAAUAUAUGAUUGCAAUGCUUUUUCUAUGUACUGGAGGUUUUGGUUUAUUCAAGAUUGUACCGGGCUYUAAUCCUUUUUUUUUUUUUUUUGUCUCCUGGUAUUCCUCAGUUCUYUAUUUGGUGGUUAAAUUAUACAUAUUGCUYUAGAGAGCAGGUAGGUGGCCAUGUGUUCAGCAGUGUGUCCUUAAGAAAAUACCAUCUUUCUAAGCCACUGGAAUUUUUACUYUACUAUUUUUAACAUUAAUGGAUGUCAGGUCAUCAACCUCAAGUCUUUACAUAUCCAUGUAUAUUCCAUAUAUAUUGUUUAUAUAGGCCCAAGUUUCUCCUUAAUUGGGAUCUAUAUACUACCAGCACAACAUCAAAAACAUGUAAUUGAAUACAUCAGAGCUAUAUAUGUAAGGAAAUGACUGGUGACCCCAUUAUCAUCAUUGUUGAAUUCAUGUUAAGUAGACCCUCUAGGGGACCAYAAGGCAAUUGAGCACAUAACGAAAAAUGAUGCAAUAAGAAUGUAUGCACUCUCUUUGCCAAAUGCAUGUGCUUUUGUGUAACGUGGAUGUAAm6ACAGAAUUGCAGUGCUGCCGAAAUUCUUGAUCUUGGCUAAGAGAGUAUUUUUCCCCUUGUAAUUAUGACUCUGAGAUAAAAUUGCCAUUUUGAAAUUUCCAAAGUAACAACUUUUUUUAUUUUAUGAAUAAACUUGGGAUUGCAAUUUCUCUGAUCUGACAAUCAAUAACUYUAACAAAGAUCUAAAUAAGUGUUUC
Sequence (MODOMICS CODE ENCODING) UGCUCUGCUUAAAAAAUCAUUUGAGCAGCCGACAGUGCUGACAGUGCCACUAUGUGGGCAGAAGCACAGCUUGACUCAGACCCUGACAACUGUUGAUCUGGGAGAGGGAAAGAGAAGACUGUUUAAAACCUGUUGAGAAGGUACUGAUGACAUGGAGAUUAAUUUGACACCAGUCCCUCAGAGAAAAUCAGAAAGUGCAGUUGACAGAAGGGUCACGUUCACACUACAAUAUCAAUUGCAACUCAACAAGGACUCCAGUCGCCAAGGAGCUUAAUUAUAAUCUAGACACUCAUACGUCUACUGGGAGGAUCAAGGCAGCUGAGAAGAAGGAAGCGUGUAAUGUAGAAAGCAACAGAAAAAAGGAAACGGA2000000006ACUUCUUGGCUCUUUUUCUAAAAAUGAAUCAGUUCCCGAAGUUGAAGCCCUGCUGGCAAGAUUACGAGCU2000000009UUAUAAGUUAAACUGGUUUUUAAAAAAAAUGAUUAAGCCAAAUAUAAAGCCAUGCUCUAAACUAUA2000000006ACACUUGAAAAAAUUGCUUUUAUGUAAGUGACU2000000009UUAUAUAGUUUUAAAUUAUGAUAUAUAUUAGAAAAAUAAAGCUAAAUAUAUGAUUGCAAUGCUUUUUCUAUGUACUGGAGGUUUUGGUUUAUUCAAGAUUGUACCGGGCU2000000009UUAAUCCUUUUUUUUUUUUUUUUGUCUCCUGGUAUUCCUCAGUUCU2000000009UUAUUUGGUGGUUAAAUUAUACAUAUUGCU2000000009UUAGAGAGCAGGUAGGUGGCCAUGUGUUCAGCAGUGUGUCCUUAAGAAAAUACCAUCUUUCUAAGCCACUGGAAUUUUUACU2000000009UUACUAUUUUUAACAUUAAUGGAUGUCAGGUCAUCAACCUCAAGUCUUUACAUAUCCAUGUAUAUUCCAUAUAUAUUGUUUAUAUAGGCCCAAGUUUCUCCUUAAUUGGGAUCUAUAUACUACCAGCACAACAUCAAAAACAUGUAAUUGAAUACAUCAGAGCUAUAUAUGUAAGGAAAUGACUGGUGACCCCAUUAUCAUCAUUGUUGAAUUCAUGUUAAGUAGACCCUCUAGGGGACCA2000000009UAAGGCAAUUGAGCACAUAACGAAAAAUGAUGCAAUAAGAAUGUAUGCACUCUCUUUGCCAAAUGCAUGUGCUUUUGUGUAACGUGGAUGUAA2000000006ACAGAAUUGCAGUGCUGCCGAAAUUCUUGAUCUUGGCUAAGAGAGUAUUUUUCCCCUUGUAAUUAUGACUCUGAGAUAAAAUUGCCAUUUUGAAAUUUCCAAAGUAACAACUUUUUUUAUUUUAUGAAUAAACUUGGGAUUGCAAUUUCUCUGAUCUGACAAUCAAUAACU2000000009UUAACAAAGAUCUAAAUAAGUGUUUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 371 441 507 540 650 696 726 808 1049 1142 1313
Modification Positions m6A Y m6A Y Y Y Y Y Y m6A Y
Genomic Coordinates 13:59666659:- 13:59666589:- 13:59666523:- 13:59666490:- 13:59666380:- 13:59666334:- 13:59666304:- 13:59666222:- 13:59665981:- 13:59665888:- 13:59665717:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VL7zkHvkfkoB
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8